Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.542.1 and Xcc-8004.543.1 overlap by 4 nucleotides Xcc-8004.543.1 and Xcc-8004.544.1 are separated by 42 nucleotides Xcc-8004.544.1 and Xcc-8004.545.1 are separated by 16 nucleotides
Xcc-8004.542.1: Xcc-8004.542.1 - Malto-oligosyltrehalose synthase (EC 5.4.99.15), at 501,673 to 504,291
Xcc-8004.542.1
Xcc-8004.543.1: Xcc-8004.543.1 - FIG01210004: hypothetical protein, at 504,288 to 504,476
Xcc-8004.543.1
Xcc-8004.544.1: Xcc-8004.544.1 - Glycogen debranching enzyme (EC 3.2.1.-), at 504,519 to 506,681
Xcc-8004.544.1
Xcc-8004.545.1: Xcc-8004.545.1 - Nucleoside-diphosphate-sugar epimerases, at 506,698 to 507,330
Xcc-8004.545.1
Position (kb)
504
505
506
507 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 503.773 kb on + strand, within Xcc-8004.542.1 at 503.836 kb on + strand, within Xcc-8004.542.1 at 503.836 kb on + strand, within Xcc-8004.542.1 at 503.837 kb on - strand, within Xcc-8004.542.1 at 503.984 kb on - strand, within Xcc-8004.542.1 at 504.000 kb on - strand, within Xcc-8004.542.1 at 504.000 kb on - strand, within Xcc-8004.542.1 at 504.236 kb on + strand at 504.236 kb on + strand at 504.237 kb on - strand at 504.337 kb on + strand, within Xcc-8004.543.1 at 504.337 kb on + strand, within Xcc-8004.543.1 at 504.337 kb on + strand, within Xcc-8004.543.1 at 504.337 kb on + strand, within Xcc-8004.543.1 at 504.337 kb on + strand, within Xcc-8004.543.1 at 504.338 kb on - strand, within Xcc-8004.543.1 at 504.338 kb on - strand, within Xcc-8004.543.1 at 504.458 kb on + strand at 504.459 kb on - strand at 504.474 kb on + strand at 504.506 kb on + strand at 504.507 kb on - strand at 504.507 kb on - strand at 504.507 kb on - strand at 504.618 kb on + strand at 504.619 kb on - strand at 504.619 kb on - strand at 504.619 kb on - strand at 504.692 kb on - strand at 504.699 kb on + strand at 504.699 kb on + strand at 504.777 kb on + strand, within Xcc-8004.544.1 at 504.777 kb on + strand, within Xcc-8004.544.1 at 504.777 kb on + strand, within Xcc-8004.544.1 at 504.778 kb on - strand, within Xcc-8004.544.1 at 504.812 kb on + strand, within Xcc-8004.544.1 at 504.813 kb on - strand, within Xcc-8004.544.1 at 504.832 kb on - strand, within Xcc-8004.544.1 at 504.832 kb on - strand, within Xcc-8004.544.1 at 504.882 kb on + strand, within Xcc-8004.544.1 at 504.974 kb on + strand, within Xcc-8004.544.1 at 504.974 kb on + strand, within Xcc-8004.544.1 at 504.975 kb on - strand, within Xcc-8004.544.1 at 504.975 kb on - strand, within Xcc-8004.544.1 at 504.975 kb on - strand, within Xcc-8004.544.1 at 505.026 kb on + strand, within Xcc-8004.544.1 at 505.026 kb on + strand, within Xcc-8004.544.1 at 505.026 kb on + strand, within Xcc-8004.544.1 at 505.026 kb on + strand, within Xcc-8004.544.1 at 505.027 kb on - strand, within Xcc-8004.544.1 at 505.191 kb on + strand, within Xcc-8004.544.1 at 505.191 kb on + strand, within Xcc-8004.544.1 at 505.191 kb on + strand, within Xcc-8004.544.1 at 505.191 kb on + strand, within Xcc-8004.544.1 at 505.192 kb on - strand, within Xcc-8004.544.1 at 505.227 kb on + strand, within Xcc-8004.544.1 at 505.227 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.264 kb on - strand, within Xcc-8004.544.1 at 505.350 kb on + strand, within Xcc-8004.544.1 at 505.351 kb on - strand, within Xcc-8004.544.1 at 505.419 kb on + strand, within Xcc-8004.544.1 at 505.419 kb on + strand, within Xcc-8004.544.1 at 505.419 kb on + strand, within Xcc-8004.544.1 at 505.420 kb on - strand, within Xcc-8004.544.1 at 505.420 kb on - strand, within Xcc-8004.544.1 at 505.420 kb on - strand, within Xcc-8004.544.1 at 505.450 kb on - strand, within Xcc-8004.544.1 at 505.475 kb on + strand, within Xcc-8004.544.1 at 505.600 kb on - strand, within Xcc-8004.544.1 at 505.705 kb on - strand, within Xcc-8004.544.1 at 505.923 kb on + strand, within Xcc-8004.544.1 at 505.924 kb on - strand, within Xcc-8004.544.1 at 505.924 kb on - strand, within Xcc-8004.544.1 at 505.924 kb on - strand, within Xcc-8004.544.1 at 505.982 kb on + strand, within Xcc-8004.544.1 at 505.982 kb on + strand, within Xcc-8004.544.1 at 505.983 kb on - strand, within Xcc-8004.544.1 at 505.983 kb on - strand, within Xcc-8004.544.1 at 505.995 kb on + strand, within Xcc-8004.544.1 at 505.995 kb on + strand, within Xcc-8004.544.1 at 505.995 kb on + strand, within Xcc-8004.544.1 at 506.126 kb on + strand, within Xcc-8004.544.1 at 506.151 kb on + strand, within Xcc-8004.544.1 at 506.151 kb on + strand, within Xcc-8004.544.1 at 507.058 kb on + strand, within Xcc-8004.545.1 at 507.059 kb on - strand, within Xcc-8004.545.1 at 507.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 503,773 + Xcc-8004.542.1 0.80 +0.7 503,836 + Xcc-8004.542.1 0.83 +1.5 503,836 + Xcc-8004.542.1 0.83 +1.8 503,837 - Xcc-8004.542.1 0.83 -0.3 503,984 - Xcc-8004.542.1 0.88 -0.4 504,000 - Xcc-8004.542.1 0.89 -1.1 504,000 - Xcc-8004.542.1 0.89 -2.2 504,236 + -0.4 504,236 + -1.6 504,237 - -0.4 504,337 + Xcc-8004.543.1 0.26 -1.7 504,337 + Xcc-8004.543.1 0.26 +1.2 504,337 + Xcc-8004.543.1 0.26 +0.4 504,337 + Xcc-8004.543.1 0.26 +0.6 504,337 + Xcc-8004.543.1 0.26 -0.9 504,338 - Xcc-8004.543.1 0.26 +0.3 504,338 - Xcc-8004.543.1 0.26 +0.2 504,458 + +1.6 504,459 - -1.4 504,474 + -0.5 504,506 + +0.2 504,507 - -0.7 504,507 - -0.5 504,507 - -1.0 504,618 + +1.2 504,619 - -0.3 504,619 - -1.9 504,619 - -2.0 504,692 - -1.0 504,699 + -3.6 504,699 + -2.4 504,777 + Xcc-8004.544.1 0.12 +1.0 504,777 + Xcc-8004.544.1 0.12 +1.5 504,777 + Xcc-8004.544.1 0.12 -0.8 504,778 - Xcc-8004.544.1 0.12 -0.4 504,812 + Xcc-8004.544.1 0.14 +0.1 504,813 - Xcc-8004.544.1 0.14 -1.4 504,832 - Xcc-8004.544.1 0.14 -0.1 504,832 - Xcc-8004.544.1 0.14 -0.2 504,882 + Xcc-8004.544.1 0.17 -0.6 504,974 + Xcc-8004.544.1 0.21 -0.1 504,974 + Xcc-8004.544.1 0.21 +0.3 504,975 - Xcc-8004.544.1 0.21 -0.4 504,975 - Xcc-8004.544.1 0.21 -0.8 504,975 - Xcc-8004.544.1 0.21 -2.0 505,026 + Xcc-8004.544.1 0.23 +0.3 505,026 + Xcc-8004.544.1 0.23 -0.4 505,026 + Xcc-8004.544.1 0.23 -0.3 505,026 + Xcc-8004.544.1 0.23 +0.2 505,027 - Xcc-8004.544.1 0.23 -0.6 505,191 + Xcc-8004.544.1 0.31 -1.1 505,191 + Xcc-8004.544.1 0.31 +0.8 505,191 + Xcc-8004.544.1 0.31 -2.4 505,191 + Xcc-8004.544.1 0.31 -0.3 505,192 - Xcc-8004.544.1 0.31 -1.6 505,227 + Xcc-8004.544.1 0.33 -1.2 505,227 + Xcc-8004.544.1 0.33 +1.0 505,263 + Xcc-8004.544.1 0.34 -0.2 505,263 + Xcc-8004.544.1 0.34 -1.3 505,263 + Xcc-8004.544.1 0.34 -0.6 505,263 + Xcc-8004.544.1 0.34 -0.2 505,263 + Xcc-8004.544.1 0.34 -0.0 505,263 + Xcc-8004.544.1 0.34 -0.1 505,264 - Xcc-8004.544.1 0.34 +0.1 505,350 + Xcc-8004.544.1 0.38 +0.4 505,351 - Xcc-8004.544.1 0.38 -1.7 505,419 + Xcc-8004.544.1 0.42 +1.1 505,419 + Xcc-8004.544.1 0.42 -0.2 505,419 + Xcc-8004.544.1 0.42 -2.8 505,420 - Xcc-8004.544.1 0.42 -1.7 505,420 - Xcc-8004.544.1 0.42 -3.2 505,420 - Xcc-8004.544.1 0.42 -1.2 505,450 - Xcc-8004.544.1 0.43 -0.2 505,475 + Xcc-8004.544.1 0.44 +0.5 505,600 - Xcc-8004.544.1 0.50 -1.5 505,705 - Xcc-8004.544.1 0.55 -0.5 505,923 + Xcc-8004.544.1 0.65 -0.3 505,924 - Xcc-8004.544.1 0.65 -0.1 505,924 - Xcc-8004.544.1 0.65 -1.8 505,924 - Xcc-8004.544.1 0.65 +0.0 505,982 + Xcc-8004.544.1 0.68 -1.4 505,982 + Xcc-8004.544.1 0.68 +0.2 505,983 - Xcc-8004.544.1 0.68 +0.0 505,983 - Xcc-8004.544.1 0.68 -2.7 505,995 + Xcc-8004.544.1 0.68 +0.6 505,995 + Xcc-8004.544.1 0.68 -2.6 505,995 + Xcc-8004.544.1 0.68 +0.6 506,126 + Xcc-8004.544.1 0.74 -1.1 506,151 + Xcc-8004.544.1 0.75 +0.2 506,151 + Xcc-8004.544.1 0.75 -1.7 507,058 + Xcc-8004.545.1 0.57 -0.7 507,059 - Xcc-8004.545.1 0.57 +1.5 507,424 + +0.2
Or see this region's nucleotide sequence