Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1648

Experiment: MoLS4 with L-Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntlysA-1 and DVU1648 are separated by 73 nucleotidesDVU1648 and mutS overlap by 17 nucleotides DVU1647: lysA-1 - diaminopimelate decarboxylase (TIGR), at 1,726,001 to 1,727,239 lysA-1 DVU1648: DVU1648 - lipoprotein, putative (TIGR), at 1,727,313 to 1,727,753 DVU1648 DVU1649: mutS - DNA mismatch repair protein MutS (TIGR), at 1,727,737 to 1,730,454 mutS Position (kb) 1727 1728Strain fitness (log2 ratio) -2 -1 0 1at 1726.417 kb on - strand, within lysA-1at 1726.459 kb on + strand, within lysA-1at 1726.542 kb on - strand, within lysA-1at 1726.631 kb on - strand, within lysA-1at 1726.699 kb on - strand, within lysA-1at 1726.705 kb on - strand, within lysA-1at 1726.757 kb on + strand, within lysA-1at 1726.774 kb on + strand, within lysA-1at 1726.785 kb on + strand, within lysA-1at 1726.810 kb on - strand, within lysA-1at 1726.845 kb on - strand, within lysA-1at 1726.934 kb on + strand, within lysA-1at 1727.003 kb on + strand, within lysA-1at 1727.022 kb on - strand, within lysA-1at 1727.162 kb on + strandat 1727.227 kb on + strandat 1727.259 kb on + strandat 1727.297 kb on + strandat 1727.376 kb on + strand, within DVU1648at 1727.390 kb on + strand, within DVU1648at 1727.457 kb on - strand, within DVU1648at 1727.558 kb on - strand, within DVU1648at 1727.644 kb on - strand, within DVU1648at 1727.705 kb on - strand, within DVU1648at 1727.756 kb on - strandat 1727.848 kb on - strandat 1727.857 kb on + strandat 1727.865 kb on - strandat 1727.869 kb on + strandat 1727.891 kb on + strandat 1727.937 kb on - strandat 1728.075 kb on - strand, within mutSat 1728.082 kb on + strand, within mutSat 1728.153 kb on - strand, within mutSat 1728.161 kb on - strand, within mutSat 1728.174 kb on - strand, within mutSat 1728.272 kb on - strand, within mutSat 1728.370 kb on + strand, within mutSat 1728.602 kb on + strand, within mutSat 1728.655 kb on + strand, within mutSat 1728.663 kb on - strand, within mutS

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
remove
1,726,417 - lysA-1 DVU1647 0.34 +0.7
1,726,459 + lysA-1 DVU1647 0.37 +0.6
1,726,542 - lysA-1 DVU1647 0.44 +0.1
1,726,631 - lysA-1 DVU1647 0.51 -0.2
1,726,699 - lysA-1 DVU1647 0.56 -0.4
1,726,705 - lysA-1 DVU1647 0.57 -0.1
1,726,757 + lysA-1 DVU1647 0.61 -0.5
1,726,774 + lysA-1 DVU1647 0.62 +0.4
1,726,785 + lysA-1 DVU1647 0.63 -0.0
1,726,810 - lysA-1 DVU1647 0.65 -0.8
1,726,845 - lysA-1 DVU1647 0.68 -0.2
1,726,934 + lysA-1 DVU1647 0.75 -0.2
1,727,003 + lysA-1 DVU1647 0.81 -1.0
1,727,022 - lysA-1 DVU1647 0.82 -0.9
1,727,162 + +0.0
1,727,227 + -1.4
1,727,259 + +0.0
1,727,297 + +1.4
1,727,376 + DVU1648 0.14 +0.4
1,727,390 + DVU1648 0.17 -0.6
1,727,457 - DVU1648 0.33 -1.3
1,727,558 - DVU1648 0.56 -0.6
1,727,644 - DVU1648 0.75 -0.8
1,727,705 - DVU1648 0.89 -0.5
1,727,756 - -1.0
1,727,848 - -0.4
1,727,857 + +0.1
1,727,865 - +1.0
1,727,869 + -1.0
1,727,891 + +0.0
1,727,937 - -1.9
1,728,075 - mutS DVU1649 0.12 -0.8
1,728,082 + mutS DVU1649 0.13 -0.2
1,728,153 - mutS DVU1649 0.15 -0.4
1,728,161 - mutS DVU1649 0.16 +1.4
1,728,174 - mutS DVU1649 0.16 -0.2
1,728,272 - mutS DVU1649 0.20 -1.0
1,728,370 + mutS DVU1649 0.23 -0.3
1,728,602 + mutS DVU1649 0.32 -0.6
1,728,655 + mutS DVU1649 0.34 -0.3
1,728,663 - mutS DVU1649 0.34 -0.7

Or see this region's nucleotide sequence