Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2286

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2285 and DVU2286 are separated by 542 nucleotidesDVU2286 and DVU2287 are separated by 3 nucleotidesDVU2287 and DVU2288 are separated by 12 nucleotides DVU2285: DVU2285 - L-lactate permease family protein (TIGR), at 2,375,226 to 2,376,746 DVU2285 DVU2286: DVU2286 - hydrogenase, CooM subunit, putative (TIGR), at 2,377,289 to 2,381,050 DVU2286 DVU2287: DVU2287 - hydrogenase, CooK subunit, selenocysteine-containing, putative (TIGR), at 2,381,054 to 2,382,019 DVU2287 DVU2288: DVU2288 - hydrogenase, CooL subunit, putative (TIGR), at 2,382,032 to 2,382,466 DVU2288 Position (kb) 2377 2378 2379 2380 2381 2382Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2376.298 kb on + strand, within DVU2285at 2376.311 kb on - strand, within DVU2285at 2376.368 kb on - strand, within DVU2285at 2376.380 kb on + strand, within DVU2285at 2376.420 kb on + strand, within DVU2285at 2376.476 kb on + strand, within DVU2285at 2376.511 kb on - strand, within DVU2285at 2376.633 kb on - strandat 2376.709 kb on + strandat 2376.717 kb on - strandat 2376.790 kb on - strandat 2376.893 kb on + strandat 2376.962 kb on - strandat 2377.055 kb on - strandat 2377.055 kb on - strandat 2377.240 kb on + strandat 2377.307 kb on + strandat 2377.346 kb on - strandat 2377.643 kb on + strandat 2377.740 kb on - strand, within DVU2286at 2377.794 kb on + strand, within DVU2286at 2377.858 kb on - strand, within DVU2286at 2377.887 kb on + strand, within DVU2286at 2378.080 kb on - strand, within DVU2286at 2378.183 kb on - strand, within DVU2286at 2378.327 kb on - strand, within DVU2286at 2378.371 kb on - strand, within DVU2286at 2378.463 kb on + strand, within DVU2286at 2378.519 kb on + strand, within DVU2286at 2378.575 kb on + strand, within DVU2286at 2378.589 kb on - strand, within DVU2286at 2378.626 kb on + strand, within DVU2286at 2378.626 kb on + strand, within DVU2286at 2378.634 kb on - strand, within DVU2286at 2378.707 kb on - strand, within DVU2286at 2379.295 kb on - strand, within DVU2286at 2379.374 kb on + strand, within DVU2286at 2379.408 kb on + strand, within DVU2286at 2379.421 kb on - strand, within DVU2286at 2379.531 kb on - strand, within DVU2286at 2379.603 kb on - strand, within DVU2286at 2379.681 kb on - strand, within DVU2286at 2379.846 kb on + strand, within DVU2286at 2379.953 kb on + strand, within DVU2286at 2380.041 kb on - strand, within DVU2286at 2380.048 kb on - strand, within DVU2286at 2380.060 kb on + strand, within DVU2286at 2380.068 kb on - strand, within DVU2286at 2380.126 kb on - strand, within DVU2286at 2380.254 kb on - strand, within DVU2286at 2380.259 kb on - strand, within DVU2286at 2380.270 kb on + strand, within DVU2286at 2380.280 kb on + strand, within DVU2286at 2380.359 kb on - strand, within DVU2286at 2380.554 kb on + strand, within DVU2286at 2380.635 kb on + strand, within DVU2286at 2381.042 kb on - strandat 2381.044 kb on + strandat 2381.131 kb on + strandat 2381.139 kb on - strandat 2381.346 kb on - strand, within DVU2287at 2381.490 kb on - strand, within DVU2287at 2381.605 kb on + strand, within DVU2287

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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2,376,298 + DVU2285 0.70 +0.7
2,376,311 - DVU2285 0.71 +0.6
2,376,368 - DVU2285 0.75 +0.7
2,376,380 + DVU2285 0.76 +0.7
2,376,420 + DVU2285 0.79 +0.4
2,376,476 + DVU2285 0.82 +1.2
2,376,511 - DVU2285 0.84 +0.6
2,376,633 - -0.7
2,376,709 + +0.8
2,376,717 - +1.7
2,376,790 - +0.6
2,376,893 + -1.4
2,376,962 - +0.0
2,377,055 - +1.5
2,377,055 - -0.4
2,377,240 + +3.4
2,377,307 + -1.3
2,377,346 - -1.7
2,377,643 + -1.4
2,377,740 - DVU2286 0.12 -0.6
2,377,794 + DVU2286 0.13 -1.4
2,377,858 - DVU2286 0.15 -0.2
2,377,887 + DVU2286 0.16 -2.5
2,378,080 - DVU2286 0.21 -0.6
2,378,183 - DVU2286 0.24 -2.3
2,378,327 - DVU2286 0.28 -1.9
2,378,371 - DVU2286 0.29 -0.2
2,378,463 + DVU2286 0.31 -1.0
2,378,519 + DVU2286 0.33 -2.8
2,378,575 + DVU2286 0.34 -1.8
2,378,589 - DVU2286 0.35 -0.8
2,378,626 + DVU2286 0.36 +0.8
2,378,626 + DVU2286 0.36 +0.8
2,378,634 - DVU2286 0.36 -2.3
2,378,707 - DVU2286 0.38 -0.6
2,379,295 - DVU2286 0.53 -1.6
2,379,374 + DVU2286 0.55 -0.4
2,379,408 + DVU2286 0.56 -3.4
2,379,421 - DVU2286 0.57 -0.8
2,379,531 - DVU2286 0.60 -2.2
2,379,603 - DVU2286 0.62 -3.3
2,379,681 - DVU2286 0.64 -2.3
2,379,846 + DVU2286 0.68 -2.2
2,379,953 + DVU2286 0.71 +0.4
2,380,041 - DVU2286 0.73 -1.2
2,380,048 - DVU2286 0.73 -1.3
2,380,060 + DVU2286 0.74 -0.2
2,380,068 - DVU2286 0.74 -2.3
2,380,126 - DVU2286 0.75 -1.5
2,380,254 - DVU2286 0.79 +0.4
2,380,259 - DVU2286 0.79 +0.4
2,380,270 + DVU2286 0.79 -0.8
2,380,280 + DVU2286 0.80 -1.4
2,380,359 - DVU2286 0.82 -1.0
2,380,554 + DVU2286 0.87 -0.2
2,380,635 + DVU2286 0.89 -1.4
2,381,042 - -3.0
2,381,044 + +2.4
2,381,131 + -1.4
2,381,139 - -0.5
2,381,346 - DVU2287 0.30 -1.0
2,381,490 - DVU2287 0.45 -0.4
2,381,605 + DVU2287 0.57 -2.1

Or see this region's nucleotide sequence