Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0750

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0749 and Rru_A0750 overlap by 4 nucleotidesRru_A0750 and Rru_A0751 overlap by 4 nucleotides Rru_A0749: Rru_A0749 - Glutamyl-tRNA reductase (NCBI), at 877,689 to 879,014 _A0749 Rru_A0750: Rru_A0750 - Peptide chain release factor 1 (NCBI), at 879,011 to 880,075 _A0750 Rru_A0751: Rru_A0751 - Modification methylase HemK (NCBI), at 880,072 to 881,049 _A0751 Position (kb) 879 880 881Strain fitness (log2 ratio) -1 0 1at 880.142 kb on + strandat 880.143 kb on - strandat 880.995 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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880,142 + -1.7
880,143 - -0.7
880,995 + +0.1

Or see this region's nucleotide sequence