Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3676 and Rru_A3677 overlap by 4 nucleotides Rru_A3677 and Rru_A3678 are separated by 129 nucleotides Rru_A3678 and Rru_A3679 are separated by 188 nucleotides
Rru_A3676: Rru_A3676 - TRAP dicarboxylate transporter, DctM subunit (NCBI), at 4,223,390 to 4,224,673
_A3676
Rru_A3677: Rru_A3677 - Tripartite ATP-independent periplasmic transporter, DctQ component (NCBI), at 4,224,670 to 4,225,395
_A3677
Rru_A3678: Rru_A3678 - TRAP dicarboxylate transporter- DctP subunit (NCBI), at 4,225,525 to 4,226,520
_A3678
Rru_A3679: Rru_A3679 - Rod shape-determining protein RodA (NCBI), at 4,226,709 to 4,227,839
_A3679
Position (kb) 4225
4226
4227 Strain fitness (log2 ratio) -2
-1
0
1 at 4224.938 kb on + strand, within Rru_A3677 at 4224.987 kb on - strand, within Rru_A3677 at 4225.193 kb on + strand, within Rru_A3677 at 4225.274 kb on + strand, within Rru_A3677 at 4225.274 kb on + strand, within Rru_A3677 at 4225.275 kb on - strand, within Rru_A3677 at 4225.280 kb on + strand, within Rru_A3677 at 4225.526 kb on + strand at 4225.526 kb on + strand at 4225.527 kb on - strand at 4225.527 kb on - strand at 4225.527 kb on - strand at 4225.527 kb on - strand at 4225.527 kb on - strand at 4225.544 kb on + strand at 4225.873 kb on - strand, within Rru_A3678 at 4225.874 kb on + strand, within Rru_A3678 at 4225.874 kb on + strand, within Rru_A3678 at 4225.874 kb on + strand, within Rru_A3678 at 4225.874 kb on + strand, within Rru_A3678 at 4225.874 kb on + strand, within Rru_A3678 at 4225.874 kb on + strand, within Rru_A3678 at 4225.874 kb on + strand, within Rru_A3678 at 4225.874 kb on + strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.875 kb on - strand, within Rru_A3678 at 4225.931 kb on + strand, within Rru_A3678 at 4226.090 kb on + strand, within Rru_A3678 at 4226.192 kb on + strand, within Rru_A3678 at 4226.192 kb on + strand, within Rru_A3678 at 4226.192 kb on + strand, within Rru_A3678 at 4226.193 kb on - strand, within Rru_A3678 at 4226.193 kb on - strand, within Rru_A3678 at 4226.309 kb on + strand, within Rru_A3678 at 4226.310 kb on - strand, within Rru_A3678 at 4226.310 kb on - strand, within Rru_A3678 at 4226.310 kb on - strand, within Rru_A3678 at 4226.310 kb on - strand, within Rru_A3678 at 4226.327 kb on + strand, within Rru_A3678 at 4226.433 kb on + strand at 4226.434 kb on - strand at 4226.518 kb on + strand at 4226.521 kb on - strand at 4226.521 kb on - strand at 4226.521 kb on - strand at 4226.545 kb on - strand at 4226.635 kb on + strand at 4226.638 kb on - strand at 4226.638 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 4,224,938 + Rru_A3677 0.37 -0.7 4,224,987 - Rru_A3677 0.44 -1.2 4,225,193 + Rru_A3677 0.72 -0.3 4,225,274 + Rru_A3677 0.83 -0.1 4,225,274 + Rru_A3677 0.83 -0.0 4,225,275 - Rru_A3677 0.83 +0.9 4,225,280 + Rru_A3677 0.84 -1.2 4,225,526 + -0.1 4,225,526 + -0.5 4,225,527 - -1.4 4,225,527 - -0.5 4,225,527 - +0.3 4,225,527 - +0.0 4,225,527 - -0.3 4,225,544 + -0.3 4,225,873 - Rru_A3678 0.35 -0.5 4,225,874 + Rru_A3678 0.35 -0.8 4,225,874 + Rru_A3678 0.35 +1.5 4,225,874 + Rru_A3678 0.35 -0.1 4,225,874 + Rru_A3678 0.35 +0.1 4,225,874 + Rru_A3678 0.35 +0.2 4,225,874 + Rru_A3678 0.35 -1.4 4,225,874 + Rru_A3678 0.35 -0.5 4,225,874 + Rru_A3678 0.35 +0.0 4,225,875 - Rru_A3678 0.35 -0.6 4,225,875 - Rru_A3678 0.35 -0.6 4,225,875 - Rru_A3678 0.35 -1.5 4,225,875 - Rru_A3678 0.35 -0.9 4,225,875 - Rru_A3678 0.35 -0.1 4,225,875 - Rru_A3678 0.35 -0.5 4,225,875 - Rru_A3678 0.35 +0.1 4,225,875 - Rru_A3678 0.35 -0.6 4,225,875 - Rru_A3678 0.35 +0.5 4,225,875 - Rru_A3678 0.35 -0.7 4,225,875 - Rru_A3678 0.35 +0.0 4,225,875 - Rru_A3678 0.35 -0.7 4,225,875 - Rru_A3678 0.35 -0.1 4,225,931 + Rru_A3678 0.41 -1.4 4,226,090 + Rru_A3678 0.57 -0.5 4,226,192 + Rru_A3678 0.67 +1.3 4,226,192 + Rru_A3678 0.67 -1.5 4,226,192 + Rru_A3678 0.67 -0.7 4,226,193 - Rru_A3678 0.67 -0.1 4,226,193 - Rru_A3678 0.67 +0.4 4,226,309 + Rru_A3678 0.79 -0.8 4,226,310 - Rru_A3678 0.79 -0.5 4,226,310 - Rru_A3678 0.79 -0.6 4,226,310 - Rru_A3678 0.79 -2.2 4,226,310 - Rru_A3678 0.79 -1.3 4,226,327 + Rru_A3678 0.81 +0.4 4,226,433 + -0.9 4,226,434 - -0.9 4,226,518 + -0.7 4,226,521 - +0.9 4,226,521 - +0.3 4,226,521 - -1.1 4,226,545 - -1.0 4,226,635 + -0.3 4,226,638 - +0.0 4,226,638 - -0.1
Or see this region's nucleotide sequence