Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2285 and DVU2286 are separated by 542 nucleotides DVU2286 and DVU2287 are separated by 3 nucleotides DVU2287 and DVU2288 are separated by 12 nucleotides
DVU2285: DVU2285 - L-lactate permease family protein (TIGR), at 2,375,226 to 2,376,746
DVU2285
DVU2286: DVU2286 - hydrogenase, CooM subunit, putative (TIGR), at 2,377,289 to 2,381,050
DVU2286
DVU2287: DVU2287 - hydrogenase, CooK subunit, selenocysteine-containing, putative (TIGR), at 2,381,054 to 2,382,019
DVU2287
DVU2288: DVU2288 - hydrogenase, CooL subunit, putative (TIGR), at 2,382,032 to 2,382,466
DVU2288
Position (kb)
2377
2378
2379
2380
2381
2382 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2376.298 kb on + strand, within DVU2285 at 2376.311 kb on - strand, within DVU2285 at 2376.368 kb on - strand, within DVU2285 at 2376.380 kb on + strand, within DVU2285 at 2376.420 kb on + strand, within DVU2285 at 2376.476 kb on + strand, within DVU2285 at 2376.511 kb on - strand, within DVU2285 at 2376.633 kb on - strand at 2376.709 kb on + strand at 2376.717 kb on - strand at 2376.790 kb on - strand at 2376.893 kb on + strand at 2376.962 kb on - strand at 2377.055 kb on - strand at 2377.055 kb on - strand at 2377.240 kb on + strand at 2377.307 kb on + strand at 2377.346 kb on - strand at 2377.643 kb on + strand at 2377.740 kb on - strand, within DVU2286 at 2377.794 kb on + strand, within DVU2286 at 2377.858 kb on - strand, within DVU2286 at 2377.887 kb on + strand, within DVU2286 at 2378.080 kb on - strand, within DVU2286 at 2378.183 kb on - strand, within DVU2286 at 2378.327 kb on - strand, within DVU2286 at 2378.371 kb on - strand, within DVU2286 at 2378.463 kb on + strand, within DVU2286 at 2378.519 kb on + strand, within DVU2286 at 2378.575 kb on + strand, within DVU2286 at 2378.589 kb on - strand, within DVU2286 at 2378.626 kb on + strand, within DVU2286 at 2378.626 kb on + strand, within DVU2286 at 2378.634 kb on - strand, within DVU2286 at 2378.707 kb on - strand, within DVU2286 at 2379.295 kb on - strand, within DVU2286 at 2379.374 kb on + strand, within DVU2286 at 2379.408 kb on + strand, within DVU2286 at 2379.421 kb on - strand, within DVU2286 at 2379.531 kb on - strand, within DVU2286 at 2379.603 kb on - strand, within DVU2286 at 2379.681 kb on - strand, within DVU2286 at 2379.846 kb on + strand, within DVU2286 at 2379.953 kb on + strand, within DVU2286 at 2380.041 kb on - strand, within DVU2286 at 2380.048 kb on - strand, within DVU2286 at 2380.060 kb on + strand, within DVU2286 at 2380.068 kb on - strand, within DVU2286 at 2380.126 kb on - strand, within DVU2286 at 2380.254 kb on - strand, within DVU2286 at 2380.259 kb on - strand, within DVU2286 at 2380.270 kb on + strand, within DVU2286 at 2380.280 kb on + strand, within DVU2286 at 2380.359 kb on - strand, within DVU2286 at 2380.554 kb on + strand, within DVU2286 at 2380.635 kb on + strand, within DVU2286 at 2381.042 kb on - strand at 2381.044 kb on + strand at 2381.131 kb on + strand at 2381.139 kb on - strand at 2381.346 kb on - strand, within DVU2287 at 2381.490 kb on - strand, within DVU2287 at 2381.605 kb on + strand, within DVU2287
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 2,376,298 + DVU2285 0.70 +0.7 2,376,311 - DVU2285 0.71 +0.6 2,376,368 - DVU2285 0.75 +0.7 2,376,380 + DVU2285 0.76 +0.7 2,376,420 + DVU2285 0.79 +0.4 2,376,476 + DVU2285 0.82 +1.2 2,376,511 - DVU2285 0.84 +0.6 2,376,633 - -0.7 2,376,709 + +0.8 2,376,717 - +1.7 2,376,790 - +0.6 2,376,893 + -1.4 2,376,962 - +0.0 2,377,055 - +1.5 2,377,055 - -0.4 2,377,240 + +3.4 2,377,307 + -1.3 2,377,346 - -1.7 2,377,643 + -1.4 2,377,740 - DVU2286 0.12 -0.6 2,377,794 + DVU2286 0.13 -1.4 2,377,858 - DVU2286 0.15 -0.2 2,377,887 + DVU2286 0.16 -2.5 2,378,080 - DVU2286 0.21 -0.6 2,378,183 - DVU2286 0.24 -2.3 2,378,327 - DVU2286 0.28 -1.9 2,378,371 - DVU2286 0.29 -0.2 2,378,463 + DVU2286 0.31 -1.0 2,378,519 + DVU2286 0.33 -2.8 2,378,575 + DVU2286 0.34 -1.8 2,378,589 - DVU2286 0.35 -0.8 2,378,626 + DVU2286 0.36 +0.8 2,378,626 + DVU2286 0.36 +0.8 2,378,634 - DVU2286 0.36 -2.3 2,378,707 - DVU2286 0.38 -0.6 2,379,295 - DVU2286 0.53 -1.6 2,379,374 + DVU2286 0.55 -0.4 2,379,408 + DVU2286 0.56 -3.4 2,379,421 - DVU2286 0.57 -0.8 2,379,531 - DVU2286 0.60 -2.2 2,379,603 - DVU2286 0.62 -3.3 2,379,681 - DVU2286 0.64 -2.3 2,379,846 + DVU2286 0.68 -2.2 2,379,953 + DVU2286 0.71 +0.4 2,380,041 - DVU2286 0.73 -1.2 2,380,048 - DVU2286 0.73 -1.3 2,380,060 + DVU2286 0.74 -0.2 2,380,068 - DVU2286 0.74 -2.3 2,380,126 - DVU2286 0.75 -1.5 2,380,254 - DVU2286 0.79 +0.4 2,380,259 - DVU2286 0.79 +0.4 2,380,270 + DVU2286 0.79 -0.8 2,380,280 + DVU2286 0.80 -1.4 2,380,359 - DVU2286 0.82 -1.0 2,380,554 + DVU2286 0.87 -0.2 2,380,635 + DVU2286 0.89 -1.4 2,381,042 - -3.0 2,381,044 + +2.4 2,381,131 + -1.4 2,381,139 - -0.5 2,381,346 - DVU2287 0.30 -1.0 2,381,490 - DVU2287 0.45 -0.4 2,381,605 + DVU2287 0.57 -2.1
Or see this region's nucleotide sequence