Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0914

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0912 and DVU0913 are separated by 76 nucleotidesDVU0913 and cobS are separated by 70 nucleotidescobS and DVU0915 are separated by 378 nucleotides DVU0912: DVU0912 - conserved domain protein (TIGR), at 1,006,702 to 1,007,286 DVU0912 DVU0913: DVU0913 - conserved hypothetical protein (TIGR), at 1,007,363 to 1,007,800 DVU0913 DVU0914: cobS - cobalamin-5-phosphate synthase (TIGR), at 1,007,871 to 1,008,608 cobS DVU0915: DVU0915 - conserved hypothetical protein (TIGR), at 1,008,987 to 1,009,775 DVU0915 Position (kb) 1007 1008 1009Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1006.921 kb on + strand, within DVU0912at 1006.931 kb on + strand, within DVU0912at 1007.188 kb on + strand, within DVU0912at 1007.222 kb on + strand, within DVU0912at 1007.222 kb on + strand, within DVU0912at 1007.285 kb on + strandat 1007.295 kb on + strandat 1007.303 kb on - strandat 1007.547 kb on + strand, within DVU0913at 1007.555 kb on - strand, within DVU0913at 1007.576 kb on + strand, within DVU0913at 1007.584 kb on - strand, within DVU0913at 1007.584 kb on - strand, within DVU0913at 1007.690 kb on - strand, within DVU0913at 1007.709 kb on + strand, within DVU0913at 1007.717 kb on - strand, within DVU0913at 1007.717 kb on - strand, within DVU0913at 1007.724 kb on + strand, within DVU0913at 1007.778 kb on + strandat 1007.798 kb on - strandat 1007.823 kb on - strandat 1007.843 kb on + strandat 1007.902 kb on - strandat 1007.926 kb on + strandat 1007.989 kb on + strand, within cobSat 1008.097 kb on + strand, within cobSat 1008.146 kb on - strand, within cobSat 1008.158 kb on + strand, within cobSat 1008.204 kb on - strand, within cobSat 1008.237 kb on + strand, within cobSat 1008.281 kb on - strand, within cobSat 1008.406 kb on + strand, within cobSat 1008.414 kb on - strand, within cobSat 1008.525 kb on - strand, within cobSat 1008.612 kb on - strandat 1008.693 kb on + strandat 1008.698 kb on + strandat 1008.707 kb on + strandat 1008.715 kb on - strandat 1008.724 kb on + strandat 1008.807 kb on - strandat 1008.809 kb on + strandat 1008.812 kb on - strandat 1008.889 kb on - strandat 1008.915 kb on - strandat 1008.927 kb on - strandat 1008.964 kb on - strandat 1008.965 kb on + strandat 1008.975 kb on + strandat 1009.123 kb on + strand, within DVU0915at 1009.131 kb on - strand, within DVU0915at 1009.138 kb on - strand, within DVU0915at 1009.250 kb on - strand, within DVU0915at 1009.278 kb on - strand, within DVU0915at 1009.312 kb on + strand, within DVU0915at 1009.472 kb on + strand, within DVU0915at 1009.485 kb on - strand, within DVU0915at 1009.543 kb on - strand, within DVU0915at 1009.543 kb on - strand, within DVU0915

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,006,921 + DVU0912 0.37 -0.9
1,006,931 + DVU0912 0.39 -0.7
1,007,188 + DVU0912 0.83 -0.1
1,007,222 + DVU0912 0.89 -0.8
1,007,222 + DVU0912 0.89 -0.5
1,007,285 + -1.2
1,007,295 + -0.7
1,007,303 - -0.3
1,007,547 + DVU0913 0.42 -0.7
1,007,555 - DVU0913 0.44 -0.9
1,007,576 + DVU0913 0.49 -3.3
1,007,584 - DVU0913 0.50 -2.1
1,007,584 - DVU0913 0.50 -1.9
1,007,690 - DVU0913 0.75 -1.2
1,007,709 + DVU0913 0.79 -1.3
1,007,717 - DVU0913 0.81 -0.5
1,007,717 - DVU0913 0.81 -1.3
1,007,724 + DVU0913 0.82 -1.1
1,007,778 + -0.7
1,007,798 - +0.5
1,007,823 - -0.2
1,007,843 + +0.9
1,007,902 - -5.4
1,007,926 + -1.0
1,007,989 + cobS DVU0914 0.16 -3.2
1,008,097 + cobS DVU0914 0.31 -1.0
1,008,146 - cobS DVU0914 0.37 -1.3
1,008,158 + cobS DVU0914 0.39 -4.6
1,008,204 - cobS DVU0914 0.45 +2.5
1,008,237 + cobS DVU0914 0.50 -0.1
1,008,281 - cobS DVU0914 0.56 -0.5
1,008,406 + cobS DVU0914 0.72 -1.6
1,008,414 - cobS DVU0914 0.74 -2.1
1,008,525 - cobS DVU0914 0.89 +0.1
1,008,612 - +0.2
1,008,693 + -0.4
1,008,698 + -0.4
1,008,707 + -0.1
1,008,715 - -0.0
1,008,724 + -0.1
1,008,807 - -0.0
1,008,809 + -0.2
1,008,812 - +0.2
1,008,889 - -0.2
1,008,915 - -0.6
1,008,927 - +1.6
1,008,964 - -0.1
1,008,965 + -0.3
1,008,975 + +0.1
1,009,123 + DVU0915 0.17 +1.0
1,009,131 - DVU0915 0.18 +0.5
1,009,138 - DVU0915 0.19 -0.2
1,009,250 - DVU0915 0.33 -0.2
1,009,278 - DVU0915 0.37 +0.4
1,009,312 + DVU0915 0.41 -0.1
1,009,472 + DVU0915 0.61 -0.7
1,009,485 - DVU0915 0.63 +0.6
1,009,543 - DVU0915 0.70 +0.5
1,009,543 - DVU0915 0.70 -0.9

Or see this region's nucleotide sequence