Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.565.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.563.1 and Xcc-8004.564.1 are separated by 167 nucleotidesXcc-8004.564.1 and Xcc-8004.566.1 overlap by 4 nucleotidesXcc-8004.566.1 and Xcc-8004.567.1 overlap by 134 nucleotidesXcc-8004.567.1 and Xcc-8004.568.1 overlap by 4 nucleotidesXcc-8004.568.1 and Xcc-8004.565.1 overlap by 76 nucleotidesXcc-8004.565.1 and Xcc-8004.569.1 overlap by 4 nucleotidesXcc-8004.569.1 and Xcc-8004.570.1 are separated by 1 nucleotides Xcc-8004.563.1: Xcc-8004.563.1 - hypothetical protein, at 522,275 to 522,673 Xcc-8004.563.1 Xcc-8004.564.1: Xcc-8004.564.1 - Mobile element protein, at 522,841 to 523,053 Xcc-8004.564.1 Xcc-8004.566.1: Xcc-8004.566.1 - Mobile element protein, at 523,050 to 523,313 Xcc-8004.566.1 Xcc-8004.567.1: Xcc-8004.567.1 - hypothetical protein, at 523,180 to 523,356 Xcc-8004.567.1 Xcc-8004.568.1: Xcc-8004.568.1 - hypothetical protein, at 523,353 to 523,550 Xcc-8004.568.1 Xcc-8004.565.1: Xcc-8004.565.1 - Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168), at 523,475 to 524,983 Xcc-8004.565.1 Xcc-8004.569.1: Xcc-8004.569.1 - FIG01209918: hypothetical protein, at 524,980 to 525,363 Xcc-8004.569.1 Xcc-8004.570.1: Xcc-8004.570.1 - Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4), at 525,365 to 526,435 Xcc-8004.570.1 Position (kb) 523 524 525Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 522.512 kb on - strand, within Xcc-8004.563.1at 522.538 kb on + strand, within Xcc-8004.563.1at 522.538 kb on + strand, within Xcc-8004.563.1at 522.538 kb on + strand, within Xcc-8004.563.1at 522.538 kb on + strand, within Xcc-8004.563.1at 522.539 kb on - strand, within Xcc-8004.563.1at 522.539 kb on - strand, within Xcc-8004.563.1at 522.539 kb on - strand, within Xcc-8004.563.1at 522.539 kb on - strand, within Xcc-8004.563.1at 522.539 kb on - strand, within Xcc-8004.563.1at 522.543 kb on - strand, within Xcc-8004.563.1at 522.543 kb on - strand, within Xcc-8004.563.1at 522.543 kb on - strand, within Xcc-8004.563.1at 522.543 kb on - strand, within Xcc-8004.563.1at 522.543 kb on - strand, within Xcc-8004.563.1at 522.560 kb on + strand, within Xcc-8004.563.1at 522.561 kb on - strand, within Xcc-8004.563.1at 522.561 kb on - strand, within Xcc-8004.563.1at 522.561 kb on - strand, within Xcc-8004.563.1at 522.565 kb on + strand, within Xcc-8004.563.1at 522.565 kb on + strand, within Xcc-8004.563.1at 522.566 kb on - strand, within Xcc-8004.563.1at 522.566 kb on - strand, within Xcc-8004.563.1at 522.566 kb on - strand, within Xcc-8004.563.1at 522.566 kb on - strand, within Xcc-8004.563.1at 522.569 kb on + strand, within Xcc-8004.563.1at 522.605 kb on - strand, within Xcc-8004.563.1at 522.605 kb on - strand, within Xcc-8004.563.1at 522.605 kb on - strand, within Xcc-8004.563.1at 522.608 kb on - strand, within Xcc-8004.563.1at 522.624 kb on + strand, within Xcc-8004.563.1at 522.626 kb on + strand, within Xcc-8004.563.1at 522.627 kb on - strand, within Xcc-8004.563.1at 522.627 kb on - strand, within Xcc-8004.563.1at 522.635 kb on + strandat 522.635 kb on + strandat 522.646 kb on - strandat 522.740 kb on + strandat 522.740 kb on + strandat 522.760 kb on + strandat 522.760 kb on + strandat 522.760 kb on + strandat 522.761 kb on - strandat 522.762 kb on + strandat 522.762 kb on + strandat 522.763 kb on - strandat 522.804 kb on + strandat 522.804 kb on + strandat 522.805 kb on - strandat 522.967 kb on + strand, within Xcc-8004.564.1at 523.001 kb on - strand, within Xcc-8004.564.1at 523.017 kb on - strand, within Xcc-8004.564.1at 523.017 kb on - strand, within Xcc-8004.564.1at 523.044 kb on + strandat 523.232 kb on + strandat 523.232 kb on + strandat 523.233 kb on - strandat 523.233 kb on - strandat 523.344 kb on + strandat 523.344 kb on + strandat 523.344 kb on + strandat 523.345 kb on - strandat 523.453 kb on + strand, within Xcc-8004.568.1at 523.453 kb on + strand, within Xcc-8004.568.1at 523.453 kb on + strand, within Xcc-8004.568.1at 523.453 kb on + strand, within Xcc-8004.568.1at 523.453 kb on + strand, within Xcc-8004.568.1at 523.453 kb on + strand, within Xcc-8004.568.1at 523.453 kb on + strand, within Xcc-8004.568.1at 523.453 kb on + strand, within Xcc-8004.568.1at 523.453 kb on + strand, within Xcc-8004.568.1at 523.453 kb on + strand, within Xcc-8004.568.1at 523.454 kb on - strand, within Xcc-8004.568.1at 523.454 kb on - strand, within Xcc-8004.568.1at 523.454 kb on - strand, within Xcc-8004.568.1at 523.454 kb on - strand, within Xcc-8004.568.1at 523.454 kb on - strand, within Xcc-8004.568.1at 523.454 kb on - strand, within Xcc-8004.568.1at 523.454 kb on - strand, within Xcc-8004.568.1at 523.454 kb on - strand, within Xcc-8004.568.1at 523.454 kb on - strand, within Xcc-8004.568.1at 523.678 kb on - strand, within Xcc-8004.565.1at 523.719 kb on + strand, within Xcc-8004.565.1at 523.720 kb on - strand, within Xcc-8004.565.1at 523.836 kb on - strand, within Xcc-8004.565.1at 523.836 kb on - strand, within Xcc-8004.565.1at 523.857 kb on - strand, within Xcc-8004.565.1at 524.356 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.495 kb on - strand, within Xcc-8004.565.1at 524.867 kb on + strandat 524.867 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 525.107 kb on + strand, within Xcc-8004.569.1at 525.108 kb on - strand, within Xcc-8004.569.1at 525.108 kb on - strand, within Xcc-8004.569.1at 525.108 kb on - strand, within Xcc-8004.569.1at 525.158 kb on + strand, within Xcc-8004.569.1at 525.158 kb on + strand, within Xcc-8004.569.1at 525.159 kb on - strand, within Xcc-8004.569.1at 525.159 kb on - strand, within Xcc-8004.569.1at 525.327 kb on - strandat 525.327 kb on - strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.462 kb on + strandat 525.462 kb on + strandat 525.462 kb on + strandat 525.463 kb on - strandat 525.498 kb on + strand, within Xcc-8004.570.1at 525.498 kb on + strand, within Xcc-8004.570.1at 525.498 kb on + strand, within Xcc-8004.570.1at 525.498 kb on + strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.817 kb on - strand, within Xcc-8004.570.1at 525.817 kb on - strand, within Xcc-8004.570.1at 525.817 kb on - strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.882 kb on + strand, within Xcc-8004.570.1at 525.882 kb on + strand, within Xcc-8004.570.1at 525.882 kb on + strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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522,512 - Xcc-8004.563.1 0.59 -1.0
522,538 + Xcc-8004.563.1 0.66 +0.1
522,538 + Xcc-8004.563.1 0.66 +0.8
522,538 + Xcc-8004.563.1 0.66 +0.2
522,538 + Xcc-8004.563.1 0.66 +0.2
522,539 - Xcc-8004.563.1 0.66 -0.6
522,539 - Xcc-8004.563.1 0.66 -0.4
522,539 - Xcc-8004.563.1 0.66 +0.6
522,539 - Xcc-8004.563.1 0.66 -2.2
522,539 - Xcc-8004.563.1 0.66 -0.5
522,543 - Xcc-8004.563.1 0.67 +0.9
522,543 - Xcc-8004.563.1 0.67 +0.5
522,543 - Xcc-8004.563.1 0.67 +1.2
522,543 - Xcc-8004.563.1 0.67 +0.6
522,543 - Xcc-8004.563.1 0.67 +0.3
522,560 + Xcc-8004.563.1 0.71 -0.3
522,561 - Xcc-8004.563.1 0.72 +0.9
522,561 - Xcc-8004.563.1 0.72 +1.2
522,561 - Xcc-8004.563.1 0.72 -0.2
522,565 + Xcc-8004.563.1 0.73 -0.5
522,565 + Xcc-8004.563.1 0.73 -0.8
522,566 - Xcc-8004.563.1 0.73 -0.0
522,566 - Xcc-8004.563.1 0.73 -1.9
522,566 - Xcc-8004.563.1 0.73 +0.4
522,566 - Xcc-8004.563.1 0.73 +1.0
522,569 + Xcc-8004.563.1 0.74 -1.1
522,605 - Xcc-8004.563.1 0.83 -0.6
522,605 - Xcc-8004.563.1 0.83 +1.3
522,605 - Xcc-8004.563.1 0.83 +1.0
522,608 - Xcc-8004.563.1 0.83 -1.1
522,624 + Xcc-8004.563.1 0.87 +2.0
522,626 + Xcc-8004.563.1 0.88 +0.2
522,627 - Xcc-8004.563.1 0.88 -0.5
522,627 - Xcc-8004.563.1 0.88 +0.8
522,635 + +0.8
522,635 + -0.5
522,646 - +0.3
522,740 + -2.8
522,740 + -0.2
522,760 + +0.1
522,760 + -1.1
522,760 + -0.7
522,761 - -1.1
522,762 + -1.6
522,762 + -0.1
522,763 - +0.4
522,804 + +0.1
522,804 + +1.1
522,805 - +2.1
522,967 + Xcc-8004.564.1 0.59 -3.3
523,001 - Xcc-8004.564.1 0.75 +0.6
523,017 - Xcc-8004.564.1 0.83 -0.8
523,017 - Xcc-8004.564.1 0.83 -1.2
523,044 + +0.0
523,232 + -1.4
523,232 + +1.7
523,233 - -2.3
523,233 - +0.3
523,344 + -1.1
523,344 + +2.5
523,344 + +0.1
523,345 - +0.6
523,453 + Xcc-8004.568.1 0.51 -0.1
523,453 + Xcc-8004.568.1 0.51 -1.1
523,453 + Xcc-8004.568.1 0.51 +2.0
523,453 + Xcc-8004.568.1 0.51 +0.5
523,453 + Xcc-8004.568.1 0.51 -0.1
523,453 + Xcc-8004.568.1 0.51 +0.6
523,453 + Xcc-8004.568.1 0.51 +2.3
523,453 + Xcc-8004.568.1 0.51 -0.5
523,453 + Xcc-8004.568.1 0.51 -2.2
523,453 + Xcc-8004.568.1 0.51 -0.2
523,454 - Xcc-8004.568.1 0.51 -1.0
523,454 - Xcc-8004.568.1 0.51 -0.1
523,454 - Xcc-8004.568.1 0.51 -1.1
523,454 - Xcc-8004.568.1 0.51 -0.7
523,454 - Xcc-8004.568.1 0.51 +0.2
523,454 - Xcc-8004.568.1 0.51 +1.1
523,454 - Xcc-8004.568.1 0.51 -0.1
523,454 - Xcc-8004.568.1 0.51 +0.0
523,454 - Xcc-8004.568.1 0.51 -1.4
523,678 - Xcc-8004.565.1 0.13 -1.0
523,719 + Xcc-8004.565.1 0.16 -0.7
523,720 - Xcc-8004.565.1 0.16 -1.6
523,836 - Xcc-8004.565.1 0.24 -0.4
523,836 - Xcc-8004.565.1 0.24 -1.5
523,857 - Xcc-8004.565.1 0.25 +0.0
524,356 + Xcc-8004.565.1 0.58 -0.7
524,378 + Xcc-8004.565.1 0.60 -1.3
524,378 + Xcc-8004.565.1 0.60 -0.5
524,378 + Xcc-8004.565.1 0.60 -0.1
524,378 + Xcc-8004.565.1 0.60 +0.5
524,379 - Xcc-8004.565.1 0.60 -0.5
524,379 - Xcc-8004.565.1 0.60 -1.0
524,379 - Xcc-8004.565.1 0.60 -2.8
524,379 - Xcc-8004.565.1 0.60 +0.8
524,379 - Xcc-8004.565.1 0.60 -0.7
524,379 - Xcc-8004.565.1 0.60 +0.7
524,379 - Xcc-8004.565.1 0.60 -0.8
524,495 - Xcc-8004.565.1 0.68 -1.8
524,867 + -1.4
524,867 + +1.6
524,870 + -1.0
524,870 + -0.3
524,870 + +0.7
524,870 + -1.2
524,870 + +1.8
525,107 + Xcc-8004.569.1 0.33 +0.2
525,108 - Xcc-8004.569.1 0.33 -0.9
525,108 - Xcc-8004.569.1 0.33 +0.2
525,108 - Xcc-8004.569.1 0.33 +0.1
525,158 + Xcc-8004.569.1 0.46 -0.6
525,158 + Xcc-8004.569.1 0.46 -0.6
525,159 - Xcc-8004.569.1 0.47 -1.6
525,159 - Xcc-8004.569.1 0.47 -1.1
525,327 - -0.4
525,327 - +1.2
525,451 + +0.8
525,451 + -1.8
525,451 + +0.7
525,451 + +0.9
525,451 + +0.4
525,462 + -3.0
525,462 + +0.4
525,462 + +1.2
525,463 - -2.2
525,498 + Xcc-8004.570.1 0.12 +0.3
525,498 + Xcc-8004.570.1 0.12 -0.1
525,498 + Xcc-8004.570.1 0.12 -2.1
525,498 + Xcc-8004.570.1 0.12 +0.1
525,499 - Xcc-8004.570.1 0.13 -1.6
525,499 - Xcc-8004.570.1 0.13 +0.3
525,499 - Xcc-8004.570.1 0.13 -0.7
525,499 - Xcc-8004.570.1 0.13 +1.0
525,499 - Xcc-8004.570.1 0.13 +1.5
525,499 - Xcc-8004.570.1 0.13 -1.3
525,807 + Xcc-8004.570.1 0.41 +0.7
525,807 + Xcc-8004.570.1 0.41 +0.7
525,807 + Xcc-8004.570.1 0.41 -1.0
525,807 + Xcc-8004.570.1 0.41 -0.3
525,807 + Xcc-8004.570.1 0.41 -0.1
525,808 - Xcc-8004.570.1 0.41 -1.6
525,808 - Xcc-8004.570.1 0.41 -1.0
525,808 - Xcc-8004.570.1 0.41 +0.9
525,808 - Xcc-8004.570.1 0.41 -2.2
525,808 - Xcc-8004.570.1 0.41 -0.2
525,808 - Xcc-8004.570.1 0.41 +0.4
525,816 + Xcc-8004.570.1 0.42 +0.1
525,816 + Xcc-8004.570.1 0.42 +1.7
525,816 + Xcc-8004.570.1 0.42 -0.6
525,816 + Xcc-8004.570.1 0.42 -0.0
525,816 + Xcc-8004.570.1 0.42 -0.7
525,816 + Xcc-8004.570.1 0.42 -0.8
525,816 + Xcc-8004.570.1 0.42 -1.8
525,816 + Xcc-8004.570.1 0.42 +2.2
525,816 + Xcc-8004.570.1 0.42 -0.6
525,816 + Xcc-8004.570.1 0.42 -0.6
525,817 - Xcc-8004.570.1 0.42 +3.7
525,817 - Xcc-8004.570.1 0.42 +0.2
525,817 - Xcc-8004.570.1 0.42 -1.5
525,837 + Xcc-8004.570.1 0.44 +0.9
525,837 + Xcc-8004.570.1 0.44 -0.3
525,837 + Xcc-8004.570.1 0.44 -1.1
525,837 + Xcc-8004.570.1 0.44 -2.3
525,837 + Xcc-8004.570.1 0.44 +0.0
525,837 + Xcc-8004.570.1 0.44 -0.9
525,837 + Xcc-8004.570.1 0.44 -1.4
525,837 + Xcc-8004.570.1 0.44 +1.4
525,837 + Xcc-8004.570.1 0.44 +0.6
525,837 + Xcc-8004.570.1 0.44 -1.9
525,838 - Xcc-8004.570.1 0.44 -0.2
525,838 - Xcc-8004.570.1 0.44 +2.1
525,838 - Xcc-8004.570.1 0.44 +0.2
525,838 - Xcc-8004.570.1 0.44 -0.3
525,838 - Xcc-8004.570.1 0.44 +1.0
525,838 - Xcc-8004.570.1 0.44 +0.6
525,838 - Xcc-8004.570.1 0.44 -0.6
525,838 - Xcc-8004.570.1 0.44 -0.2
525,838 - Xcc-8004.570.1 0.44 -1.2
525,838 - Xcc-8004.570.1 0.44 -0.6
525,838 - Xcc-8004.570.1 0.44 +2.0
525,838 - Xcc-8004.570.1 0.44 +0.4
525,838 - Xcc-8004.570.1 0.44 -0.4
525,838 - Xcc-8004.570.1 0.44 +2.0
525,882 + Xcc-8004.570.1 0.48 -2.0
525,882 + Xcc-8004.570.1 0.48 -0.0
525,882 + Xcc-8004.570.1 0.48 -1.9
525,883 - Xcc-8004.570.1 0.48 +0.7
525,883 - Xcc-8004.570.1 0.48 +0.0
525,883 - Xcc-8004.570.1 0.48 -1.3
525,883 - Xcc-8004.570.1 0.48 +0.1

Or see this region's nucleotide sequence