Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2738

Experiment: MoLS4 with L-Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2737 and DVU2738 are separated by 237 nucleotidesDVU2738 and DVU2739 are separated by 658 nucleotides DVU2737: DVU2737 - RNA methyltransferase, TrmH family (TIGR), at 2,838,542 to 2,839,306 DVU2737 DVU2738: DVU2738 - methyl-accepting chemotaxis protein (TIGR), at 2,839,544 to 2,841,949 DVU2738 DVU2739: DVU2739 - pyruvate phosphate dikinase, PEP/pyruvate binding domain protein (TIGR), at 2,842,608 to 2,845,445 DVU2739 Position (kb) 2839 2840 2841 2842Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2838.560 kb on - strandat 2838.605 kb on + strandat 2838.636 kb on + strand, within DVU2737at 2838.651 kb on + strand, within DVU2737at 2838.720 kb on + strand, within DVU2737at 2838.720 kb on + strand, within DVU2737at 2838.720 kb on + strand, within DVU2737at 2838.729 kb on - strand, within DVU2737at 2838.775 kb on + strand, within DVU2737at 2838.910 kb on - strand, within DVU2737at 2838.978 kb on + strand, within DVU2737at 2838.981 kb on - strand, within DVU2737at 2839.124 kb on - strand, within DVU2737at 2839.239 kb on + strandat 2839.279 kb on + strandat 2839.308 kb on - strandat 2839.412 kb on - strandat 2839.459 kb on + strandat 2839.459 kb on + strandat 2839.459 kb on + strandat 2839.467 kb on - strandat 2839.505 kb on + strandat 2839.513 kb on - strandat 2839.514 kb on - strandat 2839.601 kb on - strandat 2839.626 kb on - strandat 2839.640 kb on + strandat 2839.648 kb on - strandat 2839.702 kb on + strandat 2839.702 kb on + strandat 2839.715 kb on + strandat 2839.777 kb on - strandat 2839.813 kb on + strand, within DVU2738at 2839.821 kb on - strand, within DVU2738at 2839.873 kb on + strand, within DVU2738at 2839.873 kb on + strand, within DVU2738at 2839.995 kb on - strand, within DVU2738at 2840.109 kb on - strand, within DVU2738at 2840.116 kb on + strand, within DVU2738at 2840.124 kb on - strand, within DVU2738at 2840.289 kb on + strand, within DVU2738at 2840.367 kb on + strand, within DVU2738at 2840.367 kb on - strand, within DVU2738at 2840.375 kb on - strand, within DVU2738at 2840.394 kb on - strand, within DVU2738at 2840.407 kb on - strand, within DVU2738at 2840.423 kb on + strand, within DVU2738at 2840.430 kb on + strand, within DVU2738at 2840.599 kb on - strand, within DVU2738at 2840.609 kb on + strand, within DVU2738at 2840.609 kb on + strand, within DVU2738at 2840.624 kb on + strand, within DVU2738at 2840.726 kb on - strand, within DVU2738at 2840.777 kb on + strand, within DVU2738at 2840.838 kb on + strand, within DVU2738at 2840.859 kb on + strand, within DVU2738at 2840.865 kb on - strand, within DVU2738at 2840.888 kb on - strand, within DVU2738at 2840.948 kb on + strand, within DVU2738at 2840.949 kb on - strand, within DVU2738at 2841.157 kb on - strand, within DVU2738at 2841.343 kb on - strand, within DVU2738at 2841.445 kb on - strand, within DVU2738at 2841.465 kb on - strand, within DVU2738at 2841.640 kb on + strand, within DVU2738at 2841.854 kb on - strandat 2842.045 kb on + strandat 2842.055 kb on + strandat 2842.058 kb on - strandat 2842.063 kb on - strandat 2842.064 kb on - strandat 2842.069 kb on - strandat 2842.070 kb on + strandat 2842.070 kb on + strandat 2842.080 kb on + strandat 2842.080 kb on + strandat 2842.088 kb on - strandat 2842.113 kb on - strandat 2842.354 kb on - strandat 2842.430 kb on - strandat 2842.532 kb on + strandat 2842.536 kb on + strandat 2842.593 kb on - strandat 2842.593 kb on - strandat 2842.593 kb on - strandat 2842.595 kb on - strandat 2842.610 kb on + strandat 2842.610 kb on - strandat 2842.641 kb on + strandat 2842.662 kb on - strandat 2842.728 kb on + strandat 2842.743 kb on - strandat 2842.764 kb on - strandat 2842.774 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
remove
2,838,560 - +0.9
2,838,605 + -1.4
2,838,636 + DVU2737 0.12 -0.3
2,838,651 + DVU2737 0.14 +0.3
2,838,720 + DVU2737 0.23 -0.4
2,838,720 + DVU2737 0.23 -0.6
2,838,720 + DVU2737 0.23 +0.3
2,838,729 - DVU2737 0.24 -0.3
2,838,775 + DVU2737 0.30 -0.3
2,838,910 - DVU2737 0.48 -0.2
2,838,978 + DVU2737 0.57 -0.2
2,838,981 - DVU2737 0.57 +0.1
2,839,124 - DVU2737 0.76 +0.3
2,839,239 + +1.1
2,839,279 + +2.4
2,839,308 - -0.4
2,839,412 - -0.4
2,839,459 + -0.4
2,839,459 + -0.4
2,839,459 + -2.6
2,839,467 - -0.2
2,839,505 + -0.3
2,839,513 - -0.0
2,839,514 - -1.0
2,839,601 - -0.8
2,839,626 - +0.3
2,839,640 + -0.2
2,839,648 - -0.3
2,839,702 + -0.2
2,839,702 + -1.0
2,839,715 + -0.5
2,839,777 - -1.0
2,839,813 + DVU2738 0.11 -0.1
2,839,821 - DVU2738 0.12 +0.8
2,839,873 + DVU2738 0.14 -0.7
2,839,873 + DVU2738 0.14 -1.2
2,839,995 - DVU2738 0.19 -0.1
2,840,109 - DVU2738 0.23 -0.4
2,840,116 + DVU2738 0.24 -3.0
2,840,124 - DVU2738 0.24 -0.8
2,840,289 + DVU2738 0.31 -0.2
2,840,367 + DVU2738 0.34 +1.4
2,840,367 - DVU2738 0.34 -0.6
2,840,375 - DVU2738 0.35 +0.1
2,840,394 - DVU2738 0.35 -1.6
2,840,407 - DVU2738 0.36 -1.1
2,840,423 + DVU2738 0.37 -0.4
2,840,430 + DVU2738 0.37 +0.4
2,840,599 - DVU2738 0.44 -0.2
2,840,609 + DVU2738 0.44 -0.6
2,840,609 + DVU2738 0.44 -0.4
2,840,624 + DVU2738 0.45 -0.8
2,840,726 - DVU2738 0.49 -0.3
2,840,777 + DVU2738 0.51 -1.1
2,840,838 + DVU2738 0.54 -0.5
2,840,859 + DVU2738 0.55 +0.0
2,840,865 - DVU2738 0.55 -0.6
2,840,888 - DVU2738 0.56 -0.3
2,840,948 + DVU2738 0.58 -0.7
2,840,949 - DVU2738 0.58 -0.1
2,841,157 - DVU2738 0.67 +0.1
2,841,343 - DVU2738 0.75 +1.8
2,841,445 - DVU2738 0.79 -0.9
2,841,465 - DVU2738 0.80 -0.7
2,841,640 + DVU2738 0.87 -1.3
2,841,854 - -0.2
2,842,045 + -0.6
2,842,055 + +1.8
2,842,058 - -0.3
2,842,063 - +0.0
2,842,064 - -0.3
2,842,069 - +0.2
2,842,070 + +0.1
2,842,070 + +0.2
2,842,080 + -0.9
2,842,080 + -0.9
2,842,088 - -0.1
2,842,113 - -0.6
2,842,354 - +0.9
2,842,430 - +0.2
2,842,532 + -0.2
2,842,536 + -1.0
2,842,593 - +1.2
2,842,593 - -0.2
2,842,593 - -0.3
2,842,595 - +0.0
2,842,610 + +0.2
2,842,610 - -2.2
2,842,641 + +0.1
2,842,662 - -1.1
2,842,728 + -0.3
2,842,743 - -1.2
2,842,764 - -0.0
2,842,774 + +3.4

Or see this region's nucleotide sequence