Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.625.1 and Xcc-8004.627.1 are separated by 162 nucleotides Xcc-8004.627.1 and Xcc-8004.628.1 overlap by 142 nucleotides Xcc-8004.628.1 and Xcc-8004.629.1 are separated by 170 nucleotides Xcc-8004.629.1 and Xcc-8004.630.1 are separated by 183 nucleotides Xcc-8004.630.1 and Xcc-8004.632.1 are separated by 2 nucleotides
Xcc-8004.625.1: Xcc-8004.625.1 - S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A, at 576,543 to 577,337
Xcc-8004.625.1
Xcc-8004.627.1: Xcc-8004.627.1 - Quaternary ammonium compound-resistance protein SugE, at 577,500 to 577,814
Xcc-8004.627.1
Xcc-8004.628.1: Xcc-8004.628.1 - hypothetical protein, at 577,673 to 577,957
Xcc-8004.628.1
Xcc-8004.629.1: Xcc-8004.629.1 - hypothetical protein, at 578,128 to 578,781
Xcc-8004.629.1
Xcc-8004.630.1: Xcc-8004.630.1 - LSU ribosomal protein L13p (L13Ae), at 578,965 to 579,393
Xcc-8004.630.1
Xcc-8004.632.1: Xcc-8004.632.1 - SSU ribosomal protein S9p (S16e), at 579,396 to 579,788
Xcc-8004.632.1
Position (kb) 578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 577.335 kb on + strand at 577.335 kb on + strand at 577.341 kb on + strand at 577.341 kb on + strand at 577.341 kb on + strand at 577.341 kb on + strand at 577.342 kb on - strand at 577.342 kb on - strand at 577.358 kb on + strand at 577.358 kb on + strand at 577.358 kb on + strand at 577.358 kb on + strand at 577.359 kb on - strand at 577.359 kb on - strand at 577.428 kb on - strand at 577.512 kb on + strand at 577.512 kb on + strand at 577.512 kb on + strand at 577.512 kb on + strand at 577.512 kb on + strand at 577.512 kb on + strand at 577.513 kb on - strand at 577.513 kb on - strand at 577.513 kb on - strand at 577.513 kb on - strand at 577.513 kb on - strand at 577.564 kb on - strand, within Xcc-8004.627.1 at 577.674 kb on + strand at 577.675 kb on - strand at 577.812 kb on + strand at 577.812 kb on + strand at 577.812 kb on + strand at 577.812 kb on + strand at 577.812 kb on + strand at 577.812 kb on + strand at 577.813 kb on - strand at 577.813 kb on - strand at 577.813 kb on - strand at 577.813 kb on - strand at 577.813 kb on - strand at 577.813 kb on - strand at 577.813 kb on - strand at 577.813 kb on - strand at 577.813 kb on - strand at 577.818 kb on + strand, within Xcc-8004.628.1 at 577.818 kb on + strand, within Xcc-8004.628.1 at 577.818 kb on + strand, within Xcc-8004.628.1 at 577.818 kb on + strand, within Xcc-8004.628.1 at 577.818 kb on + strand, within Xcc-8004.628.1 at 577.818 kb on + strand, within Xcc-8004.628.1 at 577.818 kb on + strand, within Xcc-8004.628.1 at 577.819 kb on - strand, within Xcc-8004.628.1 at 577.819 kb on - strand, within Xcc-8004.628.1 at 577.889 kb on + strand, within Xcc-8004.628.1 at 577.890 kb on - strand, within Xcc-8004.628.1 at 578.002 kb on + strand at 578.002 kb on + strand at 578.002 kb on + strand at 578.003 kb on - strand at 578.129 kb on + strand at 578.129 kb on + strand at 578.129 kb on + strand at 578.130 kb on - strand at 578.130 kb on - strand at 578.130 kb on - strand at 578.350 kb on + strand, within Xcc-8004.629.1 at 578.350 kb on + strand, within Xcc-8004.629.1 at 578.405 kb on + strand, within Xcc-8004.629.1 at 578.405 kb on + strand, within Xcc-8004.629.1 at 578.406 kb on - strand, within Xcc-8004.629.1 at 578.406 kb on - strand, within Xcc-8004.629.1 at 578.406 kb on - strand, within Xcc-8004.629.1 at 578.564 kb on + strand, within Xcc-8004.629.1 at 578.565 kb on - strand, within Xcc-8004.629.1 at 578.565 kb on - strand, within Xcc-8004.629.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 577,335 + -2.9 577,335 + +0.0 577,341 + -1.9 577,341 + +0.5 577,341 + -0.3 577,341 + -0.1 577,342 - -0.7 577,342 - +0.4 577,358 + +0.8 577,358 + -0.8 577,358 + -0.7 577,358 + -0.5 577,359 - +0.3 577,359 - +0.5 577,428 - -1.4 577,512 + +0.1 577,512 + -1.2 577,512 + -0.0 577,512 + -0.7 577,512 + +2.0 577,512 + +0.6 577,513 - -0.0 577,513 - -0.2 577,513 - +0.8 577,513 - +1.4 577,513 - -0.7 577,564 - Xcc-8004.627.1 0.20 +0.6 577,674 + +1.4 577,675 - -2.5 577,812 + -0.5 577,812 + +0.8 577,812 + -1.3 577,812 + +0.8 577,812 + -0.1 577,812 + +0.4 577,813 - -0.2 577,813 - +0.6 577,813 - -1.0 577,813 - -2.0 577,813 - -1.1 577,813 - +0.4 577,813 - -0.5 577,813 - +0.4 577,813 - -0.8 577,818 + Xcc-8004.628.1 0.51 +0.5 577,818 + Xcc-8004.628.1 0.51 +1.2 577,818 + Xcc-8004.628.1 0.51 +4.1 577,818 + Xcc-8004.628.1 0.51 +0.3 577,818 + Xcc-8004.628.1 0.51 -1.0 577,818 + Xcc-8004.628.1 0.51 -0.7 577,818 + Xcc-8004.628.1 0.51 +1.1 577,819 - Xcc-8004.628.1 0.51 +0.3 577,819 - Xcc-8004.628.1 0.51 +0.7 577,889 + Xcc-8004.628.1 0.76 -2.3 577,890 - Xcc-8004.628.1 0.76 -3.4 578,002 + -0.5 578,002 + -2.8 578,002 + +2.1 578,003 - +1.9 578,129 + +1.0 578,129 + +0.5 578,129 + +1.1 578,130 - +0.4 578,130 - +1.5 578,130 - -0.5 578,350 + Xcc-8004.629.1 0.34 +0.7 578,350 + Xcc-8004.629.1 0.34 +2.3 578,405 + Xcc-8004.629.1 0.42 -0.4 578,405 + Xcc-8004.629.1 0.42 -1.3 578,406 - Xcc-8004.629.1 0.43 -2.3 578,406 - Xcc-8004.629.1 0.43 +0.1 578,406 - Xcc-8004.629.1 0.43 -1.1 578,564 + Xcc-8004.629.1 0.67 -0.5 578,565 - Xcc-8004.629.1 0.67 -0.6 578,565 - Xcc-8004.629.1 0.67 -1.1
Or see this region's nucleotide sequence