Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.877.1 and Xcc-8004.878.1 are separated by 610 nucleotides Xcc-8004.878.1 and Xcc-8004.880.1 are separated by 276 nucleotides
Xcc-8004.877.1: Xcc-8004.877.1 - hypothetical protein, at 826,159 to 828,201
Xcc-8004.877.1
Xcc-8004.878.1: Xcc-8004.878.1 - Sugar kinase, at 828,812 to 829,744
Xcc-8004.878.1
Xcc-8004.880.1: Xcc-8004.880.1 - Rod shape-determining protein MreB, at 830,021 to 831,067
Xcc-8004.880.1
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 827.843 kb on + strand, within Xcc-8004.877.1 at 827.868 kb on - strand, within Xcc-8004.877.1 at 827.868 kb on - strand, within Xcc-8004.877.1 at 827.868 kb on - strand, within Xcc-8004.877.1 at 827.868 kb on - strand, within Xcc-8004.877.1 at 827.987 kb on + strand, within Xcc-8004.877.1 at 827.987 kb on + strand, within Xcc-8004.877.1 at 827.987 kb on + strand, within Xcc-8004.877.1 at 827.987 kb on + strand, within Xcc-8004.877.1 at 827.987 kb on + strand, within Xcc-8004.877.1 at 827.987 kb on + strand, within Xcc-8004.877.1 at 827.988 kb on - strand, within Xcc-8004.877.1 at 828.042 kb on + strand at 828.168 kb on - strand at 828.243 kb on + strand at 828.305 kb on + strand at 828.326 kb on + strand at 828.354 kb on - strand at 828.397 kb on + strand at 828.397 kb on + strand at 828.398 kb on - strand at 828.398 kb on - strand at 828.398 kb on - strand at 828.398 kb on - strand at 828.398 kb on - strand at 828.417 kb on + strand at 828.417 kb on + strand at 828.506 kb on - strand at 828.671 kb on - strand at 828.671 kb on - strand at 828.671 kb on - strand at 828.698 kb on + strand at 828.698 kb on + strand at 828.699 kb on - strand at 828.699 kb on - strand at 828.699 kb on - strand at 828.723 kb on + strand at 828.723 kb on + strand at 828.724 kb on - strand at 828.724 kb on - strand at 828.724 kb on - strand at 828.775 kb on + strand at 828.775 kb on + strand at 828.775 kb on + strand at 828.775 kb on + strand at 828.775 kb on + strand at 828.775 kb on + strand at 828.775 kb on + strand at 828.776 kb on - strand at 828.776 kb on - strand at 828.776 kb on - strand at 828.776 kb on - strand at 828.776 kb on - strand at 828.776 kb on - strand at 828.776 kb on - strand at 828.813 kb on + strand at 828.814 kb on - strand at 828.814 kb on - strand at 828.814 kb on - strand at 828.948 kb on + strand, within Xcc-8004.878.1 at 828.948 kb on + strand, within Xcc-8004.878.1 at 828.948 kb on + strand, within Xcc-8004.878.1 at 828.949 kb on - strand, within Xcc-8004.878.1 at 828.949 kb on - strand, within Xcc-8004.878.1 at 828.949 kb on - strand, within Xcc-8004.878.1 at 828.949 kb on - strand, within Xcc-8004.878.1 at 828.949 kb on - strand, within Xcc-8004.878.1 at 828.949 kb on - strand, within Xcc-8004.878.1 at 828.967 kb on - strand, within Xcc-8004.878.1 at 828.967 kb on - strand, within Xcc-8004.878.1 at 829.044 kb on + strand, within Xcc-8004.878.1 at 829.044 kb on + strand, within Xcc-8004.878.1 at 829.045 kb on - strand, within Xcc-8004.878.1 at 829.045 kb on - strand, within Xcc-8004.878.1 at 829.099 kb on - strand, within Xcc-8004.878.1 at 829.099 kb on - strand, within Xcc-8004.878.1 at 829.099 kb on - strand, within Xcc-8004.878.1 at 829.185 kb on + strand, within Xcc-8004.878.1 at 829.186 kb on - strand, within Xcc-8004.878.1 at 829.186 kb on - strand, within Xcc-8004.878.1 at 829.186 kb on - strand, within Xcc-8004.878.1 at 829.186 kb on - strand, within Xcc-8004.878.1 at 829.372 kb on - strand, within Xcc-8004.878.1 at 829.582 kb on - strand, within Xcc-8004.878.1 at 829.582 kb on - strand, within Xcc-8004.878.1 at 829.582 kb on - strand, within Xcc-8004.878.1 at 829.582 kb on - strand, within Xcc-8004.878.1 at 829.582 kb on - strand, within Xcc-8004.878.1 at 829.714 kb on - strand at 829.714 kb on - strand at 829.771 kb on - strand at 829.892 kb on - strand at 829.939 kb on + strand at 829.944 kb on + strand at 829.944 kb on + strand at 829.944 kb on + strand at 829.944 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 827,843 + Xcc-8004.877.1 0.82 -1.3 827,868 - Xcc-8004.877.1 0.84 -0.3 827,868 - Xcc-8004.877.1 0.84 +3.6 827,868 - Xcc-8004.877.1 0.84 +1.2 827,868 - Xcc-8004.877.1 0.84 +0.5 827,987 + Xcc-8004.877.1 0.89 +2.2 827,987 + Xcc-8004.877.1 0.89 -1.1 827,987 + Xcc-8004.877.1 0.89 +1.2 827,987 + Xcc-8004.877.1 0.89 +0.9 827,987 + Xcc-8004.877.1 0.89 +1.0 827,987 + Xcc-8004.877.1 0.89 -0.1 827,988 - Xcc-8004.877.1 0.90 +0.5 828,042 + +1.7 828,168 - +1.7 828,243 + -0.7 828,305 + -0.4 828,326 + +0.3 828,354 - -3.1 828,397 + +0.9 828,397 + -1.4 828,398 - -0.2 828,398 - -1.5 828,398 - -0.2 828,398 - +0.1 828,398 - -0.6 828,417 + -1.3 828,417 + -0.4 828,506 - -0.1 828,671 - +0.7 828,671 - +0.6 828,671 - +0.6 828,698 + -2.3 828,698 + -1.3 828,699 - -1.0 828,699 - -2.1 828,699 - +0.0 828,723 + -0.7 828,723 + -0.3 828,724 - +1.4 828,724 - +2.3 828,724 - -1.3 828,775 + +0.2 828,775 + -2.1 828,775 + +2.5 828,775 + +1.3 828,775 + +0.6 828,775 + -0.5 828,775 + +0.2 828,776 - -1.5 828,776 - -0.9 828,776 - -3.0 828,776 - -1.8 828,776 - +0.3 828,776 - +1.1 828,776 - -0.3 828,813 + -1.0 828,814 - -1.5 828,814 - -0.5 828,814 - +0.4 828,948 + Xcc-8004.878.1 0.15 +2.3 828,948 + Xcc-8004.878.1 0.15 +0.3 828,948 + Xcc-8004.878.1 0.15 +1.6 828,949 - Xcc-8004.878.1 0.15 +0.7 828,949 - Xcc-8004.878.1 0.15 +1.0 828,949 - Xcc-8004.878.1 0.15 -0.5 828,949 - Xcc-8004.878.1 0.15 -1.5 828,949 - Xcc-8004.878.1 0.15 +0.2 828,949 - Xcc-8004.878.1 0.15 -0.3 828,967 - Xcc-8004.878.1 0.17 -2.2 828,967 - Xcc-8004.878.1 0.17 -0.7 829,044 + Xcc-8004.878.1 0.25 +0.2 829,044 + Xcc-8004.878.1 0.25 -0.2 829,045 - Xcc-8004.878.1 0.25 +1.3 829,045 - Xcc-8004.878.1 0.25 -2.4 829,099 - Xcc-8004.878.1 0.31 -2.8 829,099 - Xcc-8004.878.1 0.31 +1.6 829,099 - Xcc-8004.878.1 0.31 -1.4 829,185 + Xcc-8004.878.1 0.40 +1.0 829,186 - Xcc-8004.878.1 0.40 -0.6 829,186 - Xcc-8004.878.1 0.40 +0.9 829,186 - Xcc-8004.878.1 0.40 -2.8 829,186 - Xcc-8004.878.1 0.40 -2.1 829,372 - Xcc-8004.878.1 0.60 +1.3 829,582 - Xcc-8004.878.1 0.83 -0.9 829,582 - Xcc-8004.878.1 0.83 -1.7 829,582 - Xcc-8004.878.1 0.83 -1.1 829,582 - Xcc-8004.878.1 0.83 -0.0 829,582 - Xcc-8004.878.1 0.83 -1.8 829,714 - -0.6 829,714 - -2.4 829,771 - -0.6 829,892 - -1.5 829,939 + -1.9 829,944 + -0.2 829,944 + -1.3 829,944 + -1.6 829,944 + -1.9
Or see this region's nucleotide sequence