Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1421

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatoC and DVU1420 are separated by 60 nucleotidesDVU1420 and DVU1421 are separated by 199 nucleotidesDVU1421 and DVU1422 are separated by 64 nucleotides DVU1419: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 1,492,844 to 1,494,223 atoC DVU1420: DVU1420 - Hpt domain protein (TIGR), at 1,494,284 to 1,494,655 DVU1420 DVU1421: DVU1421 - hypothetical protein (TIGR), at 1,494,855 to 1,495,316 DVU1421 DVU1422: DVU1422 - OmpA family protein (TIGR), at 1,495,381 to 1,496,454 DVU1422 Position (kb) 1494 1495 1496Strain fitness (log2 ratio) -2 -1 0 1 2at 1493.964 kb on + strand, within atoCat 1493.994 kb on - strand, within atoCat 1494.114 kb on + strandat 1494.155 kb on + strandat 1494.236 kb on + strandat 1494.236 kb on + strandat 1494.272 kb on + strandat 1494.279 kb on + strandat 1494.360 kb on - strand, within DVU1420at 1494.693 kb on - strandat 1494.732 kb on - strandat 1494.732 kb on - strandat 1494.732 kb on - strandat 1494.736 kb on + strandat 1494.927 kb on + strand, within DVU1421at 1495.123 kb on - strand, within DVU1421at 1495.154 kb on - strand, within DVU1421at 1495.159 kb on - strand, within DVU1421at 1495.371 kb on + strandat 1495.521 kb on - strand, within DVU1422at 1495.835 kb on + strand, within DVU1422

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,493,964 + atoC DVU1419 0.81 +1.8
1,493,994 - atoC DVU1419 0.83 -0.4
1,494,114 + +1.1
1,494,155 + +0.7
1,494,236 + -0.4
1,494,236 + -2.6
1,494,272 + +0.0
1,494,279 + -0.7
1,494,360 - DVU1420 0.20 -0.1
1,494,693 - -0.4
1,494,732 - -0.2
1,494,732 - -0.3
1,494,732 - -0.3
1,494,736 + -0.1
1,494,927 + DVU1421 0.16 -0.8
1,495,123 - DVU1421 0.58 -0.0
1,495,154 - DVU1421 0.65 -0.3
1,495,159 - DVU1421 0.66 +0.1
1,495,371 + +0.1
1,495,521 - DVU1422 0.13 +0.4
1,495,835 + DVU1422 0.42 +0.4

Or see this region's nucleotide sequence