Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0772

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0771 and DVU0772 are separated by 241 nucleotidesDVU0772 and DVU0773 are separated by 275 nucleotidesDVU0773 and atpC are separated by 126 nucleotides DVU0771: DVU0771 - molybdenum-pterin binding domain protein/site-specific recombinase, phage integrase family (TIGR), at 862,088 to 863,158 DVU0771 DVU0772: DVU0772 - hypothetical protein (TIGR), at 863,400 to 863,747 DVU0772 DVU0773: DVU0773 - hypothetical protein (TIGR), at 864,023 to 864,262 DVU0773 DVU0774: atpC - ATP synthase, F1 epsilon subunit (TIGR), at 864,389 to 864,793 atpC Position (kb) 863 864Strain fitness (log2 ratio) -2 -1 0 1 2at 862.443 kb on - strand, within DVU0771at 862.483 kb on - strand, within DVU0771at 862.516 kb on + strand, within DVU0771at 862.517 kb on + strand, within DVU0771at 862.523 kb on - strand, within DVU0771at 862.579 kb on - strand, within DVU0771at 862.600 kb on - strand, within DVU0771at 862.609 kb on + strand, within DVU0771at 862.754 kb on - strand, within DVU0771at 862.770 kb on + strand, within DVU0771at 862.778 kb on - strand, within DVU0771at 862.796 kb on + strand, within DVU0771at 862.888 kb on + strand, within DVU0771at 863.007 kb on - strand, within DVU0771at 863.009 kb on + strand, within DVU0771at 863.084 kb on - strandat 863.085 kb on + strandat 863.113 kb on - strandat 863.161 kb on - strandat 863.396 kb on + strandat 863.424 kb on - strandat 863.430 kb on + strandat 863.562 kb on + strand, within DVU0772at 863.570 kb on - strand, within DVU0772at 863.590 kb on - strand, within DVU0772at 863.640 kb on - strand, within DVU0772at 863.740 kb on - strandat 863.832 kb on - strandat 863.832 kb on - strandat 863.832 kb on - strandat 863.929 kb on - strandat 863.957 kb on + strandat 863.965 kb on - strandat 863.965 kb on - strandat 863.965 kb on - strandat 863.965 kb on - strandat 863.965 kb on - strandat 863.998 kb on + strandat 863.998 kb on + strandat 864.219 kb on + strand, within DVU0773at 864.252 kb on + strandat 864.341 kb on - strandat 864.380 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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862,443 - DVU0771 0.33 +0.8
862,483 - DVU0771 0.37 -0.7
862,516 + DVU0771 0.40 -0.1
862,517 + DVU0771 0.40 -0.1
862,523 - DVU0771 0.41 -0.2
862,579 - DVU0771 0.46 +0.6
862,600 - DVU0771 0.48 -0.2
862,609 + DVU0771 0.49 +1.4
862,754 - DVU0771 0.62 -0.0
862,770 + DVU0771 0.64 +0.5
862,778 - DVU0771 0.64 +0.4
862,796 + DVU0771 0.66 -0.6
862,888 + DVU0771 0.75 -1.0
863,007 - DVU0771 0.86 +0.0
863,009 + DVU0771 0.86 -1.7
863,084 - -0.6
863,085 + +0.4
863,113 - -1.1
863,161 - -0.5
863,396 + -0.7
863,424 - +0.3
863,430 + -0.8
863,562 + DVU0772 0.47 -1.5
863,570 - DVU0772 0.49 -0.1
863,590 - DVU0772 0.55 +0.1
863,640 - DVU0772 0.69 -0.6
863,740 - -1.8
863,832 - -0.2
863,832 - -1.6
863,832 - +0.6
863,929 - -0.3
863,957 + +0.7
863,965 - -0.7
863,965 - -0.0
863,965 - -0.3
863,965 - -0.1
863,965 - -0.0
863,998 + -1.0
863,998 + +0.1
864,219 + DVU0773 0.82 -1.3
864,252 + -0.8
864,341 - +1.1
864,380 + +2.4

Or see this region's nucleotide sequence