Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0330 and Rru_A0331 are separated by 54 nucleotides Rru_A0331 and Rru_A0332 are separated by 69 nucleotides Rru_A0332 and Rru_A0333 are separated by 158 nucleotides
Rru_A0330: Rru_A0330 - Transcriptional Regulator, LysR family (NCBI), at 402,053 to 403,063
_A0330
Rru_A0331: Rru_A0331 - Protein of unknown function DUF6, transmembrane (NCBI), at 403,118 to 404,086
_A0331
Rru_A0332: Rru_A0332 - Glutathione S-transferase-like (NCBI), at 404,156 to 404,845
_A0332
Rru_A0333: Rru_A0333 - Ferritin and Dps (NCBI), at 405,004 to 405,480
_A0333
Position (kb) 403
404
405 Strain fitness (log2 ratio) -1
0
1
2 at 402.537 kb on + strand, within Rru_A0330 at 402.537 kb on + strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.988 kb on - strand at 402.989 kb on + strand at 402.989 kb on + strand at 402.990 kb on - strand at 403.049 kb on + strand at 403.050 kb on - strand at 403.238 kb on + strand, within Rru_A0331 at 403.238 kb on + strand, within Rru_A0331 at 403.238 kb on + strand, within Rru_A0331 at 403.238 kb on + strand, within Rru_A0331 at 403.238 kb on + strand, within Rru_A0331 at 403.238 kb on + strand, within Rru_A0331 at 403.239 kb on - strand, within Rru_A0331 at 403.239 kb on - strand, within Rru_A0331 at 403.239 kb on - strand, within Rru_A0331 at 403.239 kb on - strand, within Rru_A0331 at 403.244 kb on + strand, within Rru_A0331 at 403.245 kb on - strand, within Rru_A0331 at 403.245 kb on - strand, within Rru_A0331 at 403.327 kb on - strand, within Rru_A0331 at 403.327 kb on - strand, within Rru_A0331 at 403.327 kb on - strand, within Rru_A0331 at 403.415 kb on + strand, within Rru_A0331 at 403.415 kb on + strand, within Rru_A0331 at 403.415 kb on + strand, within Rru_A0331 at 403.415 kb on + strand, within Rru_A0331 at 403.416 kb on - strand, within Rru_A0331 at 403.416 kb on - strand, within Rru_A0331 at 403.478 kb on + strand, within Rru_A0331 at 403.478 kb on + strand, within Rru_A0331 at 403.479 kb on - strand, within Rru_A0331 at 403.562 kb on + strand, within Rru_A0331 at 403.562 kb on + strand, within Rru_A0331 at 403.562 kb on + strand, within Rru_A0331 at 403.562 kb on + strand, within Rru_A0331 at 403.562 kb on + strand, within Rru_A0331 at 403.563 kb on - strand, within Rru_A0331 at 403.563 kb on - strand, within Rru_A0331 at 403.563 kb on - strand, within Rru_A0331 at 403.661 kb on + strand, within Rru_A0331 at 403.661 kb on + strand, within Rru_A0331 at 403.662 kb on - strand, within Rru_A0331 at 403.662 kb on - strand, within Rru_A0331 at 403.679 kb on + strand, within Rru_A0331 at 403.679 kb on + strand, within Rru_A0331 at 403.680 kb on - strand, within Rru_A0331 at 403.802 kb on - strand, within Rru_A0331 at 403.866 kb on + strand, within Rru_A0331 at 403.866 kb on + strand, within Rru_A0331 at 403.867 kb on - strand, within Rru_A0331 at 403.867 kb on - strand, within Rru_A0331 at 403.867 kb on - strand, within Rru_A0331 at 403.867 kb on - strand, within Rru_A0331 at 404.108 kb on + strand at 404.108 kb on + strand at 404.159 kb on + strand at 404.159 kb on + strand at 404.159 kb on + strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.169 kb on - strand at 404.169 kb on - strand at 404.169 kb on - strand at 404.172 kb on - strand at 404.231 kb on + strand, within Rru_A0332 at 404.231 kb on + strand, within Rru_A0332 at 404.231 kb on + strand, within Rru_A0332 at 404.232 kb on - strand, within Rru_A0332 at 404.232 kb on - strand, within Rru_A0332 at 404.232 kb on - strand, within Rru_A0332 at 404.233 kb on + strand, within Rru_A0332 at 404.387 kb on + strand, within Rru_A0332 at 404.388 kb on - strand, within Rru_A0332 at 404.516 kb on + strand, within Rru_A0332 at 404.537 kb on + strand, within Rru_A0332 at 404.552 kb on + strand, within Rru_A0332 at 404.612 kb on + strand, within Rru_A0332 at 404.628 kb on - strand, within Rru_A0332 at 404.797 kb on + strand at 404.797 kb on + strand at 405.019 kb on - strand at 405.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 402,537 + Rru_A0330 0.48 +0.6 402,537 + Rru_A0330 0.48 -0.6 402,538 - Rru_A0330 0.48 -1.6 402,538 - Rru_A0330 0.48 +0.1 402,538 - Rru_A0330 0.48 -0.5 402,538 - Rru_A0330 0.48 -0.3 402,538 - Rru_A0330 0.48 -0.1 402,538 - Rru_A0330 0.48 +0.1 402,988 - +0.1 402,989 + -0.0 402,989 + -1.1 402,990 - +0.3 403,049 + -0.3 403,050 - -0.2 403,238 + Rru_A0331 0.12 -0.1 403,238 + Rru_A0331 0.12 -0.3 403,238 + Rru_A0331 0.12 +0.2 403,238 + Rru_A0331 0.12 +0.1 403,238 + Rru_A0331 0.12 +0.3 403,238 + Rru_A0331 0.12 +0.4 403,239 - Rru_A0331 0.12 -0.1 403,239 - Rru_A0331 0.12 +1.0 403,239 - Rru_A0331 0.12 +0.1 403,239 - Rru_A0331 0.12 -0.5 403,244 + Rru_A0331 0.13 +0.7 403,245 - Rru_A0331 0.13 +0.7 403,245 - Rru_A0331 0.13 -0.8 403,327 - Rru_A0331 0.22 -0.2 403,327 - Rru_A0331 0.22 -0.3 403,327 - Rru_A0331 0.22 +0.1 403,415 + Rru_A0331 0.31 -0.5 403,415 + Rru_A0331 0.31 -0.4 403,415 + Rru_A0331 0.31 -0.4 403,415 + Rru_A0331 0.31 -0.2 403,416 - Rru_A0331 0.31 +0.3 403,416 - Rru_A0331 0.31 -0.6 403,478 + Rru_A0331 0.37 -0.1 403,478 + Rru_A0331 0.37 +1.3 403,479 - Rru_A0331 0.37 -0.3 403,562 + Rru_A0331 0.46 +0.6 403,562 + Rru_A0331 0.46 +0.2 403,562 + Rru_A0331 0.46 -0.5 403,562 + Rru_A0331 0.46 +0.4 403,562 + Rru_A0331 0.46 +0.1 403,563 - Rru_A0331 0.46 -0.0 403,563 - Rru_A0331 0.46 +0.1 403,563 - Rru_A0331 0.46 +0.0 403,661 + Rru_A0331 0.56 +0.1 403,661 + Rru_A0331 0.56 +0.4 403,662 - Rru_A0331 0.56 -0.0 403,662 - Rru_A0331 0.56 +0.0 403,679 + Rru_A0331 0.58 +0.2 403,679 + Rru_A0331 0.58 -0.6 403,680 - Rru_A0331 0.58 -0.2 403,802 - Rru_A0331 0.71 -0.8 403,866 + Rru_A0331 0.77 -0.5 403,866 + Rru_A0331 0.77 +1.0 403,867 - Rru_A0331 0.77 -0.5 403,867 - Rru_A0331 0.77 -0.4 403,867 - Rru_A0331 0.77 +1.2 403,867 - Rru_A0331 0.77 +1.0 404,108 + -0.4 404,108 + -0.2 404,159 + -1.0 404,159 + +0.3 404,159 + -0.2 404,160 - -0.6 404,160 - -0.3 404,160 - -0.1 404,160 - +0.5 404,160 - -0.2 404,160 - -0.1 404,160 - +0.2 404,169 - -1.4 404,169 - -0.0 404,169 - +0.4 404,172 - +1.9 404,231 + Rru_A0332 0.11 -0.6 404,231 + Rru_A0332 0.11 +0.3 404,231 + Rru_A0332 0.11 +0.3 404,232 - Rru_A0332 0.11 +0.8 404,232 - Rru_A0332 0.11 -0.6 404,232 - Rru_A0332 0.11 +1.8 404,233 + Rru_A0332 0.11 +0.4 404,387 + Rru_A0332 0.33 +2.4 404,388 - Rru_A0332 0.34 -0.8 404,516 + Rru_A0332 0.52 +0.1 404,537 + Rru_A0332 0.55 +0.3 404,552 + Rru_A0332 0.57 +0.3 404,612 + Rru_A0332 0.66 -0.2 404,628 - Rru_A0332 0.68 -0.5 404,797 + -0.4 404,797 + -0.4 405,019 - -0.4 405,019 - +0.7
Or see this region's nucleotide sequence