Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3705.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3703.1 and Xcc-8004.3705.1 are separated by 90 nucleotidesXcc-8004.3705.1 and Xcc-8004.3706.1 are separated by 84 nucleotides Xcc-8004.3703.1: Xcc-8004.3703.1 - putative; ORF located using Glimmer/Genemark, at 3,587,049 to 3,587,900 Xcc-8004.3703.1 Xcc-8004.3705.1: Xcc-8004.3705.1 - Mobile element protein, at 3,587,991 to 3,588,971 Xcc-8004.3705.1 Xcc-8004.3706.1: Xcc-8004.3706.1 - FIG01210826: hypothetical protein, at 3,589,056 to 3,591,257 Xcc-8004.3706.1 Position (kb) 3587 3588 3589Strain fitness (log2 ratio) -3 -2 -1 0 1at 3587.116 kb on - strandat 3587.595 kb on + strand, within Xcc-8004.3703.1at 3587.596 kb on - strand, within Xcc-8004.3703.1at 3587.596 kb on - strand, within Xcc-8004.3703.1at 3587.874 kb on - strandat 3589.070 kb on + strandat 3589.082 kb on + strandat 3589.287 kb on - strand, within Xcc-8004.3706.1at 3589.319 kb on + strand, within Xcc-8004.3706.1at 3589.319 kb on + strand, within Xcc-8004.3706.1at 3589.319 kb on + strand, within Xcc-8004.3706.1at 3589.320 kb on - strand, within Xcc-8004.3706.1at 3589.320 kb on - strand, within Xcc-8004.3706.1at 3589.320 kb on - strand, within Xcc-8004.3706.1at 3589.329 kb on + strand, within Xcc-8004.3706.1at 3589.330 kb on - strand, within Xcc-8004.3706.1at 3589.330 kb on - strand, within Xcc-8004.3706.1at 3589.379 kb on + strand, within Xcc-8004.3706.1at 3589.379 kb on + strand, within Xcc-8004.3706.1at 3589.379 kb on + strand, within Xcc-8004.3706.1at 3589.379 kb on + strand, within Xcc-8004.3706.1at 3589.719 kb on - strand, within Xcc-8004.3706.1at 3589.719 kb on - strand, within Xcc-8004.3706.1at 3589.888 kb on - strand, within Xcc-8004.3706.1at 3589.888 kb on - strand, within Xcc-8004.3706.1at 3589.893 kb on - strand, within Xcc-8004.3706.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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3,587,116 - +0.6
3,587,595 + Xcc-8004.3703.1 0.64 -1.6
3,587,596 - Xcc-8004.3703.1 0.64 +1.1
3,587,596 - Xcc-8004.3703.1 0.64 +0.3
3,587,874 - -1.4
3,589,070 + -0.6
3,589,082 + -1.2
3,589,287 - Xcc-8004.3706.1 0.10 -1.1
3,589,319 + Xcc-8004.3706.1 0.12 +1.6
3,589,319 + Xcc-8004.3706.1 0.12 +1.2
3,589,319 + Xcc-8004.3706.1 0.12 -2.4
3,589,320 - Xcc-8004.3706.1 0.12 -0.9
3,589,320 - Xcc-8004.3706.1 0.12 +0.6
3,589,320 - Xcc-8004.3706.1 0.12 -2.6
3,589,329 + Xcc-8004.3706.1 0.12 -1.9
3,589,330 - Xcc-8004.3706.1 0.12 -1.1
3,589,330 - Xcc-8004.3706.1 0.12 -0.0
3,589,379 + Xcc-8004.3706.1 0.15 +1.4
3,589,379 + Xcc-8004.3706.1 0.15 -1.5
3,589,379 + Xcc-8004.3706.1 0.15 -2.9
3,589,379 + Xcc-8004.3706.1 0.15 -2.3
3,589,719 - Xcc-8004.3706.1 0.30 -1.3
3,589,719 - Xcc-8004.3706.1 0.30 +1.5
3,589,888 - Xcc-8004.3706.1 0.38 -0.3
3,589,888 - Xcc-8004.3706.1 0.38 +0.4
3,589,893 - Xcc-8004.3706.1 0.38 -0.1

Or see this region's nucleotide sequence