Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.681.1 and Xcc-8004.682.1 are separated by 829 nucleotides Xcc-8004.682.1 and Xcc-8004.683.1 are separated by 5 nucleotides Xcc-8004.683.1 and Xcc-8004.684.1 are separated by 600 nucleotides
Xcc-8004.681.1: Xcc-8004.681.1 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 625,615 to 626,061
Xcc-8004.681.1
Xcc-8004.682.1: Xcc-8004.682.1 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 626,891 to 629,197
Xcc-8004.682.1
Xcc-8004.683.1: Xcc-8004.683.1 - hypothetical protein, at 629,203 to 629,535
Xcc-8004.683.1
Xcc-8004.684.1: Xcc-8004.684.1 - Extracellular ribonuclease precursor (EC 3.1.-.-), at 630,136 to 631,926
Xcc-8004.684.1
Position (kb) 626
627
628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 626.298 kb on + strand at 626.298 kb on + strand at 626.298 kb on + strand at 626.299 kb on - strand at 626.299 kb on - strand at 626.299 kb on - strand at 626.299 kb on - strand at 626.373 kb on + strand at 626.423 kb on + strand at 626.582 kb on + strand at 626.582 kb on + strand at 626.583 kb on - strand at 626.583 kb on - strand at 626.583 kb on - strand at 626.583 kb on - strand at 626.769 kb on - strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.875 kb on - strand at 626.875 kb on - strand at 626.875 kb on - strand at 626.875 kb on - strand at 626.875 kb on - strand at 628.411 kb on - strand, within Xcc-8004.682.1 at 628.411 kb on - strand, within Xcc-8004.682.1 at 629.159 kb on + strand at 629.160 kb on - strand at 629.244 kb on - strand, within Xcc-8004.683.1 at 629.294 kb on + strand, within Xcc-8004.683.1 at 629.294 kb on + strand, within Xcc-8004.683.1 at 629.295 kb on - strand, within Xcc-8004.683.1 at 629.402 kb on + strand, within Xcc-8004.683.1 at 629.403 kb on - strand, within Xcc-8004.683.1 at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.659 kb on + strand at 629.660 kb on - strand at 629.660 kb on - strand at 629.660 kb on - strand at 629.660 kb on - strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.808 kb on - strand at 629.808 kb on - strand at 629.808 kb on - strand at 629.808 kb on - strand at 629.808 kb on - strand at 630.006 kb on + strand at 630.006 kb on + strand at 630.007 kb on - strand at 630.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 626,298 + -1.9 626,298 + +0.9 626,298 + -0.4 626,299 - -2.0 626,299 - +0.3 626,299 - +0.0 626,299 - +0.7 626,373 + -0.3 626,423 + -0.7 626,582 + +1.1 626,582 + +0.4 626,583 - -0.6 626,583 - -2.0 626,583 - -1.2 626,583 - +0.7 626,769 - +0.2 626,810 + +0.6 626,810 + -1.0 626,810 + +0.2 626,810 + -0.8 626,810 + +0.6 626,810 + -0.9 626,810 + +0.4 626,810 + +0.3 626,811 - +0.2 626,811 - -0.1 626,811 - -3.2 626,811 - -0.0 626,811 - +0.3 626,811 - +0.9 626,811 - +1.9 626,875 - -1.3 626,875 - -1.6 626,875 - +1.1 626,875 - +0.8 626,875 - +0.0 628,411 - Xcc-8004.682.1 0.66 +0.2 628,411 - Xcc-8004.682.1 0.66 -2.3 629,159 + +0.2 629,160 - -0.2 629,244 - Xcc-8004.683.1 0.12 -1.0 629,294 + Xcc-8004.683.1 0.27 -2.2 629,294 + Xcc-8004.683.1 0.27 +2.3 629,295 - Xcc-8004.683.1 0.28 +1.0 629,402 + Xcc-8004.683.1 0.60 +0.8 629,403 - Xcc-8004.683.1 0.60 +0.9 629,550 + +0.2 629,550 + +0.4 629,550 + +3.1 629,550 + -1.4 629,550 + +0.3 629,550 + -2.1 629,550 + -0.4 629,550 + -0.3 629,551 - +2.6 629,551 - +3.7 629,551 - +0.5 629,551 - -0.5 629,551 - +0.9 629,551 - -1.1 629,551 - +1.8 629,659 + -0.1 629,660 - -1.7 629,660 - +0.6 629,660 - -0.4 629,660 - -0.1 629,807 + -2.9 629,807 + +0.7 629,807 + +0.7 629,807 + -0.0 629,807 + +0.9 629,807 + -1.5 629,807 + +0.6 629,807 + -0.8 629,807 + +0.5 629,807 + +1.1 629,807 + -0.4 629,807 + +0.7 629,808 - +0.6 629,808 - +0.8 629,808 - +0.4 629,808 - +0.0 629,808 - +0.4 630,006 + -1.5 630,006 + +1.1 630,007 - -0.4 630,007 - -0.7
Or see this region's nucleotide sequence