Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1959

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1958 and DVU1959 are separated by 323 nucleotidesDVU1959 and cheA-2 are separated by 221 nucleotides DVU1958: DVU1958 - sensory box histidine kinase (TIGR), at 2,030,405 to 2,033,002 DVU1958 DVU1959: DVU1959 - EAL domain/GGDEF domain protein (TIGR), at 2,033,326 to 2,035,719 DVU1959 DVU1960: cheA-2 - chemotaxis protein CheA (TIGR), at 2,035,941 to 2,038,034 cheA-2 Position (kb) 2033 2034 2035 2036Strain fitness (log2 ratio) -1 0 1 2 3at 2032.336 kb on + strand, within DVU1958at 2032.397 kb on - strand, within DVU1958at 2032.407 kb on - strand, within DVU1958at 2032.407 kb on - strand, within DVU1958at 2032.407 kb on - strand, within DVU1958at 2032.408 kb on - strand, within DVU1958at 2032.444 kb on - strand, within DVU1958at 2032.467 kb on + strand, within DVU1958at 2032.530 kb on - strand, within DVU1958at 2032.530 kb on - strand, within DVU1958at 2032.588 kb on - strand, within DVU1958at 2032.591 kb on + strand, within DVU1958at 2032.660 kb on + strand, within DVU1958at 2032.913 kb on + strandat 2033.051 kb on - strandat 2033.202 kb on + strandat 2033.212 kb on + strandat 2033.241 kb on + strandat 2033.274 kb on + strandat 2033.303 kb on - strandat 2033.424 kb on - strandat 2033.508 kb on + strandat 2033.556 kb on + strandat 2033.571 kb on + strand, within DVU1959at 2033.586 kb on - strand, within DVU1959at 2033.605 kb on - strand, within DVU1959at 2033.701 kb on - strand, within DVU1959at 2033.743 kb on + strand, within DVU1959at 2033.751 kb on - strand, within DVU1959at 2033.784 kb on + strand, within DVU1959at 2033.917 kb on - strand, within DVU1959at 2033.917 kb on - strand, within DVU1959at 2033.926 kb on - strand, within DVU1959at 2033.986 kb on - strand, within DVU1959at 2034.021 kb on + strand, within DVU1959at 2034.030 kb on - strand, within DVU1959at 2034.038 kb on + strand, within DVU1959at 2034.103 kb on + strand, within DVU1959at 2034.172 kb on + strand, within DVU1959at 2034.210 kb on + strand, within DVU1959at 2034.231 kb on + strand, within DVU1959at 2034.239 kb on - strand, within DVU1959at 2034.239 kb on - strand, within DVU1959at 2034.270 kb on - strand, within DVU1959at 2034.398 kb on + strand, within DVU1959at 2034.467 kb on - strand, within DVU1959at 2034.540 kb on + strand, within DVU1959at 2034.576 kb on - strand, within DVU1959at 2034.744 kb on + strand, within DVU1959at 2034.745 kb on + strand, within DVU1959at 2034.848 kb on - strand, within DVU1959at 2034.905 kb on - strand, within DVU1959at 2034.923 kb on + strand, within DVU1959at 2034.937 kb on + strand, within DVU1959at 2034.944 kb on + strand, within DVU1959at 2034.959 kb on + strand, within DVU1959at 2034.969 kb on + strand, within DVU1959at 2034.977 kb on - strand, within DVU1959at 2035.000 kb on + strand, within DVU1959at 2035.031 kb on - strand, within DVU1959at 2035.052 kb on + strand, within DVU1959at 2035.105 kb on - strand, within DVU1959at 2035.115 kb on - strand, within DVU1959at 2035.218 kb on + strand, within DVU1959at 2035.391 kb on - strand, within DVU1959at 2035.428 kb on - strand, within DVU1959at 2035.473 kb on - strand, within DVU1959at 2035.487 kb on + strandat 2035.650 kb on - strandat 2035.802 kb on - strandat 2035.822 kb on + strandat 2035.846 kb on + strandat 2035.881 kb on - strandat 2035.884 kb on + strandat 2035.892 kb on - strandat 2035.892 kb on - strandat 2035.933 kb on - strandat 2036.073 kb on + strandat 2036.080 kb on + strandat 2036.088 kb on - strandat 2036.304 kb on + strand, within cheA-2at 2036.312 kb on - strand, within cheA-2at 2036.319 kb on + strand, within cheA-2at 2036.451 kb on + strand, within cheA-2at 2036.509 kb on + strand, within cheA-2at 2036.563 kb on + strand, within cheA-2at 2036.581 kb on - strand, within cheA-2at 2036.596 kb on - strand, within cheA-2at 2036.606 kb on - strand, within cheA-2at 2036.606 kb on - strand, within cheA-2at 2036.679 kb on + strand, within cheA-2

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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2,032,336 + DVU1958 0.74 +0.9
2,032,397 - DVU1958 0.77 +0.8
2,032,407 - DVU1958 0.77 +0.4
2,032,407 - DVU1958 0.77 +1.3
2,032,407 - DVU1958 0.77 +0.8
2,032,408 - DVU1958 0.77 +0.3
2,032,444 - DVU1958 0.78 +2.0
2,032,467 + DVU1958 0.79 +0.6
2,032,530 - DVU1958 0.82 +0.8
2,032,530 - DVU1958 0.82 +0.9
2,032,588 - DVU1958 0.84 +0.5
2,032,591 + DVU1958 0.84 +0.4
2,032,660 + DVU1958 0.87 +0.9
2,032,913 + +0.3
2,033,051 - -0.3
2,033,202 + -0.4
2,033,212 + -0.7
2,033,241 + +0.6
2,033,274 + -0.3
2,033,303 - -0.4
2,033,424 - +0.0
2,033,508 + +1.4
2,033,556 + +2.2
2,033,571 + DVU1959 0.10 +0.4
2,033,586 - DVU1959 0.11 -0.7
2,033,605 - DVU1959 0.12 +0.3
2,033,701 - DVU1959 0.16 +0.1
2,033,743 + DVU1959 0.17 +2.4
2,033,751 - DVU1959 0.18 +0.1
2,033,784 + DVU1959 0.19 -0.2
2,033,917 - DVU1959 0.25 -0.2
2,033,917 - DVU1959 0.25 -0.1
2,033,926 - DVU1959 0.25 +1.0
2,033,986 - DVU1959 0.28 -0.3
2,034,021 + DVU1959 0.29 -0.2
2,034,030 - DVU1959 0.29 -0.0
2,034,038 + DVU1959 0.30 -0.5
2,034,103 + DVU1959 0.32 -1.0
2,034,172 + DVU1959 0.35 -0.3
2,034,210 + DVU1959 0.37 -0.5
2,034,231 + DVU1959 0.38 -0.6
2,034,239 - DVU1959 0.38 +0.3
2,034,239 - DVU1959 0.38 +0.2
2,034,270 - DVU1959 0.39 -0.8
2,034,398 + DVU1959 0.45 +0.2
2,034,467 - DVU1959 0.48 +0.6
2,034,540 + DVU1959 0.51 +0.2
2,034,576 - DVU1959 0.52 +1.3
2,034,744 + DVU1959 0.59 -0.5
2,034,745 + DVU1959 0.59 -0.2
2,034,848 - DVU1959 0.64 -0.3
2,034,905 - DVU1959 0.66 -0.2
2,034,923 + DVU1959 0.67 -0.7
2,034,937 + DVU1959 0.67 +0.1
2,034,944 + DVU1959 0.68 +0.1
2,034,959 + DVU1959 0.68 +0.3
2,034,969 + DVU1959 0.69 -0.2
2,034,977 - DVU1959 0.69 +0.2
2,035,000 + DVU1959 0.70 -0.2
2,035,031 - DVU1959 0.71 +0.8
2,035,052 + DVU1959 0.72 +0.7
2,035,105 - DVU1959 0.74 -1.2
2,035,115 - DVU1959 0.75 -0.2
2,035,218 + DVU1959 0.79 +0.4
2,035,391 - DVU1959 0.86 +0.1
2,035,428 - DVU1959 0.88 -0.2
2,035,473 - DVU1959 0.90 +0.5
2,035,487 + -0.1
2,035,650 - -0.9
2,035,802 - -0.1
2,035,822 + +0.8
2,035,846 + -0.2
2,035,881 - +0.6
2,035,884 + -0.2
2,035,892 - -0.5
2,035,892 - +0.0
2,035,933 - +0.1
2,036,073 + -0.0
2,036,080 + -0.9
2,036,088 - +1.1
2,036,304 + cheA-2 DVU1960 0.17 +0.5
2,036,312 - cheA-2 DVU1960 0.18 +3.4
2,036,319 + cheA-2 DVU1960 0.18 +0.6
2,036,451 + cheA-2 DVU1960 0.24 +0.6
2,036,509 + cheA-2 DVU1960 0.27 +1.4
2,036,563 + cheA-2 DVU1960 0.30 +0.6
2,036,581 - cheA-2 DVU1960 0.31 +0.3
2,036,596 - cheA-2 DVU1960 0.31 +1.1
2,036,606 - cheA-2 DVU1960 0.32 -0.6
2,036,606 - cheA-2 DVU1960 0.32 +1.6
2,036,679 + cheA-2 DVU1960 0.35 +0.5

Or see this region's nucleotide sequence