Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3683.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3680.1 and Xcc-8004.3681.1 overlap by 4 nucleotidesXcc-8004.3681.1 and Xcc-8004.3683.1 are separated by 236 nucleotidesXcc-8004.3683.1 and Xcc-8004.3684.1 are separated by 182 nucleotides Xcc-8004.3680.1: Xcc-8004.3680.1 - Sigma factor RpoE negative regulatory protein RseA, at 3,558,304 to 3,559,164 Xcc-8004.3680.1 Xcc-8004.3681.1: Xcc-8004.3681.1 - RNA polymerase sigma factor RpoE, at 3,559,161 to 3,559,781 Xcc-8004.3681.1 Xcc-8004.3683.1: Xcc-8004.3683.1 - Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 3,560,018 to 3,562,090 Xcc-8004.3683.1 Xcc-8004.3684.1: Xcc-8004.3684.1 - Cobalt-zinc-cadmium resistance protein CzcD, at 3,562,273 to 3,563,238 Xcc-8004.3684.1 Position (kb) 3560 3561 3562 3563Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3559.164 kb on + strandat 3559.164 kb on + strandat 3559.164 kb on + strandat 3559.164 kb on + strandat 3559.164 kb on + strandat 3559.164 kb on + strandat 3559.164 kb on + strandat 3559.165 kb on - strandat 3559.165 kb on - strandat 3559.212 kb on + strandat 3559.213 kb on - strandat 3559.300 kb on + strand, within Xcc-8004.3681.1at 3559.300 kb on + strand, within Xcc-8004.3681.1at 3559.300 kb on + strand, within Xcc-8004.3681.1at 3559.301 kb on - strand, within Xcc-8004.3681.1at 3559.301 kb on - strand, within Xcc-8004.3681.1at 3559.553 kb on + strand, within Xcc-8004.3681.1at 3559.553 kb on + strand, within Xcc-8004.3681.1at 3559.553 kb on + strand, within Xcc-8004.3681.1at 3559.554 kb on - strand, within Xcc-8004.3681.1at 3559.554 kb on - strand, within Xcc-8004.3681.1at 3559.554 kb on - strand, within Xcc-8004.3681.1at 3559.554 kb on - strand, within Xcc-8004.3681.1at 3559.554 kb on - strand, within Xcc-8004.3681.1at 3559.554 kb on - strand, within Xcc-8004.3681.1at 3559.554 kb on - strand, within Xcc-8004.3681.1at 3559.554 kb on - strand, within Xcc-8004.3681.1at 3559.555 kb on + strand, within Xcc-8004.3681.1at 3559.555 kb on + strand, within Xcc-8004.3681.1at 3559.555 kb on + strand, within Xcc-8004.3681.1at 3559.555 kb on + strand, within Xcc-8004.3681.1at 3559.556 kb on - strand, within Xcc-8004.3681.1at 3559.556 kb on - strand, within Xcc-8004.3681.1at 3559.556 kb on - strand, within Xcc-8004.3681.1at 3559.556 kb on - strand, within Xcc-8004.3681.1at 3559.556 kb on - strand, within Xcc-8004.3681.1at 3559.556 kb on - strand, within Xcc-8004.3681.1at 3559.594 kb on + strand, within Xcc-8004.3681.1at 3559.610 kb on + strand, within Xcc-8004.3681.1at 3559.610 kb on + strand, within Xcc-8004.3681.1at 3559.610 kb on + strand, within Xcc-8004.3681.1at 3559.610 kb on + strand, within Xcc-8004.3681.1at 3559.610 kb on + strand, within Xcc-8004.3681.1at 3559.611 kb on - strand, within Xcc-8004.3681.1at 3559.611 kb on - strand, within Xcc-8004.3681.1at 3559.611 kb on - strand, within Xcc-8004.3681.1at 3559.611 kb on - strand, within Xcc-8004.3681.1at 3559.651 kb on + strand, within Xcc-8004.3681.1at 3559.651 kb on + strand, within Xcc-8004.3681.1at 3559.652 kb on - strand, within Xcc-8004.3681.1at 3559.684 kb on + strand, within Xcc-8004.3681.1at 3559.685 kb on - strand, within Xcc-8004.3681.1at 3559.685 kb on - strand, within Xcc-8004.3681.1at 3559.766 kb on + strandat 3559.766 kb on + strandat 3559.766 kb on + strandat 3559.767 kb on - strandat 3559.943 kb on + strandat 3559.943 kb on + strandat 3559.943 kb on + strandat 3559.943 kb on + strandat 3559.943 kb on + strandat 3559.944 kb on - strandat 3559.944 kb on - strandat 3559.944 kb on - strandat 3559.944 kb on - strandat 3559.944 kb on - strandat 3559.949 kb on + strandat 3559.949 kb on + strandat 3559.950 kb on - strandat 3559.950 kb on - strandat 3559.950 kb on - strandat 3559.950 kb on - strandat 3559.950 kb on - strandat 3559.981 kb on + strandat 3559.995 kb on + strandat 3559.995 kb on + strandat 3559.995 kb on + strandat 3559.995 kb on + strandat 3559.995 kb on + strandat 3559.995 kb on + strandat 3559.995 kb on + strandat 3559.995 kb on + strandat 3559.995 kb on + strandat 3559.995 kb on + strandat 3559.996 kb on - strandat 3559.996 kb on - strandat 3559.996 kb on - strandat 3559.996 kb on - strandat 3559.996 kb on - strandat 3559.996 kb on - strandat 3559.997 kb on + strandat 3559.998 kb on - strandat 3559.998 kb on - strandat 3560.766 kb on - strand, within Xcc-8004.3683.1at 3560.766 kb on - strand, within Xcc-8004.3683.1at 3560.766 kb on - strand, within Xcc-8004.3683.1at 3560.766 kb on - strand, within Xcc-8004.3683.1at 3560.777 kb on + strand, within Xcc-8004.3683.1at 3560.777 kb on + strand, within Xcc-8004.3683.1at 3560.777 kb on + strand, within Xcc-8004.3683.1at 3560.778 kb on - strand, within Xcc-8004.3683.1at 3560.869 kb on + strand, within Xcc-8004.3683.1at 3560.870 kb on - strand, within Xcc-8004.3683.1at 3561.020 kb on + strand, within Xcc-8004.3683.1at 3561.020 kb on + strand, within Xcc-8004.3683.1at 3561.020 kb on + strand, within Xcc-8004.3683.1at 3561.021 kb on - strand, within Xcc-8004.3683.1at 3561.021 kb on - strand, within Xcc-8004.3683.1at 3561.096 kb on + strand, within Xcc-8004.3683.1at 3561.097 kb on - strand, within Xcc-8004.3683.1at 3561.097 kb on - strand, within Xcc-8004.3683.1at 3561.112 kb on - strand, within Xcc-8004.3683.1at 3561.112 kb on - strand, within Xcc-8004.3683.1at 3561.239 kb on + strand, within Xcc-8004.3683.1at 3561.277 kb on - strand, within Xcc-8004.3683.1at 3561.277 kb on - strand, within Xcc-8004.3683.1at 3561.359 kb on + strand, within Xcc-8004.3683.1at 3561.359 kb on + strand, within Xcc-8004.3683.1at 3561.359 kb on + strand, within Xcc-8004.3683.1at 3561.360 kb on - strand, within Xcc-8004.3683.1at 3561.360 kb on - strand, within Xcc-8004.3683.1at 3561.360 kb on - strand, within Xcc-8004.3683.1at 3561.524 kb on + strand, within Xcc-8004.3683.1at 3561.525 kb on - strand, within Xcc-8004.3683.1at 3561.525 kb on - strand, within Xcc-8004.3683.1at 3561.548 kb on + strand, within Xcc-8004.3683.1at 3561.758 kb on + strand, within Xcc-8004.3683.1at 3561.758 kb on + strand, within Xcc-8004.3683.1at 3561.758 kb on + strand, within Xcc-8004.3683.1at 3561.758 kb on + strand, within Xcc-8004.3683.1at 3561.758 kb on + strand, within Xcc-8004.3683.1at 3561.758 kb on + strand, within Xcc-8004.3683.1at 3561.758 kb on + strand, within Xcc-8004.3683.1at 3561.758 kb on + strand, within Xcc-8004.3683.1at 3561.758 kb on + strand, within Xcc-8004.3683.1at 3561.759 kb on - strand, within Xcc-8004.3683.1at 3561.759 kb on - strand, within Xcc-8004.3683.1at 3561.759 kb on - strand, within Xcc-8004.3683.1at 3561.759 kb on - strand, within Xcc-8004.3683.1at 3561.759 kb on - strand, within Xcc-8004.3683.1at 3561.807 kb on - strand, within Xcc-8004.3683.1at 3562.025 kb on + strandat 3562.088 kb on + strandat 3562.088 kb on + strandat 3562.088 kb on + strandat 3562.088 kb on + strandat 3562.089 kb on - strandat 3562.089 kb on - strandat 3562.089 kb on - strandat 3562.114 kb on + strandat 3562.133 kb on + strandat 3562.164 kb on + strandat 3562.164 kb on + strandat 3562.165 kb on - strandat 3562.165 kb on - strandat 3562.165 kb on - strandat 3562.244 kb on - strandat 3562.274 kb on + strandat 3562.274 kb on + strandat 3562.274 kb on + strandat 3562.275 kb on - strandat 3562.275 kb on - strandat 3562.275 kb on - strandat 3562.314 kb on + strandat 3562.314 kb on + strandat 3562.315 kb on - strandat 3562.315 kb on - strandat 3562.576 kb on + strand, within Xcc-8004.3684.1at 3562.576 kb on + strand, within Xcc-8004.3684.1at 3562.660 kb on + strand, within Xcc-8004.3684.1at 3562.660 kb on + strand, within Xcc-8004.3684.1at 3562.667 kb on - strand, within Xcc-8004.3684.1at 3562.667 kb on - strand, within Xcc-8004.3684.1at 3562.894 kb on - strand, within Xcc-8004.3684.1at 3562.894 kb on - strand, within Xcc-8004.3684.1at 3562.935 kb on + strand, within Xcc-8004.3684.1at 3562.935 kb on + strand, within Xcc-8004.3684.1at 3562.935 kb on + strand, within Xcc-8004.3684.1at 3562.935 kb on + strand, within Xcc-8004.3684.1at 3562.935 kb on + strand, within Xcc-8004.3684.1at 3562.937 kb on + strand, within Xcc-8004.3684.1at 3562.937 kb on + strand, within Xcc-8004.3684.1at 3562.937 kb on + strand, within Xcc-8004.3684.1at 3562.937 kb on + strand, within Xcc-8004.3684.1at 3562.937 kb on + strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3563.000 kb on + strand, within Xcc-8004.3684.1at 3563.001 kb on - strand, within Xcc-8004.3684.1at 3563.001 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.010 kb on + strand, within Xcc-8004.3684.1at 3563.010 kb on + strand, within Xcc-8004.3684.1at 3563.010 kb on + strand, within Xcc-8004.3684.1at 3563.011 kb on - strand, within Xcc-8004.3684.1at 3563.011 kb on - strand, within Xcc-8004.3684.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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3,559,164 + -1.4
3,559,164 + +0.4
3,559,164 + +0.9
3,559,164 + -0.0
3,559,164 + -1.1
3,559,164 + -1.5
3,559,164 + +0.7
3,559,165 - +1.5
3,559,165 - -1.5
3,559,212 + -2.9
3,559,213 - -1.1
3,559,300 + Xcc-8004.3681.1 0.22 -1.9
3,559,300 + Xcc-8004.3681.1 0.22 -0.4
3,559,300 + Xcc-8004.3681.1 0.22 +2.1
3,559,301 - Xcc-8004.3681.1 0.23 -1.9
3,559,301 - Xcc-8004.3681.1 0.23 +1.5
3,559,553 + Xcc-8004.3681.1 0.63 +0.5
3,559,553 + Xcc-8004.3681.1 0.63 +0.8
3,559,553 + Xcc-8004.3681.1 0.63 -2.9
3,559,554 - Xcc-8004.3681.1 0.63 +1.5
3,559,554 - Xcc-8004.3681.1 0.63 -0.1
3,559,554 - Xcc-8004.3681.1 0.63 +0.8
3,559,554 - Xcc-8004.3681.1 0.63 +0.6
3,559,554 - Xcc-8004.3681.1 0.63 +1.4
3,559,554 - Xcc-8004.3681.1 0.63 -0.8
3,559,554 - Xcc-8004.3681.1 0.63 -0.3
3,559,554 - Xcc-8004.3681.1 0.63 -0.3
3,559,555 + Xcc-8004.3681.1 0.63 -1.8
3,559,555 + Xcc-8004.3681.1 0.63 +0.6
3,559,555 + Xcc-8004.3681.1 0.63 +0.4
3,559,555 + Xcc-8004.3681.1 0.63 +0.2
3,559,556 - Xcc-8004.3681.1 0.64 -0.5
3,559,556 - Xcc-8004.3681.1 0.64 -2.0
3,559,556 - Xcc-8004.3681.1 0.64 +0.6
3,559,556 - Xcc-8004.3681.1 0.64 -0.4
3,559,556 - Xcc-8004.3681.1 0.64 +0.9
3,559,556 - Xcc-8004.3681.1 0.64 -0.8
3,559,594 + Xcc-8004.3681.1 0.70 -1.7
3,559,610 + Xcc-8004.3681.1 0.72 -1.4
3,559,610 + Xcc-8004.3681.1 0.72 +0.8
3,559,610 + Xcc-8004.3681.1 0.72 -1.6
3,559,610 + Xcc-8004.3681.1 0.72 -1.5
3,559,610 + Xcc-8004.3681.1 0.72 +0.2
3,559,611 - Xcc-8004.3681.1 0.72 +1.0
3,559,611 - Xcc-8004.3681.1 0.72 +0.8
3,559,611 - Xcc-8004.3681.1 0.72 +0.1
3,559,611 - Xcc-8004.3681.1 0.72 +0.2
3,559,651 + Xcc-8004.3681.1 0.79 -0.6
3,559,651 + Xcc-8004.3681.1 0.79 +0.1
3,559,652 - Xcc-8004.3681.1 0.79 -0.2
3,559,684 + Xcc-8004.3681.1 0.84 +0.6
3,559,685 - Xcc-8004.3681.1 0.84 +0.5
3,559,685 - Xcc-8004.3681.1 0.84 -0.3
3,559,766 + -1.1
3,559,766 + -0.8
3,559,766 + +0.3
3,559,767 - +1.0
3,559,943 + +0.9
3,559,943 + -0.4
3,559,943 + +0.7
3,559,943 + +0.2
3,559,943 + +0.3
3,559,944 - -1.9
3,559,944 - -0.6
3,559,944 - -1.9
3,559,944 - +1.0
3,559,944 - +2.2
3,559,949 + -1.1
3,559,949 + +1.3
3,559,950 - +0.3
3,559,950 - +0.9
3,559,950 - +0.4
3,559,950 - -1.2
3,559,950 - +0.5
3,559,981 + -0.9
3,559,995 + -0.5
3,559,995 + -0.2
3,559,995 + +0.5
3,559,995 + -0.1
3,559,995 + -1.2
3,559,995 + +0.8
3,559,995 + -0.4
3,559,995 + +1.1
3,559,995 + +0.1
3,559,995 + -1.9
3,559,996 - -0.2
3,559,996 - -0.5
3,559,996 - -1.5
3,559,996 - -2.4
3,559,996 - -0.7
3,559,996 - -0.0
3,559,997 + -0.4
3,559,998 - -2.4
3,559,998 - -0.9
3,560,766 - Xcc-8004.3683.1 0.36 -0.9
3,560,766 - Xcc-8004.3683.1 0.36 -0.3
3,560,766 - Xcc-8004.3683.1 0.36 -0.3
3,560,766 - Xcc-8004.3683.1 0.36 -1.0
3,560,777 + Xcc-8004.3683.1 0.37 -0.9
3,560,777 + Xcc-8004.3683.1 0.37 -1.7
3,560,777 + Xcc-8004.3683.1 0.37 -0.5
3,560,778 - Xcc-8004.3683.1 0.37 -2.3
3,560,869 + Xcc-8004.3683.1 0.41 -1.3
3,560,870 - Xcc-8004.3683.1 0.41 +1.0
3,561,020 + Xcc-8004.3683.1 0.48 -0.7
3,561,020 + Xcc-8004.3683.1 0.48 -2.3
3,561,020 + Xcc-8004.3683.1 0.48 +0.2
3,561,021 - Xcc-8004.3683.1 0.48 -1.6
3,561,021 - Xcc-8004.3683.1 0.48 -1.7
3,561,096 + Xcc-8004.3683.1 0.52 -0.3
3,561,097 - Xcc-8004.3683.1 0.52 +0.7
3,561,097 - Xcc-8004.3683.1 0.52 -0.7
3,561,112 - Xcc-8004.3683.1 0.53 +1.9
3,561,112 - Xcc-8004.3683.1 0.53 -0.4
3,561,239 + Xcc-8004.3683.1 0.59 -1.4
3,561,277 - Xcc-8004.3683.1 0.61 -2.3
3,561,277 - Xcc-8004.3683.1 0.61 -1.1
3,561,359 + Xcc-8004.3683.1 0.65 +0.1
3,561,359 + Xcc-8004.3683.1 0.65 +0.4
3,561,359 + Xcc-8004.3683.1 0.65 -0.4
3,561,360 - Xcc-8004.3683.1 0.65 -0.0
3,561,360 - Xcc-8004.3683.1 0.65 -0.6
3,561,360 - Xcc-8004.3683.1 0.65 -0.1
3,561,524 + Xcc-8004.3683.1 0.73 -0.7
3,561,525 - Xcc-8004.3683.1 0.73 +0.4
3,561,525 - Xcc-8004.3683.1 0.73 -0.8
3,561,548 + Xcc-8004.3683.1 0.74 -0.5
3,561,758 + Xcc-8004.3683.1 0.84 +1.2
3,561,758 + Xcc-8004.3683.1 0.84 -0.0
3,561,758 + Xcc-8004.3683.1 0.84 +1.6
3,561,758 + Xcc-8004.3683.1 0.84 -0.5
3,561,758 + Xcc-8004.3683.1 0.84 -2.6
3,561,758 + Xcc-8004.3683.1 0.84 -1.8
3,561,758 + Xcc-8004.3683.1 0.84 +0.3
3,561,758 + Xcc-8004.3683.1 0.84 -2.3
3,561,758 + Xcc-8004.3683.1 0.84 -1.6
3,561,759 - Xcc-8004.3683.1 0.84 +0.4
3,561,759 - Xcc-8004.3683.1 0.84 -1.6
3,561,759 - Xcc-8004.3683.1 0.84 -0.6
3,561,759 - Xcc-8004.3683.1 0.84 +0.2
3,561,759 - Xcc-8004.3683.1 0.84 -2.6
3,561,807 - Xcc-8004.3683.1 0.86 -1.1
3,562,025 + -0.8
3,562,088 + +0.4
3,562,088 + +0.0
3,562,088 + -1.1
3,562,088 + -0.1
3,562,089 - -1.9
3,562,089 - -0.4
3,562,089 - -0.8
3,562,114 + +0.1
3,562,133 + -0.3
3,562,164 + +0.3
3,562,164 + +0.6
3,562,165 - -1.3
3,562,165 - +0.4
3,562,165 - -0.8
3,562,244 - -1.5
3,562,274 + -0.1
3,562,274 + +1.6
3,562,274 + -0.9
3,562,275 - -3.2
3,562,275 - -1.6
3,562,275 - -0.2
3,562,314 + -1.0
3,562,314 + +0.8
3,562,315 - +0.5
3,562,315 - -0.2
3,562,576 + Xcc-8004.3684.1 0.31 -0.3
3,562,576 + Xcc-8004.3684.1 0.31 +0.2
3,562,660 + Xcc-8004.3684.1 0.40 +1.2
3,562,660 + Xcc-8004.3684.1 0.40 -0.6
3,562,667 - Xcc-8004.3684.1 0.41 -0.6
3,562,667 - Xcc-8004.3684.1 0.41 +0.0
3,562,894 - Xcc-8004.3684.1 0.64 +0.7
3,562,894 - Xcc-8004.3684.1 0.64 +1.4
3,562,935 + Xcc-8004.3684.1 0.69 -2.5
3,562,935 + Xcc-8004.3684.1 0.69 +0.4
3,562,935 + Xcc-8004.3684.1 0.69 +1.0
3,562,935 + Xcc-8004.3684.1 0.69 +1.4
3,562,935 + Xcc-8004.3684.1 0.69 +0.4
3,562,937 + Xcc-8004.3684.1 0.69 +1.0
3,562,937 + Xcc-8004.3684.1 0.69 +0.0
3,562,937 + Xcc-8004.3684.1 0.69 -0.8
3,562,937 + Xcc-8004.3684.1 0.69 +0.7
3,562,937 + Xcc-8004.3684.1 0.69 -0.3
3,562,938 - Xcc-8004.3684.1 0.69 +1.8
3,562,938 - Xcc-8004.3684.1 0.69 -2.0
3,562,938 - Xcc-8004.3684.1 0.69 -0.2
3,562,938 - Xcc-8004.3684.1 0.69 -0.2
3,562,938 - Xcc-8004.3684.1 0.69 +0.9
3,562,938 - Xcc-8004.3684.1 0.69 -2.2
3,562,938 - Xcc-8004.3684.1 0.69 +0.6
3,562,938 - Xcc-8004.3684.1 0.69 +0.1
3,562,938 - Xcc-8004.3684.1 0.69 +1.2
3,562,938 - Xcc-8004.3684.1 0.69 +0.5
3,563,000 + Xcc-8004.3684.1 0.75 -0.2
3,563,001 - Xcc-8004.3684.1 0.75 +0.1
3,563,001 - Xcc-8004.3684.1 0.75 -2.9
3,563,007 - Xcc-8004.3684.1 0.76 +0.4
3,563,007 - Xcc-8004.3684.1 0.76 -1.1
3,563,007 - Xcc-8004.3684.1 0.76 -0.0
3,563,007 - Xcc-8004.3684.1 0.76 +0.0
3,563,007 - Xcc-8004.3684.1 0.76 +0.4
3,563,007 - Xcc-8004.3684.1 0.76 -0.7
3,563,010 + Xcc-8004.3684.1 0.76 +1.2
3,563,010 + Xcc-8004.3684.1 0.76 +1.3
3,563,010 + Xcc-8004.3684.1 0.76 -0.0
3,563,011 - Xcc-8004.3684.1 0.76 -2.3
3,563,011 - Xcc-8004.3684.1 0.76 -1.4

Or see this region's nucleotide sequence