Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.470.1 and Xcc-8004.471.1 are separated by 184 nucleotides Xcc-8004.471.1 and Xcc-8004.472.1 are separated by 348 nucleotides
Xcc-8004.470.1: Xcc-8004.470.1 - Glycerol uptake facilitator protein, at 431,807 to 432,631
Xcc-8004.470.1
Xcc-8004.471.1: Xcc-8004.471.1 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 432,816 to 434,342
Xcc-8004.471.1
Xcc-8004.472.1: Xcc-8004.472.1 - Glycerol-3-phosphate regulon repressor, DeoR family, at 434,691 to 435,470
Xcc-8004.472.1
Position (kb) 432
433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 431.889 kb on + strand at 431.946 kb on + strand, within Xcc-8004.470.1 at 431.946 kb on + strand, within Xcc-8004.470.1 at 431.947 kb on - strand, within Xcc-8004.470.1 at 431.947 kb on - strand, within Xcc-8004.470.1 at 431.947 kb on - strand, within Xcc-8004.470.1 at 431.947 kb on - strand, within Xcc-8004.470.1 at 431.991 kb on + strand, within Xcc-8004.470.1 at 432.151 kb on + strand, within Xcc-8004.470.1 at 432.285 kb on + strand, within Xcc-8004.470.1 at 432.285 kb on + strand, within Xcc-8004.470.1 at 432.285 kb on + strand, within Xcc-8004.470.1 at 432.286 kb on - strand, within Xcc-8004.470.1 at 432.286 kb on - strand, within Xcc-8004.470.1 at 432.286 kb on - strand, within Xcc-8004.470.1 at 432.286 kb on - strand, within Xcc-8004.470.1 at 432.315 kb on + strand, within Xcc-8004.470.1 at 432.315 kb on + strand, within Xcc-8004.470.1 at 432.316 kb on - strand, within Xcc-8004.470.1 at 432.459 kb on + strand, within Xcc-8004.470.1 at 432.459 kb on + strand, within Xcc-8004.470.1 at 432.459 kb on + strand, within Xcc-8004.470.1 at 432.459 kb on + strand, within Xcc-8004.470.1 at 432.459 kb on + strand, within Xcc-8004.470.1 at 432.459 kb on + strand, within Xcc-8004.470.1 at 432.459 kb on + strand, within Xcc-8004.470.1 at 432.459 kb on + strand, within Xcc-8004.470.1 at 432.459 kb on + strand, within Xcc-8004.470.1 at 432.459 kb on + strand, within Xcc-8004.470.1 at 432.460 kb on - strand, within Xcc-8004.470.1 at 432.460 kb on - strand, within Xcc-8004.470.1 at 432.460 kb on - strand, within Xcc-8004.470.1 at 432.460 kb on - strand, within Xcc-8004.470.1 at 432.460 kb on - strand, within Xcc-8004.470.1 at 432.460 kb on - strand, within Xcc-8004.470.1 at 432.460 kb on - strand, within Xcc-8004.470.1 at 432.460 kb on - strand, within Xcc-8004.470.1 at 432.460 kb on - strand, within Xcc-8004.470.1 at 432.460 kb on - strand, within Xcc-8004.470.1 at 432.534 kb on + strand, within Xcc-8004.470.1 at 432.534 kb on + strand, within Xcc-8004.470.1 at 432.534 kb on + strand, within Xcc-8004.470.1 at 432.543 kb on + strand, within Xcc-8004.470.1 at 432.543 kb on + strand, within Xcc-8004.470.1 at 432.543 kb on + strand, within Xcc-8004.470.1 at 432.543 kb on + strand, within Xcc-8004.470.1 at 432.544 kb on - strand, within Xcc-8004.470.1 at 432.544 kb on - strand, within Xcc-8004.470.1 at 432.544 kb on - strand, within Xcc-8004.470.1 at 432.544 kb on - strand, within Xcc-8004.470.1 at 432.657 kb on + strand at 432.771 kb on + strand at 432.906 kb on + strand at 432.979 kb on + strand, within Xcc-8004.471.1 at 433.070 kb on + strand, within Xcc-8004.471.1 at 433.330 kb on + strand, within Xcc-8004.471.1 at 433.330 kb on + strand, within Xcc-8004.471.1 at 433.435 kb on + strand, within Xcc-8004.471.1 at 433.507 kb on + strand, within Xcc-8004.471.1 at 433.549 kb on + strand, within Xcc-8004.471.1 at 433.549 kb on + strand, within Xcc-8004.471.1 at 433.549 kb on + strand, within Xcc-8004.471.1 at 433.594 kb on + strand, within Xcc-8004.471.1 at 433.594 kb on + strand, within Xcc-8004.471.1 at 433.594 kb on + strand, within Xcc-8004.471.1 at 433.820 kb on + strand, within Xcc-8004.471.1 at 433.906 kb on + strand, within Xcc-8004.471.1 at 433.906 kb on + strand, within Xcc-8004.471.1 at 433.906 kb on + strand, within Xcc-8004.471.1 at 434.121 kb on + strand, within Xcc-8004.471.1 at 434.121 kb on + strand, within Xcc-8004.471.1 at 434.121 kb on + strand, within Xcc-8004.471.1 at 434.121 kb on + strand, within Xcc-8004.471.1 at 434.164 kb on + strand, within Xcc-8004.471.1 at 434.165 kb on - strand, within Xcc-8004.471.1 at 434.219 kb on + strand at 434.219 kb on + strand at 434.219 kb on + strand at 434.219 kb on + strand at 434.329 kb on + strand at 434.329 kb on + strand at 434.329 kb on + strand at 434.329 kb on + strand at 434.329 kb on + strand at 434.329 kb on + strand at 434.329 kb on + strand at 434.330 kb on - strand at 434.330 kb on - strand at 434.330 kb on - strand at 434.330 kb on - strand at 434.330 kb on - strand at 434.380 kb on + strand at 434.380 kb on + strand at 434.381 kb on - strand at 434.381 kb on - strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.438 kb on + strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.439 kb on - strand at 434.464 kb on - strand at 434.500 kb on - strand at 434.500 kb on - strand at 434.601 kb on + strand at 434.601 kb on + strand at 434.601 kb on + strand at 434.602 kb on - strand at 434.620 kb on + strand at 434.620 kb on + strand at 434.620 kb on + strand at 434.620 kb on + strand at 434.620 kb on + strand at 434.620 kb on + strand at 434.620 kb on + strand at 434.620 kb on + strand at 434.620 kb on + strand at 434.620 kb on + strand at 434.620 kb on + strand at 434.621 kb on - strand at 434.621 kb on - strand at 434.621 kb on - strand at 434.621 kb on - strand at 434.621 kb on - strand at 434.621 kb on - strand at 434.621 kb on - strand at 435.262 kb on + strand, within Xcc-8004.472.1 at 435.262 kb on + strand, within Xcc-8004.472.1 at 435.262 kb on + strand, within Xcc-8004.472.1 at 435.262 kb on + strand, within Xcc-8004.472.1 at 435.262 kb on + strand, within Xcc-8004.472.1 at 435.263 kb on - strand, within Xcc-8004.472.1 at 435.263 kb on - strand, within Xcc-8004.472.1 at 435.263 kb on - strand, within Xcc-8004.472.1 at 435.263 kb on - strand, within Xcc-8004.472.1 at 435.342 kb on + strand, within Xcc-8004.472.1 at 435.342 kb on + strand, within Xcc-8004.472.1 at 435.342 kb on + strand, within Xcc-8004.472.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 431,889 + -0.3 431,946 + Xcc-8004.470.1 0.17 -0.2 431,946 + Xcc-8004.470.1 0.17 +0.2 431,947 - Xcc-8004.470.1 0.17 -1.7 431,947 - Xcc-8004.470.1 0.17 +0.7 431,947 - Xcc-8004.470.1 0.17 -0.8 431,947 - Xcc-8004.470.1 0.17 +0.3 431,991 + Xcc-8004.470.1 0.22 +1.3 432,151 + Xcc-8004.470.1 0.42 -0.3 432,285 + Xcc-8004.470.1 0.58 +0.6 432,285 + Xcc-8004.470.1 0.58 +0.8 432,285 + Xcc-8004.470.1 0.58 +1.5 432,286 - Xcc-8004.470.1 0.58 +1.1 432,286 - Xcc-8004.470.1 0.58 +1.2 432,286 - Xcc-8004.470.1 0.58 -0.6 432,286 - Xcc-8004.470.1 0.58 -0.8 432,315 + Xcc-8004.470.1 0.62 +1.3 432,315 + Xcc-8004.470.1 0.62 -2.6 432,316 - Xcc-8004.470.1 0.62 -0.2 432,459 + Xcc-8004.470.1 0.79 -1.6 432,459 + Xcc-8004.470.1 0.79 +0.1 432,459 + Xcc-8004.470.1 0.79 +1.2 432,459 + Xcc-8004.470.1 0.79 -0.8 432,459 + Xcc-8004.470.1 0.79 +0.1 432,459 + Xcc-8004.470.1 0.79 -2.3 432,459 + Xcc-8004.470.1 0.79 +2.4 432,459 + Xcc-8004.470.1 0.79 +0.2 432,459 + Xcc-8004.470.1 0.79 +0.2 432,459 + Xcc-8004.470.1 0.79 -0.7 432,460 - Xcc-8004.470.1 0.79 -0.8 432,460 - Xcc-8004.470.1 0.79 +1.1 432,460 - Xcc-8004.470.1 0.79 -0.1 432,460 - Xcc-8004.470.1 0.79 +0.4 432,460 - Xcc-8004.470.1 0.79 -0.5 432,460 - Xcc-8004.470.1 0.79 -0.7 432,460 - Xcc-8004.470.1 0.79 +0.1 432,460 - Xcc-8004.470.1 0.79 -2.5 432,460 - Xcc-8004.470.1 0.79 -2.0 432,460 - Xcc-8004.470.1 0.79 -1.1 432,534 + Xcc-8004.470.1 0.88 +0.5 432,534 + Xcc-8004.470.1 0.88 -0.4 432,534 + Xcc-8004.470.1 0.88 +0.2 432,543 + Xcc-8004.470.1 0.89 +2.1 432,543 + Xcc-8004.470.1 0.89 +1.5 432,543 + Xcc-8004.470.1 0.89 -0.8 432,543 + Xcc-8004.470.1 0.89 +0.4 432,544 - Xcc-8004.470.1 0.89 -0.7 432,544 - Xcc-8004.470.1 0.89 +0.7 432,544 - Xcc-8004.470.1 0.89 +1.8 432,544 - Xcc-8004.470.1 0.89 +0.2 432,657 + -2.0 432,771 + +0.2 432,906 + +0.1 432,979 + Xcc-8004.471.1 0.11 +2.3 433,070 + Xcc-8004.471.1 0.17 -0.3 433,330 + Xcc-8004.471.1 0.34 -1.3 433,330 + Xcc-8004.471.1 0.34 -0.3 433,435 + Xcc-8004.471.1 0.41 +0.7 433,507 + Xcc-8004.471.1 0.45 -0.9 433,549 + Xcc-8004.471.1 0.48 +3.3 433,549 + Xcc-8004.471.1 0.48 -0.1 433,549 + Xcc-8004.471.1 0.48 -1.1 433,594 + Xcc-8004.471.1 0.51 -2.1 433,594 + Xcc-8004.471.1 0.51 -1.5 433,594 + Xcc-8004.471.1 0.51 -1.4 433,820 + Xcc-8004.471.1 0.66 +2.3 433,906 + Xcc-8004.471.1 0.71 -1.4 433,906 + Xcc-8004.471.1 0.71 -1.0 433,906 + Xcc-8004.471.1 0.71 +0.7 434,121 + Xcc-8004.471.1 0.85 +1.7 434,121 + Xcc-8004.471.1 0.85 -0.2 434,121 + Xcc-8004.471.1 0.85 +1.5 434,121 + Xcc-8004.471.1 0.85 +0.3 434,164 + Xcc-8004.471.1 0.88 +1.3 434,165 - Xcc-8004.471.1 0.88 +0.0 434,219 + +0.3 434,219 + -1.6 434,219 + +0.7 434,219 + -1.7 434,329 + -2.0 434,329 + -0.6 434,329 + -0.2 434,329 + -0.3 434,329 + +0.1 434,329 + -1.3 434,329 + +0.2 434,330 - -0.5 434,330 - +1.3 434,330 - +0.2 434,330 - +0.3 434,330 - +1.3 434,380 + -0.3 434,380 + -1.8 434,381 - -2.2 434,381 - +0.2 434,438 + +0.1 434,438 + +0.7 434,438 + +1.3 434,438 + -1.4 434,438 + -0.1 434,438 + -1.0 434,438 + +1.2 434,438 + -0.6 434,438 + +0.4 434,438 + +0.4 434,438 + -1.1 434,438 + +0.4 434,438 + -1.1 434,438 + +0.6 434,438 + +0.1 434,438 + +1.2 434,438 + +0.2 434,438 + +0.5 434,438 + +1.3 434,438 + -1.6 434,438 + -1.2 434,438 + -2.8 434,438 + -1.9 434,438 + -0.2 434,438 + +0.4 434,438 + +0.1 434,438 + -1.3 434,438 + +0.9 434,438 + +1.0 434,438 + -0.2 434,438 + +0.1 434,438 + +0.8 434,438 + +0.8 434,438 + +1.7 434,438 + -1.8 434,438 + +0.4 434,438 + -1.6 434,438 + -0.4 434,439 - +2.1 434,439 - +0.4 434,439 - -0.4 434,439 - +0.3 434,439 - +0.3 434,439 - +0.3 434,439 - +0.6 434,439 - -1.1 434,439 - +0.0 434,439 - -1.5 434,439 - +1.3 434,439 - -0.1 434,439 - -0.4 434,439 - -0.1 434,439 - +1.5 434,439 - +0.3 434,439 - +1.1 434,439 - +1.0 434,439 - +0.1 434,439 - -2.2 434,439 - -1.3 434,439 - -0.6 434,439 - +1.7 434,439 - -0.4 434,439 - -2.7 434,439 - +0.3 434,439 - -1.7 434,439 - -1.0 434,439 - -0.1 434,439 - -0.9 434,439 - -2.1 434,439 - +0.6 434,439 - -2.1 434,439 - -0.7 434,439 - +1.1 434,439 - -0.3 434,439 - +0.1 434,439 - +0.2 434,439 - -0.6 434,439 - -1.6 434,439 - -0.8 434,439 - -1.8 434,439 - +0.7 434,464 - -2.1 434,500 - -1.0 434,500 - +1.6 434,601 + +0.5 434,601 + -1.5 434,601 + -1.3 434,602 - -1.8 434,620 + +0.2 434,620 + -0.8 434,620 + +0.7 434,620 + -0.3 434,620 + -0.5 434,620 + -0.2 434,620 + +0.9 434,620 + +0.0 434,620 + -1.2 434,620 + +0.6 434,620 + +2.1 434,621 - -1.7 434,621 - -0.6 434,621 - -0.8 434,621 - -0.7 434,621 - +0.5 434,621 - -1.9 434,621 - -1.1 435,262 + Xcc-8004.472.1 0.73 +1.2 435,262 + Xcc-8004.472.1 0.73 -2.7 435,262 + Xcc-8004.472.1 0.73 +1.5 435,262 + Xcc-8004.472.1 0.73 +0.2 435,262 + Xcc-8004.472.1 0.73 -0.5 435,263 - Xcc-8004.472.1 0.73 +2.8 435,263 - Xcc-8004.472.1 0.73 -0.6 435,263 - Xcc-8004.472.1 0.73 +1.3 435,263 - Xcc-8004.472.1 0.73 -0.8 435,342 + Xcc-8004.472.1 0.83 +0.3 435,342 + Xcc-8004.472.1 0.83 -0.1 435,342 + Xcc-8004.472.1 0.83 +0.3
Or see this region's nucleotide sequence