Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5371.1 and Xcc-8004.5373.1 are separated by 83 nucleotides Xcc-8004.5373.1 and Xcc-8004.5376.1 are separated by 827 nucleotides
Xcc-8004.5371.1: Xcc-8004.5371.1 - Glutathione peroxidase family protein, at 5,102,827 to 5,103,372
Xcc-8004.5371.1
Xcc-8004.5373.1: Xcc-8004.5373.1 - FIG01210567: hypothetical protein, at 5,103,456 to 5,103,857
Xcc-8004.5373.1
Xcc-8004.5376.1: Xcc-8004.5376.1 - DNA recombination protein RmuC, at 5,104,685 to 5,106,265
Xcc-8004.5376.1
Position (kb) 5103
5104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5102.514 kb on - strand at 5102.514 kb on - strand at 5102.514 kb on - strand at 5102.514 kb on - strand at 5102.538 kb on - strand at 5102.538 kb on - strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.596 kb on + strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.597 kb on - strand at 5102.624 kb on + strand at 5102.624 kb on + strand at 5102.647 kb on + strand at 5102.647 kb on + strand at 5102.647 kb on + strand at 5102.647 kb on + strand at 5102.647 kb on + strand at 5102.647 kb on + strand at 5102.647 kb on + strand at 5102.647 kb on + strand at 5102.647 kb on + strand at 5102.647 kb on + strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.648 kb on - strand at 5102.693 kb on + strand at 5102.693 kb on + strand at 5102.693 kb on + strand at 5102.693 kb on + strand at 5102.694 kb on - strand at 5102.694 kb on - strand at 5102.694 kb on - strand at 5102.694 kb on - strand at 5102.694 kb on - strand at 5102.694 kb on - strand at 5102.694 kb on - strand at 5102.694 kb on - strand at 5102.744 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.802 kb on + strand at 5102.803 kb on - strand at 5102.803 kb on - strand at 5102.803 kb on - strand at 5102.803 kb on - strand at 5102.803 kb on - strand at 5102.803 kb on - strand at 5102.803 kb on - strand at 5102.803 kb on - strand at 5102.803 kb on - strand at 5102.829 kb on - strand at 5103.050 kb on + strand, within Xcc-8004.5371.1 at 5103.050 kb on + strand, within Xcc-8004.5371.1 at 5103.050 kb on + strand, within Xcc-8004.5371.1 at 5103.050 kb on + strand, within Xcc-8004.5371.1 at 5103.050 kb on + strand, within Xcc-8004.5371.1 at 5103.051 kb on - strand, within Xcc-8004.5371.1 at 5103.051 kb on - strand, within Xcc-8004.5371.1 at 5103.051 kb on - strand, within Xcc-8004.5371.1 at 5103.113 kb on + strand, within Xcc-8004.5371.1 at 5103.113 kb on + strand, within Xcc-8004.5371.1 at 5103.113 kb on + strand, within Xcc-8004.5371.1 at 5103.113 kb on + strand, within Xcc-8004.5371.1 at 5103.113 kb on + strand, within Xcc-8004.5371.1 at 5103.114 kb on - strand, within Xcc-8004.5371.1 at 5103.114 kb on - strand, within Xcc-8004.5371.1 at 5103.114 kb on - strand, within Xcc-8004.5371.1 at 5103.114 kb on - strand, within Xcc-8004.5371.1 at 5103.114 kb on - strand, within Xcc-8004.5371.1 at 5103.114 kb on - strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.117 kb on + strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.118 kb on - strand, within Xcc-8004.5371.1 at 5103.225 kb on - strand, within Xcc-8004.5371.1 at 5103.245 kb on + strand, within Xcc-8004.5371.1 at 5103.245 kb on + strand, within Xcc-8004.5371.1 at 5103.245 kb on + strand, within Xcc-8004.5371.1 at 5103.246 kb on - strand, within Xcc-8004.5371.1 at 5103.246 kb on - strand, within Xcc-8004.5371.1 at 5103.246 kb on - strand, within Xcc-8004.5371.1 at 5103.246 kb on - strand, within Xcc-8004.5371.1 at 5103.406 kb on - strand at 5103.406 kb on - strand at 5103.443 kb on + strand at 5103.443 kb on + strand at 5103.444 kb on - strand at 5103.634 kb on + strand, within Xcc-8004.5373.1 at 5103.635 kb on - strand, within Xcc-8004.5373.1 at 5103.669 kb on + strand, within Xcc-8004.5373.1 at 5103.797 kb on + strand, within Xcc-8004.5373.1 at 5103.797 kb on + strand, within Xcc-8004.5373.1 at 5103.797 kb on + strand, within Xcc-8004.5373.1 at 5103.797 kb on + strand, within Xcc-8004.5373.1 at 5103.797 kb on + strand, within Xcc-8004.5373.1 at 5103.798 kb on - strand, within Xcc-8004.5373.1 at 5103.798 kb on - strand, within Xcc-8004.5373.1 at 5103.838 kb on + strand at 5103.838 kb on + strand at 5103.838 kb on + strand at 5103.838 kb on + strand at 5103.838 kb on + strand at 5103.838 kb on + strand at 5103.838 kb on + strand at 5103.838 kb on + strand at 5103.838 kb on + strand at 5103.839 kb on - strand at 5103.839 kb on - strand at 5103.839 kb on - strand at 5103.839 kb on - strand at 5103.839 kb on - strand at 5103.839 kb on - strand at 5103.839 kb on - strand at 5103.839 kb on - strand at 5103.839 kb on - strand at 5103.956 kb on + strand at 5103.956 kb on + strand at 5103.957 kb on - strand at 5103.957 kb on - strand at 5103.957 kb on - strand at 5103.957 kb on - strand at 5103.957 kb on - strand at 5104.012 kb on + strand at 5104.012 kb on + strand at 5104.055 kb on + strand at 5104.055 kb on + strand at 5104.055 kb on + strand at 5104.055 kb on + strand at 5104.055 kb on + strand at 5104.056 kb on - strand at 5104.056 kb on - strand at 5104.056 kb on - strand at 5104.121 kb on - strand at 5104.121 kb on - strand at 5104.121 kb on - strand at 5104.121 kb on - strand at 5104.184 kb on + strand at 5104.184 kb on + strand at 5104.184 kb on + strand at 5104.185 kb on - strand at 5104.185 kb on - strand at 5104.262 kb on + strand at 5104.263 kb on - strand at 5104.263 kb on - strand at 5104.263 kb on - strand at 5104.298 kb on + strand at 5104.298 kb on + strand at 5104.298 kb on + strand at 5104.298 kb on + strand at 5104.298 kb on + strand at 5104.298 kb on + strand at 5104.298 kb on + strand at 5104.298 kb on + strand at 5104.298 kb on + strand at 5104.298 kb on + strand at 5104.299 kb on - strand at 5104.299 kb on - strand at 5104.299 kb on - strand at 5104.299 kb on - strand at 5104.299 kb on - strand at 5104.362 kb on + strand at 5104.362 kb on + strand at 5104.362 kb on + strand at 5104.363 kb on - strand at 5104.363 kb on - strand at 5104.363 kb on - strand at 5104.363 kb on - strand at 5104.363 kb on - strand at 5104.363 kb on - strand at 5104.363 kb on - strand at 5104.363 kb on - strand at 5104.363 kb on - strand at 5104.398 kb on + strand at 5104.398 kb on + strand at 5104.398 kb on + strand at 5104.399 kb on - strand at 5104.399 kb on - strand at 5104.441 kb on - strand at 5104.476 kb on + strand at 5104.476 kb on + strand at 5104.476 kb on + strand at 5104.476 kb on + strand at 5104.476 kb on + strand at 5104.476 kb on + strand at 5104.601 kb on + strand at 5104.608 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 5,102,514 - -1.5 5,102,514 - +0.7 5,102,514 - -1.4 5,102,514 - -2.9 5,102,538 - +2.2 5,102,538 - -1.6 5,102,596 + -0.4 5,102,596 + -2.0 5,102,596 + -1.3 5,102,596 + +1.0 5,102,596 + +1.2 5,102,596 + -2.5 5,102,596 + +0.6 5,102,596 + +1.7 5,102,596 + +0.2 5,102,596 + -0.4 5,102,596 + +0.2 5,102,596 + -0.1 5,102,596 + -2.0 5,102,596 + +0.4 5,102,596 + -0.4 5,102,596 + +0.5 5,102,596 + -1.5 5,102,596 + -1.8 5,102,596 + -0.9 5,102,596 + +0.7 5,102,596 + +0.2 5,102,596 + -3.2 5,102,597 - +0.8 5,102,597 - -1.1 5,102,597 - -0.5 5,102,597 - -0.1 5,102,597 - +0.2 5,102,597 - -0.7 5,102,597 - -1.1 5,102,597 - +0.9 5,102,597 - -0.0 5,102,597 - +0.7 5,102,597 - -0.5 5,102,597 - +0.1 5,102,597 - -2.3 5,102,597 - +3.6 5,102,597 - +0.3 5,102,597 - +2.1 5,102,597 - +1.0 5,102,597 - +0.1 5,102,597 - +0.0 5,102,624 + -0.5 5,102,624 + -2.6 5,102,647 + +1.7 5,102,647 + +1.3 5,102,647 + -0.7 5,102,647 + -0.5 5,102,647 + -0.3 5,102,647 + -0.5 5,102,647 + +0.4 5,102,647 + -3.2 5,102,647 + +1.1 5,102,647 + -0.6 5,102,648 - -1.2 5,102,648 - -2.3 5,102,648 - -2.0 5,102,648 - +1.8 5,102,648 - -0.9 5,102,648 - +0.5 5,102,648 - +1.6 5,102,648 - +0.7 5,102,648 - +0.7 5,102,648 - +1.5 5,102,648 - +2.9 5,102,648 - +0.8 5,102,648 - -0.4 5,102,648 - -2.0 5,102,648 - +0.5 5,102,693 + -1.2 5,102,693 + -1.0 5,102,693 + +1.1 5,102,693 + +0.3 5,102,694 - -0.9 5,102,694 - -0.3 5,102,694 - -0.2 5,102,694 - +0.1 5,102,694 - +0.5 5,102,694 - -1.1 5,102,694 - +0.6 5,102,694 - -0.5 5,102,744 + +0.0 5,102,802 + -0.1 5,102,802 + +0.4 5,102,802 + -1.2 5,102,802 + -0.5 5,102,802 + -1.0 5,102,802 + -1.2 5,102,802 + -2.3 5,102,802 + -2.2 5,102,802 + -0.8 5,102,802 + +0.2 5,102,802 + +2.5 5,102,802 + -3.2 5,102,802 + -0.3 5,102,802 + +0.1 5,102,802 + -1.5 5,102,803 - +0.3 5,102,803 - +0.8 5,102,803 - +0.5 5,102,803 - +0.1 5,102,803 - +0.7 5,102,803 - +1.4 5,102,803 - -0.1 5,102,803 - -0.6 5,102,803 - -0.5 5,102,829 - +0.3 5,103,050 + Xcc-8004.5371.1 0.41 -0.2 5,103,050 + Xcc-8004.5371.1 0.41 +0.4 5,103,050 + Xcc-8004.5371.1 0.41 +2.2 5,103,050 + Xcc-8004.5371.1 0.41 +0.1 5,103,050 + Xcc-8004.5371.1 0.41 -0.8 5,103,051 - Xcc-8004.5371.1 0.41 +0.3 5,103,051 - Xcc-8004.5371.1 0.41 +1.6 5,103,051 - Xcc-8004.5371.1 0.41 -1.5 5,103,113 + Xcc-8004.5371.1 0.52 -0.3 5,103,113 + Xcc-8004.5371.1 0.52 -0.3 5,103,113 + Xcc-8004.5371.1 0.52 -1.3 5,103,113 + Xcc-8004.5371.1 0.52 +0.1 5,103,113 + Xcc-8004.5371.1 0.52 -2.1 5,103,114 - Xcc-8004.5371.1 0.53 -1.4 5,103,114 - Xcc-8004.5371.1 0.53 -1.7 5,103,114 - Xcc-8004.5371.1 0.53 -0.2 5,103,114 - Xcc-8004.5371.1 0.53 +0.0 5,103,114 - Xcc-8004.5371.1 0.53 +1.9 5,103,114 - Xcc-8004.5371.1 0.53 +1.4 5,103,117 + Xcc-8004.5371.1 0.53 +0.8 5,103,117 + Xcc-8004.5371.1 0.53 -0.1 5,103,117 + Xcc-8004.5371.1 0.53 -1.4 5,103,117 + Xcc-8004.5371.1 0.53 +1.4 5,103,117 + Xcc-8004.5371.1 0.53 +0.9 5,103,117 + Xcc-8004.5371.1 0.53 -0.0 5,103,117 + Xcc-8004.5371.1 0.53 +0.2 5,103,117 + Xcc-8004.5371.1 0.53 -0.1 5,103,117 + Xcc-8004.5371.1 0.53 +1.5 5,103,117 + Xcc-8004.5371.1 0.53 -0.3 5,103,117 + Xcc-8004.5371.1 0.53 -0.9 5,103,117 + Xcc-8004.5371.1 0.53 -0.3 5,103,117 + Xcc-8004.5371.1 0.53 -0.8 5,103,117 + Xcc-8004.5371.1 0.53 +0.1 5,103,118 - Xcc-8004.5371.1 0.53 +0.0 5,103,118 - Xcc-8004.5371.1 0.53 +1.8 5,103,118 - Xcc-8004.5371.1 0.53 +0.2 5,103,118 - Xcc-8004.5371.1 0.53 +0.9 5,103,118 - Xcc-8004.5371.1 0.53 +0.0 5,103,118 - Xcc-8004.5371.1 0.53 -1.3 5,103,118 - Xcc-8004.5371.1 0.53 -0.7 5,103,118 - Xcc-8004.5371.1 0.53 +0.8 5,103,118 - Xcc-8004.5371.1 0.53 -0.1 5,103,118 - Xcc-8004.5371.1 0.53 -2.4 5,103,118 - Xcc-8004.5371.1 0.53 -1.3 5,103,118 - Xcc-8004.5371.1 0.53 -0.6 5,103,118 - Xcc-8004.5371.1 0.53 -0.2 5,103,118 - Xcc-8004.5371.1 0.53 -1.0 5,103,118 - Xcc-8004.5371.1 0.53 -0.2 5,103,225 - Xcc-8004.5371.1 0.73 -0.9 5,103,245 + Xcc-8004.5371.1 0.77 +0.4 5,103,245 + Xcc-8004.5371.1 0.77 +0.5 5,103,245 + Xcc-8004.5371.1 0.77 -0.3 5,103,246 - Xcc-8004.5371.1 0.77 -0.8 5,103,246 - Xcc-8004.5371.1 0.77 -2.3 5,103,246 - Xcc-8004.5371.1 0.77 +0.9 5,103,246 - Xcc-8004.5371.1 0.77 -2.1 5,103,406 - -0.3 5,103,406 - +0.1 5,103,443 + +0.1 5,103,443 + +0.8 5,103,444 - -0.6 5,103,634 + Xcc-8004.5373.1 0.44 -1.6 5,103,635 - Xcc-8004.5373.1 0.45 -0.4 5,103,669 + Xcc-8004.5373.1 0.53 -0.5 5,103,797 + Xcc-8004.5373.1 0.85 -0.5 5,103,797 + Xcc-8004.5373.1 0.85 -0.5 5,103,797 + Xcc-8004.5373.1 0.85 -1.7 5,103,797 + Xcc-8004.5373.1 0.85 -2.1 5,103,797 + Xcc-8004.5373.1 0.85 +0.6 5,103,798 - Xcc-8004.5373.1 0.85 -0.1 5,103,798 - Xcc-8004.5373.1 0.85 -1.6 5,103,838 + +1.0 5,103,838 + -0.2 5,103,838 + -3.1 5,103,838 + -0.6 5,103,838 + +1.1 5,103,838 + +0.9 5,103,838 + -1.3 5,103,838 + +0.6 5,103,838 + -0.4 5,103,839 - +0.4 5,103,839 - +1.7 5,103,839 - +0.7 5,103,839 - +0.3 5,103,839 - +0.7 5,103,839 - -1.3 5,103,839 - -0.9 5,103,839 - -0.2 5,103,839 - -1.8 5,103,956 + +2.0 5,103,956 + +2.4 5,103,957 - +0.9 5,103,957 - -0.1 5,103,957 - -2.4 5,103,957 - -0.9 5,103,957 - +1.0 5,104,012 + +3.1 5,104,012 + +0.2 5,104,055 + +0.6 5,104,055 + -0.6 5,104,055 + -0.7 5,104,055 + +0.3 5,104,055 + -2.3 5,104,056 - +0.1 5,104,056 - +0.3 5,104,056 - +0.1 5,104,121 - +1.4 5,104,121 - +0.5 5,104,121 - +0.4 5,104,121 - +1.1 5,104,184 + -1.4 5,104,184 + +0.7 5,104,184 + -0.2 5,104,185 - +0.3 5,104,185 - +0.1 5,104,262 + +1.0 5,104,263 - +2.6 5,104,263 - +0.7 5,104,263 - +0.4 5,104,298 + +0.6 5,104,298 + +0.3 5,104,298 + +0.1 5,104,298 + +0.4 5,104,298 + -2.0 5,104,298 + -0.9 5,104,298 + -2.3 5,104,298 + -2.4 5,104,298 + -1.0 5,104,298 + +0.2 5,104,299 - +0.6 5,104,299 - -0.5 5,104,299 - +1.2 5,104,299 - +0.7 5,104,299 - -0.7 5,104,362 + +1.2 5,104,362 + -1.0 5,104,362 + +0.7 5,104,363 - -1.1 5,104,363 - -0.7 5,104,363 - -0.8 5,104,363 - +0.8 5,104,363 - -1.6 5,104,363 - -0.5 5,104,363 - -0.5 5,104,363 - -1.9 5,104,363 - +2.0 5,104,398 + -0.0 5,104,398 + +0.4 5,104,398 + -2.3 5,104,399 - +0.2 5,104,399 - +0.9 5,104,441 - -0.2 5,104,476 + +1.3 5,104,476 + -1.0 5,104,476 + +2.3 5,104,476 + -1.1 5,104,476 + -0.4 5,104,476 + +1.5 5,104,601 + +0.2 5,104,608 + -2.7
Or see this region's nucleotide sequence