Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.374.1 and Xcc-8004.375.1 overlap by 1 nucleotides Xcc-8004.375.1 and Xcc-8004.376.1 are separated by 136 nucleotides
Xcc-8004.374.1: Xcc-8004.374.1 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 356,337 to 357,917
Xcc-8004.374.1
Xcc-8004.375.1: Xcc-8004.375.1 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 357,917 to 359,377
Xcc-8004.375.1
Xcc-8004.376.1: Xcc-8004.376.1 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 359,514 to 360,677
Xcc-8004.376.1
Position (kb) 357
358
359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.182 kb on - strand, within Xcc-8004.374.1 at 357.273 kb on + strand, within Xcc-8004.374.1 at 357.273 kb on + strand, within Xcc-8004.374.1 at 357.280 kb on - strand, within Xcc-8004.374.1 at 357.611 kb on + strand, within Xcc-8004.374.1 at 357.611 kb on + strand, within Xcc-8004.374.1 at 357.612 kb on - strand, within Xcc-8004.374.1 at 357.612 kb on - strand, within Xcc-8004.374.1 at 357.659 kb on - strand, within Xcc-8004.374.1 at 357.712 kb on - strand, within Xcc-8004.374.1 at 357.776 kb on - strand at 358.585 kb on - strand, within Xcc-8004.375.1 at 358.585 kb on - strand, within Xcc-8004.375.1 at 358.851 kb on + strand, within Xcc-8004.375.1 at 358.851 kb on + strand, within Xcc-8004.375.1 at 359.484 kb on + strand at 359.484 kb on + strand at 359.484 kb on + strand at 359.484 kb on + strand at 359.485 kb on - strand at 359.485 kb on - strand at 359.485 kb on - strand at 359.485 kb on - strand at 359.485 kb on - strand at 359.485 kb on - strand at 359.492 kb on - strand at 359.515 kb on + strand at 359.515 kb on + strand at 359.516 kb on - strand at 359.516 kb on - strand at 359.549 kb on + strand at 359.550 kb on - strand at 359.550 kb on - strand at 359.646 kb on + strand, within Xcc-8004.376.1 at 359.646 kb on + strand, within Xcc-8004.376.1 at 359.647 kb on - strand, within Xcc-8004.376.1 at 359.647 kb on - strand, within Xcc-8004.376.1 at 359.647 kb on - strand, within Xcc-8004.376.1 at 359.647 kb on - strand, within Xcc-8004.376.1 at 359.747 kb on - strand, within Xcc-8004.376.1 at 359.747 kb on - strand, within Xcc-8004.376.1 at 359.779 kb on + strand, within Xcc-8004.376.1 at 359.780 kb on - strand, within Xcc-8004.376.1 at 359.916 kb on + strand, within Xcc-8004.376.1 at 359.916 kb on + strand, within Xcc-8004.376.1 at 360.122 kb on - strand, within Xcc-8004.376.1 at 360.122 kb on - strand, within Xcc-8004.376.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 357,181 + Xcc-8004.374.1 0.53 -0.5 357,181 + Xcc-8004.374.1 0.53 -1.3 357,181 + Xcc-8004.374.1 0.53 +2.1 357,181 + Xcc-8004.374.1 0.53 -0.7 357,181 + Xcc-8004.374.1 0.53 -0.6 357,181 + Xcc-8004.374.1 0.53 +0.3 357,182 - Xcc-8004.374.1 0.53 -0.3 357,273 + Xcc-8004.374.1 0.59 +0.4 357,273 + Xcc-8004.374.1 0.59 -0.5 357,280 - Xcc-8004.374.1 0.60 -0.4 357,611 + Xcc-8004.374.1 0.81 +1.5 357,611 + Xcc-8004.374.1 0.81 +1.1 357,612 - Xcc-8004.374.1 0.81 +1.3 357,612 - Xcc-8004.374.1 0.81 -0.4 357,659 - Xcc-8004.374.1 0.84 -0.7 357,712 - Xcc-8004.374.1 0.87 +0.5 357,776 - +0.2 358,585 - Xcc-8004.375.1 0.46 +1.3 358,585 - Xcc-8004.375.1 0.46 -2.7 358,851 + Xcc-8004.375.1 0.64 -1.1 358,851 + Xcc-8004.375.1 0.64 -0.3 359,484 + +1.0 359,484 + +1.7 359,484 + +1.2 359,484 + -1.1 359,485 - +0.8 359,485 - -0.3 359,485 - +1.6 359,485 - -0.3 359,485 - -0.3 359,485 - +2.5 359,492 - +0.4 359,515 + -0.9 359,515 + -0.1 359,516 - -3.5 359,516 - -2.6 359,549 + +1.3 359,550 - +0.6 359,550 - -0.3 359,646 + Xcc-8004.376.1 0.11 +2.5 359,646 + Xcc-8004.376.1 0.11 -1.1 359,647 - Xcc-8004.376.1 0.11 -1.7 359,647 - Xcc-8004.376.1 0.11 -0.5 359,647 - Xcc-8004.376.1 0.11 +0.0 359,647 - Xcc-8004.376.1 0.11 -0.3 359,747 - Xcc-8004.376.1 0.20 +1.3 359,747 - Xcc-8004.376.1 0.20 -0.3 359,779 + Xcc-8004.376.1 0.23 +0.5 359,780 - Xcc-8004.376.1 0.23 +1.8 359,916 + Xcc-8004.376.1 0.35 +0.4 359,916 + Xcc-8004.376.1 0.35 +0.3 360,122 - Xcc-8004.376.1 0.52 -1.2 360,122 - Xcc-8004.376.1 0.52 -0.4
Or see this region's nucleotide sequence