Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3799 and Rru_A3800 are separated by 18 nucleotides Rru_A3800 and Rru_A3801 are separated by 111 nucleotides Rru_A3801 and Rru_A3802 are separated by 142 nucleotides
Rru_A3799: Rru_A3799 - DNA-formamidopyrimidine glycosylase (NCBI), at 4,349,659 to 4,350,504
_A3799
Rru_A3800: Rru_A3800 - hypothetical protein (NCBI), at 4,350,523 to 4,350,984
_A3800
Rru_A3801: Rru_A3801 - Enoyl-CoA hydratase/isomerase (NCBI), at 4,351,096 to 4,351,872
_A3801
Rru_A3802: Rru_A3802 - Ribosomal protein S20p (NCBI), at 4,352,015 to 4,352,281
_A3802
Position (kb) 4351
4352 Strain fitness (log2 ratio) -2
-1
0
1 at 4350.183 kb on + strand, within Rru_A3799 at 4350.183 kb on + strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.187 kb on + strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.361 kb on + strand, within Rru_A3799 at 4350.362 kb on - strand, within Rru_A3799 at 4350.386 kb on - strand, within Rru_A3799 at 4350.510 kb on + strand at 4350.510 kb on + strand at 4350.510 kb on + strand at 4350.565 kb on + strand at 4350.627 kb on - strand, within Rru_A3800 at 4350.845 kb on - strand, within Rru_A3800 at 4350.845 kb on - strand, within Rru_A3800 at 4351.070 kb on + strand at 4351.070 kb on + strand at 4351.070 kb on + strand at 4351.070 kb on + strand at 4351.071 kb on - strand at 4351.318 kb on + strand, within Rru_A3801 at 4351.319 kb on - strand, within Rru_A3801 at 4351.319 kb on - strand, within Rru_A3801 at 4351.320 kb on + strand, within Rru_A3801 at 4351.928 kb on + strand at 4351.930 kb on + strand at 4352.280 kb on - strand at 4352.280 kb on - strand at 4352.430 kb on + strand at 4352.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 4,350,183 + Rru_A3799 0.62 +0.4 4,350,183 + Rru_A3799 0.62 +0.1 4,350,184 - Rru_A3799 0.62 +0.3 4,350,184 - Rru_A3799 0.62 -0.3 4,350,184 - Rru_A3799 0.62 +0.2 4,350,184 - Rru_A3799 0.62 -0.1 4,350,187 + Rru_A3799 0.62 -0.5 4,350,188 - Rru_A3799 0.63 +0.1 4,350,188 - Rru_A3799 0.63 -0.1 4,350,188 - Rru_A3799 0.63 -0.2 4,350,188 - Rru_A3799 0.63 +0.2 4,350,188 - Rru_A3799 0.63 -2.1 4,350,188 - Rru_A3799 0.63 +0.7 4,350,188 - Rru_A3799 0.63 -0.4 4,350,188 - Rru_A3799 0.63 +0.2 4,350,361 + Rru_A3799 0.83 +0.1 4,350,362 - Rru_A3799 0.83 +0.1 4,350,386 - Rru_A3799 0.86 +0.1 4,350,510 + -0.1 4,350,510 + +0.0 4,350,510 + -0.3 4,350,565 + -0.4 4,350,627 - Rru_A3800 0.23 +0.9 4,350,845 - Rru_A3800 0.70 -0.8 4,350,845 - Rru_A3800 0.70 -1.3 4,351,070 + -0.4 4,351,070 + -0.9 4,351,070 + -0.3 4,351,070 + -0.0 4,351,071 - -0.6 4,351,318 + Rru_A3801 0.29 -1.8 4,351,319 - Rru_A3801 0.29 -2.2 4,351,319 - Rru_A3801 0.29 -0.7 4,351,320 + Rru_A3801 0.29 -1.3 4,351,928 + -1.1 4,351,930 + +0.7 4,352,280 - +0.2 4,352,280 - -0.6 4,352,430 + +1.6 4,352,702 + -2.4
Or see this region's nucleotide sequence