Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1365

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfbB and DVU1365 are separated by 187 nucleotidesDVU1365 and DVU1366 are separated by 160 nucleotides DVU1364: rfbB - dTDP-glucose 4,6-dehydratase (TIGR), at 1,442,920 to 1,443,942 rfbB DVU1365: DVU1365 - heme-binding protein, putative (TIGR), at 1,444,130 to 1,444,978 DVU1365 DVU1366: DVU1366 - lipoprotein, putative (TIGR), at 1,445,139 to 1,446,044 DVU1366 Position (kb) 1444 1445Strain fitness (log2 ratio) -2 -1 0 1at 1444.147 kb on + strandat 1444.161 kb on - strandat 1444.964 kb on + strandat 1444.966 kb on - strandat 1445.183 kb on - strandat 1445.186 kb on + strandat 1445.217 kb on - strandat 1445.273 kb on - strand, within DVU1366at 1445.319 kb on - strand, within DVU1366at 1445.332 kb on + strand, within DVU1366at 1445.426 kb on + strand, within DVU1366at 1445.426 kb on + strand, within DVU1366at 1445.438 kb on + strand, within DVU1366at 1445.438 kb on + strand, within DVU1366at 1445.438 kb on + strand, within DVU1366at 1445.446 kb on - strand, within DVU1366at 1445.446 kb on - strand, within DVU1366at 1445.554 kb on + strand, within DVU1366at 1445.556 kb on + strand, within DVU1366at 1445.637 kb on - strand, within DVU1366at 1445.640 kb on + strand, within DVU1366at 1445.822 kb on + strand, within DVU1366at 1445.842 kb on - strand, within DVU1366at 1445.847 kb on - strand, within DVU1366at 1445.848 kb on + strand, within DVU1366at 1445.897 kb on - strand, within DVU1366at 1445.899 kb on + strand, within DVU1366at 1445.907 kb on - strand, within DVU1366at 1445.912 kb on - strand, within DVU1366at 1445.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,444,147 + -0.2
1,444,161 - +0.1
1,444,964 + -1.4
1,444,966 - -0.6
1,445,183 - -2.0
1,445,186 + -1.9
1,445,217 - -1.7
1,445,273 - DVU1366 0.15 -2.0
1,445,319 - DVU1366 0.20 -1.4
1,445,332 + DVU1366 0.21 -1.7
1,445,426 + DVU1366 0.32 -1.2
1,445,426 + DVU1366 0.32 -1.9
1,445,438 + DVU1366 0.33 -2.0
1,445,438 + DVU1366 0.33 -1.6
1,445,438 + DVU1366 0.33 -2.1
1,445,446 - DVU1366 0.34 -0.2
1,445,446 - DVU1366 0.34 -2.0
1,445,554 + DVU1366 0.46 -1.7
1,445,556 + DVU1366 0.46 -2.3
1,445,637 - DVU1366 0.55 -1.0
1,445,640 + DVU1366 0.55 -0.6
1,445,822 + DVU1366 0.75 -1.2
1,445,842 - DVU1366 0.78 +1.2
1,445,847 - DVU1366 0.78 +1.5
1,445,848 + DVU1366 0.78 -2.0
1,445,897 - DVU1366 0.84 -0.3
1,445,899 + DVU1366 0.84 -1.7
1,445,907 - DVU1366 0.85 -1.3
1,445,912 - DVU1366 0.85 -0.9
1,445,955 + -1.7

Or see this region's nucleotide sequence