Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0551 and Rru_A0552 overlap by 122 nucleotides Rru_A0552 and Rru_A0553 are separated by 264 nucleotides
Rru_A0551: Rru_A0551 - TPR domain protein (NCBI), at 651,316 to 652,941
_A0551
Rru_A0552: Rru_A0552 - GCN5-related N-acetyltransferase (NCBI), at 652,820 to 653,449
_A0552
Rru_A0553: Rru_A0553 - Response Regulator Receiver Signal Transduction Histidine Kinase (NCBI), at 653,714 to 655,036
_A0553
Position (kb) 652
653
654 Strain fitness (log2 ratio) -1
0
1
2 at 652.055 kb on - strand, within Rru_A0551 at 652.355 kb on - strand, within Rru_A0551 at 652.692 kb on + strand, within Rru_A0551 at 652.693 kb on - strand, within Rru_A0551 at 652.693 kb on - strand, within Rru_A0551 at 652.693 kb on - strand, within Rru_A0551 at 652.693 kb on - strand, within Rru_A0551 at 652.693 kb on - strand, within Rru_A0551 at 652.694 kb on - strand, within Rru_A0551 at 652.761 kb on - strand, within Rru_A0551 at 652.761 kb on - strand, within Rru_A0551 at 652.821 kb on + strand at 652.821 kb on + strand at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.248 kb on - strand, within Rru_A0552 at 653.248 kb on - strand, within Rru_A0552 at 653.485 kb on + strand at 653.485 kb on + strand at 653.485 kb on + strand at 653.486 kb on - strand at 653.486 kb on - strand at 653.537 kb on + strand at 653.537 kb on + strand at 653.568 kb on + strand at 653.568 kb on + strand at 653.569 kb on - strand at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.321 kb on + strand, within Rru_A0553 at 654.322 kb on - strand, within Rru_A0553
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 652,055 - Rru_A0551 0.45 -0.2 652,355 - Rru_A0551 0.64 +0.4 652,692 + Rru_A0551 0.85 +0.4 652,693 - Rru_A0551 0.85 +0.8 652,693 - Rru_A0551 0.85 +0.3 652,693 - Rru_A0551 0.85 +0.7 652,693 - Rru_A0551 0.85 -0.1 652,693 - Rru_A0551 0.85 -0.2 652,694 - Rru_A0551 0.85 -0.6 652,761 - Rru_A0551 0.89 +0.2 652,761 - Rru_A0551 0.89 -1.0 652,821 + +1.4 652,821 + +0.5 653,246 - Rru_A0552 0.68 +0.8 653,246 - Rru_A0552 0.68 +0.1 653,246 - Rru_A0552 0.68 +0.3 653,246 - Rru_A0552 0.68 -0.4 653,246 - Rru_A0552 0.68 +0.1 653,246 - Rru_A0552 0.68 +0.4 653,246 - Rru_A0552 0.68 +1.8 653,247 + Rru_A0552 0.68 -0.3 653,247 + Rru_A0552 0.68 -0.5 653,247 + Rru_A0552 0.68 +0.4 653,247 + Rru_A0552 0.68 -0.0 653,247 + Rru_A0552 0.68 -0.0 653,247 + Rru_A0552 0.68 +0.4 653,247 + Rru_A0552 0.68 -0.0 653,247 + Rru_A0552 0.68 +1.0 653,247 + Rru_A0552 0.68 -0.4 653,248 - Rru_A0552 0.68 -0.2 653,248 - Rru_A0552 0.68 +0.6 653,485 + +0.5 653,485 + +0.4 653,485 + -0.0 653,486 - -0.1 653,486 - -0.2 653,537 + +0.0 653,537 + -0.5 653,568 + +0.4 653,568 + -0.0 653,569 - +0.0 654,319 + Rru_A0553 0.46 -1.4 654,319 + Rru_A0553 0.46 -0.4 654,319 + Rru_A0553 0.46 +1.0 654,319 + Rru_A0553 0.46 +0.7 654,319 + Rru_A0553 0.46 -0.3 654,319 + Rru_A0553 0.46 +0.1 654,319 + Rru_A0553 0.46 -0.5 654,319 + Rru_A0553 0.46 -0.0 654,320 - Rru_A0553 0.46 -0.3 654,320 - Rru_A0553 0.46 +0.6 654,320 - Rru_A0553 0.46 -0.7 654,321 + Rru_A0553 0.46 -0.4 654,322 - Rru_A0553 0.46 -0.1
Or see this region's nucleotide sequence