Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4285.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
4,098,966	+		Xcc-8004.4284.1	0.49	+2.0
4,098,966	+		Xcc-8004.4284.1	0.49	+0.1
4,098,966	+		Xcc-8004.4284.1	0.49	-1.5
4,098,967	-		Xcc-8004.4284.1	0.49	-1.2
4,098,967	-		Xcc-8004.4284.1	0.49	-1.1
4,098,967	-		Xcc-8004.4284.1	0.49	-0.2
4,098,967	-		Xcc-8004.4284.1	0.49	-0.2
4,098,967	-		Xcc-8004.4284.1	0.49	-0.6
4,099,078	-		Xcc-8004.4284.1	0.65	-0.2
4,099,182	+		Xcc-8004.4284.1	0.80	-0.7
4,099,182	+		Xcc-8004.4284.1	0.80	+0.1
4,099,182	+		Xcc-8004.4284.1	0.80	+0.3
4,099,194	+		Xcc-8004.4284.1	0.82	-0.0
4,099,194	+		Xcc-8004.4284.1	0.82	-1.4
4,099,194	+		Xcc-8004.4284.1	0.82	-2.0
4,099,194	+		Xcc-8004.4284.1	0.82	+0.6
4,099,194	+		Xcc-8004.4284.1	0.82	-0.5
4,099,194	+		Xcc-8004.4284.1	0.82	+1.3
4,099,194	+		Xcc-8004.4284.1	0.82	-2.9
4,099,194	+		Xcc-8004.4284.1	0.82	+0.9
4,099,194	+		Xcc-8004.4284.1	0.82	+2.7
4,099,194	+		Xcc-8004.4284.1	0.82	-0.2
4,099,194	+		Xcc-8004.4284.1	0.82	-0.0
4,099,194	+		Xcc-8004.4284.1	0.82	+0.4
4,099,194	+		Xcc-8004.4284.1	0.82	-0.5
4,099,194	+		Xcc-8004.4284.1	0.82	-0.6
4,099,194	+		Xcc-8004.4284.1	0.82	+0.1
4,099,195	-		Xcc-8004.4284.1	0.82	-1.4
4,099,195	-		Xcc-8004.4284.1	0.82	-2.0
4,099,195	-		Xcc-8004.4284.1	0.82	-0.5
4,099,195	-		Xcc-8004.4284.1	0.82	-1.2
4,099,195	-		Xcc-8004.4284.1	0.82	-1.2
4,099,195	-		Xcc-8004.4284.1	0.82	-0.2
4,099,195	-		Xcc-8004.4284.1	0.82	-0.0
4,099,195	-		Xcc-8004.4284.1	0.82	+0.2
4,099,195	-		Xcc-8004.4284.1	0.82	-1.2
4,099,195	-		Xcc-8004.4284.1	0.82	-1.0
4,099,195	-		Xcc-8004.4284.1	0.82	+1.2
4,099,195	-		Xcc-8004.4284.1	0.82	+1.8
4,099,195	-		Xcc-8004.4284.1	0.82	-0.1
4,099,195	-		Xcc-8004.4284.1	0.82	+0.7
4,099,195	-		Xcc-8004.4284.1	0.82	+1.4
4,099,195	-		Xcc-8004.4284.1	0.82	+0.7
4,099,196	+		Xcc-8004.4284.1	0.82	-1.2
4,099,196	+		Xcc-8004.4284.1	0.82	-1.3
4,099,196	+		Xcc-8004.4284.1	0.82	-0.2
4,099,196	+		Xcc-8004.4284.1	0.82	-0.6
4,099,196	+		Xcc-8004.4284.1	0.82	-1.7
4,099,197	-		Xcc-8004.4284.1	0.82	+0.0
4,099,197	-		Xcc-8004.4284.1	0.82	-1.6
4,099,197	-		Xcc-8004.4284.1	0.82	+0.8
4,099,197	-		Xcc-8004.4284.1	0.82	+0.4
4,099,276	-				-1.2
4,099,320	+				+0.5
4,099,320	+				+1.2
4,099,320	+				-1.1
4,099,320	+				+0.6
4,099,320	+				-0.6
4,099,321	-				+0.1
4,099,321	-				-2.1
4,099,321	-				+0.6
4,099,321	-				+0.4
4,099,321	-				-0.3
4,099,414	+				-1.0
4,099,414	+				+0.3
4,099,414	+				-0.6
4,099,414	+				+0.9
4,099,415	-				-1.8
4,099,418	+				+0.1
4,099,418	+				+1.8
4,099,418	+				+1.5
4,099,418	+				-1.3
4,099,418	+				+0.1
4,099,418	+				-1.0
4,099,418	+				+1.8
4,099,418	+				+0.5
4,099,418	+				-0.7
4,099,419	-				+0.6
4,099,419	-				+1.6
4,099,419	-				+1.4
4,099,419	-				-0.3
4,099,422	+				-1.4
4,099,422	+				-2.9
4,099,423	-				-1.6
4,099,423	-				+0.4
4,099,491	+				-2.5
4,099,491	+				-1.1
4,099,491	+				-2.3
4,099,492	-				-2.0
4,099,492	-				+1.4
4,099,492	-				-2.5
4,099,624	+				+0.6
4,099,625	-				+2.5
4,099,644	+				+0.3
4,099,644	+				-0.4
4,099,644	+				-1.4
4,099,644	+				-1.0
4,099,644	+				-0.7
4,099,644	+				-0.9
4,099,645	-				-2.0
4,099,645	-				+0.0
4,099,645	-				-0.2
4,099,645	-				-0.1
4,099,645	-				-0.4
4,099,674	-				-0.2
4,099,674	-				-0.2
4,099,703	+				-2.1
4,099,703	+				-0.2
4,099,703	+				-2.5
4,099,704	-				-0.9
4,099,704	-				-1.5
4,099,704	-				+1.1
4,099,704	-				+0.7
4,099,704	-				-1.8
4,099,704	-				-2.4
4,099,704	-				-0.0
4,099,728	+				+0.1
4,099,728	+				-1.1
4,099,729	-				-1.5
4,099,747	-				+1.0
4,099,747	-				-2.2
4,099,747	-				-2.0
4,099,952	+		Xcc-8004.4285.1	0.20	-2.2
4,099,953	-		Xcc-8004.4285.1	0.20	-0.4
4,100,221	-		Xcc-8004.4285.1	0.41	-2.4
4,100,221	-		Xcc-8004.4285.1	0.41	-0.9
4,100,221	-		Xcc-8004.4285.1	0.41	-1.2
4,100,526	-		Xcc-8004.4285.1	0.65	-1.5
4,100,526	-		Xcc-8004.4285.1	0.65	-2.5
4,100,526	-		Xcc-8004.4285.1	0.65	-1.5
4,100,526	-		Xcc-8004.4285.1	0.65	-2.2
4,100,546	+		Xcc-8004.4285.1	0.66	-1.2
4,100,546	+		Xcc-8004.4285.1	0.66	+0.6
4,100,546	+		Xcc-8004.4285.1	0.66	-0.5
4,100,546	+		Xcc-8004.4285.1	0.66	-1.1
4,100,547	-		Xcc-8004.4285.1	0.66	-0.8
4,100,547	-		Xcc-8004.4285.1	0.66	-2.9
4,100,547	-		Xcc-8004.4285.1	0.66	-2.3
4,100,547	-		Xcc-8004.4285.1	0.66	+0.2
4,100,547	-		Xcc-8004.4285.1	0.66	-2.3
4,100,547	-		Xcc-8004.4285.1	0.66	-0.4
4,100,547	-		Xcc-8004.4285.1	0.66	-1.7
4,100,630	+		Xcc-8004.4285.1	0.73	-1.4
4,100,630	+		Xcc-8004.4285.1	0.73	-1.8
4,100,630	+		Xcc-8004.4285.1	0.73	-1.3
4,100,630	+		Xcc-8004.4285.1	0.73	-3.2
4,100,631	-		Xcc-8004.4285.1	0.73	-1.5
4,100,631	-		Xcc-8004.4285.1	0.73	-0.3
4,100,660	+		Xcc-8004.4285.1	0.75	-0.6
4,100,660	+		Xcc-8004.4285.1	0.75	-1.9
4,100,660	+		Xcc-8004.4285.1	0.75	-1.7
4,100,661	-		Xcc-8004.4285.1	0.75	-2.5
4,100,759	+		Xcc-8004.4285.1	0.83	-2.6
4,100,778	+		Xcc-8004.4285.1	0.85	-0.2
4,100,778	+		Xcc-8004.4285.1	0.85	-0.2
4,100,778	+		Xcc-8004.4285.1	0.85	-2.4
4,100,810	+		Xcc-8004.4285.1	0.87	-1.2
4,100,810	+		Xcc-8004.4285.1	0.87	-0.6
4,100,811	-		Xcc-8004.4285.1	0.87	-0.0
4,100,811	-		Xcc-8004.4285.1	0.87	-2.0
4,100,811	-		Xcc-8004.4285.1	0.87	-1.5
4,100,850	+				+0.6
4,100,864	+				-0.9
4,100,864	+				-0.0
4,100,865	-				-1.4
4,100,865	-				-2.8
4,100,865	-				-1.1
4,100,888	+				-1.3
4,101,000	+				-2.2
4,101,001	-				-1.2
4,101,001	-				-0.2
4,101,001	-				-2.0
4,101,002	+				-0.0
4,101,002	+				+0.0
4,101,002	+				+0.7
4,101,003	-				-1.1
4,101,003	-				+1.4
4,101,218	+		Xcc-8004.4286.1	0.14	-1.1
4,101,218	+		Xcc-8004.4286.1	0.14	-1.6
4,101,218	+		Xcc-8004.4286.1	0.14	+1.8
4,101,218	+		Xcc-8004.4286.1	0.14	+2.4
4,101,218	+		Xcc-8004.4286.1	0.14	+1.5
4,101,218	+		Xcc-8004.4286.1	0.14	+0.6
4,101,218	+		Xcc-8004.4286.1	0.14	+1.9
4,101,219	-		Xcc-8004.4286.1	0.15	+1.4
4,101,219	-		Xcc-8004.4286.1	0.15	+2.0
4,101,219	-		Xcc-8004.4286.1	0.15	+2.6
4,101,509	+		Xcc-8004.4286.1	0.55	-0.4
4,101,510	-		Xcc-8004.4286.1	0.55	+2.1
4,101,510	-		Xcc-8004.4286.1	0.55	-0.2
4,101,510	-		Xcc-8004.4286.1	0.55	-1.1
4,101,510	-		Xcc-8004.4286.1	0.55	-0.0
4,101,510	-		Xcc-8004.4286.1	0.55	-1.8
4,101,671	+		Xcc-8004.4286.1	0.78	+2.2
4,101,671	+		Xcc-8004.4286.1	0.78	+2.9
4,101,671	+		Xcc-8004.4286.1	0.78	-0.4
4,101,671	+		Xcc-8004.4286.1	0.78	+2.7
4,101,671	+		Xcc-8004.4286.1	0.78	+0.0
4,101,671	+		Xcc-8004.4286.1	0.78	+1.6
4,101,671	+		Xcc-8004.4286.1	0.78	+4.5
4,101,671	+		Xcc-8004.4286.1	0.78	-1.1
4,101,671	+		Xcc-8004.4286.1	0.78	+2.4
4,101,671	+		Xcc-8004.4286.1	0.78	-1.4
4,101,671	+		Xcc-8004.4286.1	0.78	-1.4
4,101,671	+		Xcc-8004.4286.1	0.78	+4.1
4,101,672	-		Xcc-8004.4286.1	0.78	-0.6
4,101,672	-		Xcc-8004.4286.1	0.78	-2.0
4,101,672	-		Xcc-8004.4286.1	0.78	+0.6
4,101,672	-		Xcc-8004.4286.1	0.78	+1.9
4,101,672	-		Xcc-8004.4286.1	0.78	-1.0
4,101,719	+		Xcc-8004.4286.1	0.85	+0.4
4,101,719	+		Xcc-8004.4286.1	0.85	+2.0
4,101,720	-		Xcc-8004.4286.1	0.85	+2.0
4,101,720	-		Xcc-8004.4286.1	0.85	+1.8
4,101,720	-		Xcc-8004.4286.1	0.85	+0.8
4,101,720	-		Xcc-8004.4286.1	0.85	+3.0
4,101,771	+				-0.8
4,101,772	-				+4.1