Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.351.1 and Xcc-8004.353.1 are separated by 348 nucleotides Xcc-8004.353.1 and Xcc-8004.354.1 are separated by 396 nucleotides
Xcc-8004.351.1: Xcc-8004.351.1 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 336,383 to 336,946
Xcc-8004.351.1
Xcc-8004.353.1: Xcc-8004.353.1 - FIG01210121: hypothetical protein, at 337,295 to 337,726
Xcc-8004.353.1
Xcc-8004.354.1: Xcc-8004.354.1 - macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif., at 338,123 to 340,624
Xcc-8004.354.1
Position (kb) 337
338 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 336.407 kb on + strand at 336.489 kb on - strand, within Xcc-8004.351.1 at 336.489 kb on - strand, within Xcc-8004.351.1 at 336.489 kb on - strand, within Xcc-8004.351.1 at 336.489 kb on - strand, within Xcc-8004.351.1 at 336.489 kb on - strand, within Xcc-8004.351.1 at 336.596 kb on + strand, within Xcc-8004.351.1 at 336.596 kb on + strand, within Xcc-8004.351.1 at 336.596 kb on + strand, within Xcc-8004.351.1 at 336.596 kb on + strand, within Xcc-8004.351.1 at 336.597 kb on - strand, within Xcc-8004.351.1 at 336.597 kb on - strand, within Xcc-8004.351.1 at 336.597 kb on - strand, within Xcc-8004.351.1 at 336.625 kb on + strand, within Xcc-8004.351.1 at 336.693 kb on + strand, within Xcc-8004.351.1 at 336.693 kb on + strand, within Xcc-8004.351.1 at 336.693 kb on + strand, within Xcc-8004.351.1 at 336.693 kb on + strand, within Xcc-8004.351.1 at 336.693 kb on + strand, within Xcc-8004.351.1 at 336.694 kb on - strand, within Xcc-8004.351.1 at 336.694 kb on - strand, within Xcc-8004.351.1 at 336.891 kb on + strand at 337.010 kb on - strand at 337.010 kb on - strand at 337.074 kb on - strand at 337.131 kb on - strand at 337.131 kb on - strand at 337.131 kb on - strand at 337.131 kb on - strand at 337.281 kb on + strand at 337.281 kb on + strand at 337.282 kb on - strand at 337.296 kb on + strand at 337.296 kb on + strand at 337.297 kb on - strand at 337.338 kb on + strand at 337.339 kb on - strand, within Xcc-8004.353.1 at 337.339 kb on - strand, within Xcc-8004.353.1 at 337.435 kb on - strand, within Xcc-8004.353.1 at 337.443 kb on + strand, within Xcc-8004.353.1 at 337.749 kb on - strand at 337.779 kb on + strand at 337.780 kb on - strand at 337.781 kb on + strand at 337.781 kb on + strand at 337.781 kb on + strand at 337.782 kb on - strand at 337.782 kb on - strand at 337.782 kb on - strand at 337.782 kb on - strand at 337.791 kb on + strand at 337.945 kb on + strand at 337.945 kb on + strand at 337.945 kb on + strand at 337.945 kb on + strand at 337.945 kb on + strand at 337.945 kb on + strand at 337.946 kb on - strand at 337.946 kb on - strand at 337.946 kb on - strand at 338.229 kb on + strand at 338.229 kb on + strand at 338.230 kb on - strand at 338.230 kb on - strand at 338.415 kb on + strand, within Xcc-8004.354.1 at 338.415 kb on + strand, within Xcc-8004.354.1 at 338.416 kb on - strand, within Xcc-8004.354.1 at 338.416 kb on - strand, within Xcc-8004.354.1 at 338.416 kb on - strand, within Xcc-8004.354.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 336,407 + -2.6 336,489 - Xcc-8004.351.1 0.19 -0.2 336,489 - Xcc-8004.351.1 0.19 +1.2 336,489 - Xcc-8004.351.1 0.19 +0.0 336,489 - Xcc-8004.351.1 0.19 +2.3 336,489 - Xcc-8004.351.1 0.19 -0.3 336,596 + Xcc-8004.351.1 0.38 -0.3 336,596 + Xcc-8004.351.1 0.38 +3.5 336,596 + Xcc-8004.351.1 0.38 -3.5 336,596 + Xcc-8004.351.1 0.38 +0.6 336,597 - Xcc-8004.351.1 0.38 -3.9 336,597 - Xcc-8004.351.1 0.38 -1.3 336,597 - Xcc-8004.351.1 0.38 +1.2 336,625 + Xcc-8004.351.1 0.43 +0.3 336,693 + Xcc-8004.351.1 0.55 -0.8 336,693 + Xcc-8004.351.1 0.55 +2.5 336,693 + Xcc-8004.351.1 0.55 +0.2 336,693 + Xcc-8004.351.1 0.55 -2.4 336,693 + Xcc-8004.351.1 0.55 -1.9 336,694 - Xcc-8004.351.1 0.55 -0.1 336,694 - Xcc-8004.351.1 0.55 +0.2 336,891 + +0.8 337,010 - +2.0 337,010 - -1.0 337,074 - +0.1 337,131 - +1.4 337,131 - -1.4 337,131 - -0.3 337,131 - +0.5 337,281 + -0.1 337,281 + -0.2 337,282 - -1.0 337,296 + +0.2 337,296 + +2.3 337,297 - +0.4 337,338 + -0.7 337,339 - Xcc-8004.353.1 0.10 -0.8 337,339 - Xcc-8004.353.1 0.10 -2.5 337,435 - Xcc-8004.353.1 0.32 +0.0 337,443 + Xcc-8004.353.1 0.34 -0.6 337,749 - -0.1 337,779 + -1.1 337,780 - +1.4 337,781 + +1.8 337,781 + +1.8 337,781 + +0.0 337,782 - -0.2 337,782 - +0.1 337,782 - -1.8 337,782 - -0.0 337,791 + -0.2 337,945 + +1.0 337,945 + -0.4 337,945 + +0.7 337,945 + +0.3 337,945 + +0.3 337,945 + -2.8 337,946 - +0.1 337,946 - -2.8 337,946 - -0.7 338,229 + +1.7 338,229 + -1.2 338,230 - +1.4 338,230 - -0.1 338,415 + Xcc-8004.354.1 0.12 -0.6 338,415 + Xcc-8004.354.1 0.12 -0.6 338,416 - Xcc-8004.354.1 0.12 -0.6 338,416 - Xcc-8004.354.1 0.12 +0.5 338,416 - Xcc-8004.354.1 0.12 +0.7
Or see this region's nucleotide sequence