Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0192 and Rru_A0193 are separated by 658 nucleotides Rru_A0193 and Rru_A0194 are separated by 220 nucleotides Rru_A0194 and Rru_A0195 are separated by 226 nucleotides
Rru_A0192: Rru_A0192 - Multi antimicrobial extrusion protein MatE (NCBI), at 233,826 to 235,253
_A0192
Rru_A0193: Rru_A0193 - Beta-ketoacyl synthase (NCBI), at 235,912 to 237,135
_A0193
Rru_A0194: Rru_A0194 - hypothetical protein (NCBI), at 237,356 to 237,643
_A0194
Rru_A0195: Rru_A0195 - hypothetical protein (NCBI), at 237,870 to 243,644
_A0195
Position (kb) 235
236
237
238 Strain fitness (log2 ratio) -2
-1
0
1 at 235.068 kb on + strand, within Rru_A0192 at 235.069 kb on - strand, within Rru_A0192 at 235.125 kb on + strand at 235.190 kb on - strand at 235.190 kb on - strand at 235.190 kb on - strand at 235.190 kb on - strand at 235.190 kb on - strand at 235.252 kb on - strand at 235.525 kb on + strand at 235.525 kb on + strand at 235.525 kb on + strand at 235.821 kb on + strand at 235.822 kb on - strand at 235.837 kb on + strand at 235.838 kb on - strand at 235.838 kb on - strand at 235.838 kb on - strand at 235.838 kb on - strand at 235.963 kb on - strand at 236.396 kb on + strand, within Rru_A0193 at 236.546 kb on + strand, within Rru_A0193 at 236.774 kb on + strand, within Rru_A0193 at 236.775 kb on - strand, within Rru_A0193 at 236.775 kb on - strand, within Rru_A0193 at 236.775 kb on - strand, within Rru_A0193 at 237.154 kb on - strand at 237.157 kb on + strand at 237.158 kb on - strand at 237.159 kb on + strand at 237.159 kb on + strand at 237.211 kb on + strand at 237.226 kb on + strand at 237.641 kb on + strand at 237.668 kb on - strand at 237.693 kb on + strand at 237.802 kb on + strand at 237.802 kb on + strand at 237.802 kb on + strand at 237.802 kb on + strand at 237.803 kb on - strand at 237.803 kb on - strand at 237.803 kb on - strand at 237.803 kb on - strand at 237.803 kb on - strand at 237.879 kb on + strand at 237.879 kb on + strand at 237.879 kb on + strand at 237.879 kb on + strand at 237.880 kb on - strand at 237.880 kb on - strand at 237.880 kb on - strand at 237.958 kb on - strand at 237.958 kb on - strand at 237.963 kb on + strand at 237.963 kb on + strand at 237.964 kb on - strand at 237.964 kb on - strand at 238.029 kb on + strand at 238.098 kb on + strand at 238.099 kb on - strand at 238.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 235,068 + Rru_A0192 0.87 +0.6 235,069 - Rru_A0192 0.87 -0.1 235,125 + +0.4 235,190 - +0.1 235,190 - +0.1 235,190 - -0.1 235,190 - +0.2 235,190 - -0.0 235,252 - +0.1 235,525 + -0.1 235,525 + -0.2 235,525 + -0.0 235,821 + -1.4 235,822 - +0.3 235,837 + -0.6 235,838 - +0.2 235,838 - +0.0 235,838 - -0.3 235,838 - +0.2 235,963 - -0.6 236,396 + Rru_A0193 0.40 -0.1 236,546 + Rru_A0193 0.52 -0.7 236,774 + Rru_A0193 0.70 +0.1 236,775 - Rru_A0193 0.71 -0.1 236,775 - Rru_A0193 0.71 -0.9 236,775 - Rru_A0193 0.71 -0.4 237,154 - -0.1 237,157 + +0.2 237,158 - -0.5 237,159 + +0.0 237,159 + +0.7 237,211 + -0.1 237,226 + -0.1 237,641 + -1.6 237,668 - -1.9 237,693 + -0.0 237,802 + +0.7 237,802 + -0.5 237,802 + -1.3 237,802 + +0.0 237,803 - -0.5 237,803 - +0.9 237,803 - -0.7 237,803 - -0.5 237,803 - +0.1 237,879 + +0.5 237,879 + -0.3 237,879 + +0.1 237,879 + -0.0 237,880 - +0.2 237,880 - +0.7 237,880 - +0.1 237,958 - +1.5 237,958 - -0.5 237,963 + -0.8 237,963 + +0.1 237,964 - -0.9 237,964 - -0.4 238,029 + -0.1 238,098 + -1.2 238,099 - +0.0 238,099 - -0.1
Or see this region's nucleotide sequence