Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2672

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2671 and DVU2672 are separated by 97 nucleotidesDVU2672 and glpA are separated by 555 nucleotides DVU2671: DVU2671 - HDIG/HD/KH domain protein (TIGR), at 2,781,727 to 2,783,286 DVU2671 DVU2672: DVU2672 - glycine transporter (from data), at 2,783,384 to 2,784,007 DVU2672 DVU2673: glpA - anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation (TIGR), at 2,784,563 to 2,785,732 glpA Position (kb) 2783 2784 2785Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2783.508 kb on - strand, within DVU2672at 2783.598 kb on + strand, within DVU2672at 2783.631 kb on + strand, within DVU2672at 2783.644 kb on + strand, within DVU2672at 2783.652 kb on - strand, within DVU2672at 2783.652 kb on - strand, within DVU2672at 2783.684 kb on - strand, within DVU2672at 2783.684 kb on - strand, within DVU2672at 2783.693 kb on + strand, within DVU2672at 2783.732 kb on - strand, within DVU2672at 2783.766 kb on - strand, within DVU2672at 2783.784 kb on + strand, within DVU2672at 2783.828 kb on + strand, within DVU2672at 2783.887 kb on + strand, within DVU2672at 2783.890 kb on - strand, within DVU2672at 2783.898 kb on + strand, within DVU2672at 2783.960 kb on - strandat 2784.014 kb on - strandat 2784.215 kb on - strandat 2784.224 kb on - strandat 2784.255 kb on - strandat 2784.257 kb on - strandat 2784.395 kb on - strandat 2784.431 kb on - strandat 2784.554 kb on + strandat 2784.649 kb on + strandat 2784.657 kb on - strandat 2784.717 kb on + strand, within glpAat 2784.833 kb on - strand, within glpAat 2784.924 kb on + strand, within glpAat 2784.932 kb on - strand, within glpA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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2,783,508 - DVU2672 0.20 -3.9
2,783,598 + DVU2672 0.34 -3.8
2,783,631 + DVU2672 0.40 -2.7
2,783,644 + DVU2672 0.42 -0.2
2,783,652 - DVU2672 0.43 -4.0
2,783,652 - DVU2672 0.43 -4.6
2,783,684 - DVU2672 0.48 -3.8
2,783,684 - DVU2672 0.48 -4.3
2,783,693 + DVU2672 0.50 -4.3
2,783,732 - DVU2672 0.56 -4.6
2,783,766 - DVU2672 0.61 -2.9
2,783,784 + DVU2672 0.64 -4.4
2,783,828 + DVU2672 0.71 -4.2
2,783,887 + DVU2672 0.81 -3.3
2,783,890 - DVU2672 0.81 -3.8
2,783,898 + DVU2672 0.82 -5.3
2,783,960 - -3.9
2,784,014 - -0.1
2,784,215 - -2.1
2,784,224 - +0.8
2,784,255 - -0.5
2,784,257 - +0.6
2,784,395 - +0.0
2,784,431 - -0.2
2,784,554 + -0.9
2,784,649 + +0.4
2,784,657 - -0.9
2,784,717 + glpA DVU2673 0.13 +0.4
2,784,833 - glpA DVU2673 0.23 -0.0
2,784,924 + glpA DVU2673 0.31 +1.3
2,784,932 - glpA DVU2673 0.32 -0.4

Or see this region's nucleotide sequence