Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.953.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.952.1 and Xcc-8004.953.1 are separated by 332 nucleotidesXcc-8004.953.1 and Xcc-8004.954.1 are separated by 45 nucleotides Xcc-8004.952.1: Xcc-8004.952.1 - General secretion pathway protein N, at 895,279 to 895,995 Xcc-8004.952.1 Xcc-8004.953.1: Xcc-8004.953.1 - Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family, at 896,328 to 897,083 Xcc-8004.953.1 Xcc-8004.954.1: Xcc-8004.954.1 - N-acetyl glucosamine transporter, NagP, at 897,129 to 898,406 Xcc-8004.954.1 Position (kb) 896 897 898Strain fitness (log2 ratio) -2 -1 0 1 2at 896.012 kb on + strandat 896.032 kb on - strandat 896.130 kb on + strandat 896.147 kb on + strandat 896.191 kb on - strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.194 kb on + strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.195 kb on - strandat 896.287 kb on - strandat 896.289 kb on + strandat 896.290 kb on - strandat 896.292 kb on - strandat 896.300 kb on + strandat 896.404 kb on - strand, within Xcc-8004.953.1at 896.796 kb on + strand, within Xcc-8004.953.1at 896.796 kb on + strand, within Xcc-8004.953.1at 896.797 kb on - strand, within Xcc-8004.953.1at 896.859 kb on + strand, within Xcc-8004.953.1at 896.907 kb on + strand, within Xcc-8004.953.1at 897.036 kb on + strandat 897.055 kb on - strandat 897.114 kb on - strandat 897.294 kb on + strand, within Xcc-8004.954.1at 897.295 kb on - strand, within Xcc-8004.954.1at 897.303 kb on + strand, within Xcc-8004.954.1at 897.304 kb on - strand, within Xcc-8004.954.1at 897.311 kb on - strand, within Xcc-8004.954.1at 897.504 kb on + strand, within Xcc-8004.954.1at 897.504 kb on + strand, within Xcc-8004.954.1at 897.505 kb on - strand, within Xcc-8004.954.1at 897.505 kb on - strand, within Xcc-8004.954.1at 897.567 kb on - strand, within Xcc-8004.954.1at 897.714 kb on + strand, within Xcc-8004.954.1at 897.714 kb on + strand, within Xcc-8004.954.1at 897.715 kb on - strand, within Xcc-8004.954.1at 897.715 kb on - strand, within Xcc-8004.954.1at 897.889 kb on - strand, within Xcc-8004.954.1at 897.889 kb on - strand, within Xcc-8004.954.1at 897.930 kb on + strand, within Xcc-8004.954.1at 897.982 kb on - strand, within Xcc-8004.954.1at 898.009 kb on - strand, within Xcc-8004.954.1at 898.009 kb on - strand, within Xcc-8004.954.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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896,012 + +1.7
896,032 - -0.3
896,130 + +1.7
896,147 + +0.7
896,191 - -0.5
896,194 + +1.3
896,194 + +1.1
896,194 + -1.7
896,194 + -2.1
896,194 + -1.8
896,194 + -0.4
896,194 + -0.5
896,194 + +1.2
896,194 + -1.1
896,194 + -0.3
896,194 + -2.6
896,194 + +0.3
896,194 + -2.1
896,195 - -1.5
896,195 - +0.3
896,195 - +1.4
896,195 - +0.2
896,195 - -1.5
896,195 - -0.9
896,195 - +1.8
896,195 - -1.4
896,195 - -1.2
896,195 - -1.0
896,195 - -2.1
896,287 - +0.0
896,289 + -0.9
896,290 - -1.4
896,292 - -1.0
896,300 + -1.3
896,404 - Xcc-8004.953.1 0.10 -0.5
896,796 + Xcc-8004.953.1 0.62 -1.4
896,796 + Xcc-8004.953.1 0.62 -1.5
896,797 - Xcc-8004.953.1 0.62 -2.6
896,859 + Xcc-8004.953.1 0.70 -0.9
896,907 + Xcc-8004.953.1 0.77 -0.2
897,036 + +0.7
897,055 - -0.1
897,114 - +1.0
897,294 + Xcc-8004.954.1 0.13 -0.5
897,295 - Xcc-8004.954.1 0.13 -0.5
897,303 + Xcc-8004.954.1 0.14 -0.1
897,304 - Xcc-8004.954.1 0.14 -1.8
897,311 - Xcc-8004.954.1 0.14 -1.0
897,504 + Xcc-8004.954.1 0.29 +0.3
897,504 + Xcc-8004.954.1 0.29 -0.1
897,505 - Xcc-8004.954.1 0.29 -1.5
897,505 - Xcc-8004.954.1 0.29 -1.9
897,567 - Xcc-8004.954.1 0.34 -0.7
897,714 + Xcc-8004.954.1 0.46 +0.3
897,714 + Xcc-8004.954.1 0.46 -0.8
897,715 - Xcc-8004.954.1 0.46 +0.4
897,715 - Xcc-8004.954.1 0.46 +1.1
897,889 - Xcc-8004.954.1 0.59 -1.1
897,889 - Xcc-8004.954.1 0.59 -0.2
897,930 + Xcc-8004.954.1 0.63 +0.5
897,982 - Xcc-8004.954.1 0.67 -2.1
898,009 - Xcc-8004.954.1 0.69 -1.2
898,009 - Xcc-8004.954.1 0.69 +0.2

Or see this region's nucleotide sequence