Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.318.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.317.1 and Xcc-8004.318.1 are separated by 102 nucleotidesXcc-8004.318.1 and Xcc-8004.319.1 are separated by 303 nucleotides Xcc-8004.317.1: Xcc-8004.317.1 - Dipeptidyl anminopeptidase, at 305,800 to 307,893 Xcc-8004.317.1 Xcc-8004.318.1: Xcc-8004.318.1 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 307,996 to 310,038 Xcc-8004.318.1 Xcc-8004.319.1: Xcc-8004.319.1 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 310,342 to 311,952 Xcc-8004.319.1 Position (kb) 307 308 309 310 311Strain fitness (log2 ratio) -3 -2 -1 0 1at 307.118 kb on + strand, within Xcc-8004.317.1at 307.118 kb on + strand, within Xcc-8004.317.1at 307.118 kb on + strand, within Xcc-8004.317.1at 307.119 kb on - strand, within Xcc-8004.317.1at 307.159 kb on - strand, within Xcc-8004.317.1at 307.222 kb on + strand, within Xcc-8004.317.1at 307.222 kb on + strand, within Xcc-8004.317.1at 307.271 kb on + strand, within Xcc-8004.317.1at 307.271 kb on + strand, within Xcc-8004.317.1at 307.271 kb on + strand, within Xcc-8004.317.1at 307.272 kb on - strand, within Xcc-8004.317.1at 307.272 kb on - strand, within Xcc-8004.317.1at 307.289 kb on + strand, within Xcc-8004.317.1at 307.289 kb on + strand, within Xcc-8004.317.1at 307.289 kb on + strand, within Xcc-8004.317.1at 307.290 kb on - strand, within Xcc-8004.317.1at 307.290 kb on - strand, within Xcc-8004.317.1at 307.355 kb on + strand, within Xcc-8004.317.1at 307.355 kb on + strand, within Xcc-8004.317.1at 307.356 kb on - strand, within Xcc-8004.317.1at 307.430 kb on + strand, within Xcc-8004.317.1at 307.431 kb on - strand, within Xcc-8004.317.1at 307.431 kb on - strand, within Xcc-8004.317.1at 307.431 kb on - strand, within Xcc-8004.317.1at 307.431 kb on - strand, within Xcc-8004.317.1at 307.500 kb on - strand, within Xcc-8004.317.1at 307.538 kb on + strand, within Xcc-8004.317.1at 307.559 kb on + strand, within Xcc-8004.317.1at 307.559 kb on + strand, within Xcc-8004.317.1at 307.559 kb on + strand, within Xcc-8004.317.1at 307.559 kb on + strand, within Xcc-8004.317.1at 307.559 kb on + strand, within Xcc-8004.317.1at 307.560 kb on - strand, within Xcc-8004.317.1at 307.560 kb on - strand, within Xcc-8004.317.1at 307.560 kb on - strand, within Xcc-8004.317.1at 307.560 kb on - strand, within Xcc-8004.317.1at 307.569 kb on - strand, within Xcc-8004.317.1at 307.569 kb on - strand, within Xcc-8004.317.1at 307.571 kb on + strand, within Xcc-8004.317.1at 307.571 kb on + strand, within Xcc-8004.317.1at 307.571 kb on + strand, within Xcc-8004.317.1at 307.571 kb on + strand, within Xcc-8004.317.1at 307.571 kb on + strand, within Xcc-8004.317.1at 307.572 kb on - strand, within Xcc-8004.317.1at 307.572 kb on - strand, within Xcc-8004.317.1at 307.572 kb on - strand, within Xcc-8004.317.1at 307.685 kb on + strandat 307.685 kb on + strandat 307.685 kb on + strandat 307.686 kb on - strandat 307.943 kb on - strandat 307.943 kb on - strandat 307.943 kb on - strandat 307.943 kb on - strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.998 kb on - strandat 307.998 kb on - strandat 307.998 kb on - strandat 307.998 kb on - strandat 307.998 kb on - strandat 307.998 kb on - strandat 307.998 kb on - strandat 308.066 kb on + strandat 308.066 kb on + strandat 308.067 kb on - strandat 308.067 kb on - strandat 308.067 kb on - strandat 308.320 kb on + strand, within Xcc-8004.318.1at 308.320 kb on + strand, within Xcc-8004.318.1at 308.382 kb on - strand, within Xcc-8004.318.1at 308.382 kb on - strand, within Xcc-8004.318.1at 308.382 kb on - strand, within Xcc-8004.318.1at 308.485 kb on - strand, within Xcc-8004.318.1at 308.838 kb on - strand, within Xcc-8004.318.1at 308.840 kb on + strand, within Xcc-8004.318.1at 308.840 kb on + strand, within Xcc-8004.318.1at 308.840 kb on + strand, within Xcc-8004.318.1at 308.841 kb on - strand, within Xcc-8004.318.1at 308.841 kb on - strand, within Xcc-8004.318.1at 308.841 kb on - strand, within Xcc-8004.318.1at 308.967 kb on - strand, within Xcc-8004.318.1at 309.182 kb on + strand, within Xcc-8004.318.1at 309.182 kb on + strand, within Xcc-8004.318.1at 309.182 kb on + strand, within Xcc-8004.318.1at 309.183 kb on - strand, within Xcc-8004.318.1at 309.183 kb on - strand, within Xcc-8004.318.1at 309.380 kb on + strand, within Xcc-8004.318.1at 309.682 kb on + strand, within Xcc-8004.318.1at 309.682 kb on + strand, within Xcc-8004.318.1at 309.683 kb on - strand, within Xcc-8004.318.1at 309.683 kb on - strand, within Xcc-8004.318.1at 309.806 kb on + strand, within Xcc-8004.318.1at 309.806 kb on + strand, within Xcc-8004.318.1at 309.807 kb on - strand, within Xcc-8004.318.1at 309.835 kb on - strandat 309.891 kb on - strandat 309.983 kb on + strandat 309.984 kb on - strandat 310.245 kb on + strandat 310.245 kb on + strandat 310.245 kb on + strandat 310.245 kb on + strandat 310.246 kb on - strandat 310.246 kb on - strandat 310.472 kb on + strandat 310.473 kb on - strandat 310.475 kb on + strandat 310.649 kb on - strand, within Xcc-8004.319.1at 310.649 kb on - strand, within Xcc-8004.319.1at 310.685 kb on + strand, within Xcc-8004.319.1at 310.796 kb on + strand, within Xcc-8004.319.1at 310.796 kb on + strand, within Xcc-8004.319.1at 310.796 kb on + strand, within Xcc-8004.319.1at 310.797 kb on - strand, within Xcc-8004.319.1at 310.797 kb on - strand, within Xcc-8004.319.1at 310.800 kb on + strand, within Xcc-8004.319.1at 310.801 kb on - strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.865 kb on - strand, within Xcc-8004.319.1at 310.865 kb on - strand, within Xcc-8004.319.1at 310.865 kb on - strand, within Xcc-8004.319.1at 311.022 kb on + strand, within Xcc-8004.319.1at 311.022 kb on + strand, within Xcc-8004.319.1at 311.023 kb on - strand, within Xcc-8004.319.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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307,118 + Xcc-8004.317.1 0.63 +0.4
307,118 + Xcc-8004.317.1 0.63 -2.0
307,118 + Xcc-8004.317.1 0.63 -0.6
307,119 - Xcc-8004.317.1 0.63 -0.7
307,159 - Xcc-8004.317.1 0.65 -1.8
307,222 + Xcc-8004.317.1 0.68 +0.6
307,222 + Xcc-8004.317.1 0.68 -1.0
307,271 + Xcc-8004.317.1 0.70 +0.3
307,271 + Xcc-8004.317.1 0.70 -0.2
307,271 + Xcc-8004.317.1 0.70 -0.4
307,272 - Xcc-8004.317.1 0.70 -0.5
307,272 - Xcc-8004.317.1 0.70 -1.2
307,289 + Xcc-8004.317.1 0.71 -1.0
307,289 + Xcc-8004.317.1 0.71 -0.4
307,289 + Xcc-8004.317.1 0.71 +0.2
307,290 - Xcc-8004.317.1 0.71 -0.8
307,290 - Xcc-8004.317.1 0.71 -1.3
307,355 + Xcc-8004.317.1 0.74 -0.7
307,355 + Xcc-8004.317.1 0.74 +0.0
307,356 - Xcc-8004.317.1 0.74 -0.1
307,430 + Xcc-8004.317.1 0.78 +0.9
307,431 - Xcc-8004.317.1 0.78 +0.1
307,431 - Xcc-8004.317.1 0.78 -1.1
307,431 - Xcc-8004.317.1 0.78 -0.8
307,431 - Xcc-8004.317.1 0.78 +0.4
307,500 - Xcc-8004.317.1 0.81 -1.7
307,538 + Xcc-8004.317.1 0.83 +0.1
307,559 + Xcc-8004.317.1 0.84 -2.4
307,559 + Xcc-8004.317.1 0.84 -1.2
307,559 + Xcc-8004.317.1 0.84 +0.0
307,559 + Xcc-8004.317.1 0.84 -0.7
307,559 + Xcc-8004.317.1 0.84 -0.0
307,560 - Xcc-8004.317.1 0.84 +0.7
307,560 - Xcc-8004.317.1 0.84 +0.2
307,560 - Xcc-8004.317.1 0.84 -0.0
307,560 - Xcc-8004.317.1 0.84 -0.3
307,569 - Xcc-8004.317.1 0.84 -0.1
307,569 - Xcc-8004.317.1 0.84 +0.3
307,571 + Xcc-8004.317.1 0.85 -0.4
307,571 + Xcc-8004.317.1 0.85 +1.5
307,571 + Xcc-8004.317.1 0.85 -0.4
307,571 + Xcc-8004.317.1 0.85 +0.4
307,571 + Xcc-8004.317.1 0.85 -1.0
307,572 - Xcc-8004.317.1 0.85 +0.2
307,572 - Xcc-8004.317.1 0.85 +1.3
307,572 - Xcc-8004.317.1 0.85 +0.1
307,685 + +1.5
307,685 + -2.0
307,685 + +1.6
307,686 - +1.6
307,943 - -1.6
307,943 - -2.2
307,943 - +1.7
307,943 - +0.5
307,997 + -2.4
307,997 + -0.1
307,997 + -0.6
307,997 + +0.1
307,997 + +0.4
307,997 + +0.6
307,997 + +0.5
307,997 + -0.5
307,997 + -1.9
307,998 - -1.4
307,998 - -1.2
307,998 - -0.6
307,998 - +1.6
307,998 - -0.8
307,998 - +1.0
307,998 - -1.4
308,066 + -2.7
308,066 + -3.1
308,067 - -2.4
308,067 - -1.2
308,067 - -1.9
308,320 + Xcc-8004.318.1 0.16 -1.1
308,320 + Xcc-8004.318.1 0.16 -0.5
308,382 - Xcc-8004.318.1 0.19 +0.1
308,382 - Xcc-8004.318.1 0.19 -3.0
308,382 - Xcc-8004.318.1 0.19 -0.7
308,485 - Xcc-8004.318.1 0.24 +0.3
308,838 - Xcc-8004.318.1 0.41 -1.0
308,840 + Xcc-8004.318.1 0.41 -0.9
308,840 + Xcc-8004.318.1 0.41 +0.8
308,840 + Xcc-8004.318.1 0.41 -2.9
308,841 - Xcc-8004.318.1 0.41 -1.8
308,841 - Xcc-8004.318.1 0.41 -0.1
308,841 - Xcc-8004.318.1 0.41 -0.6
308,967 - Xcc-8004.318.1 0.48 +0.1
309,182 + Xcc-8004.318.1 0.58 -3.1
309,182 + Xcc-8004.318.1 0.58 -0.9
309,182 + Xcc-8004.318.1 0.58 -1.1
309,183 - Xcc-8004.318.1 0.58 -1.9
309,183 - Xcc-8004.318.1 0.58 -0.5
309,380 + Xcc-8004.318.1 0.68 -2.3
309,682 + Xcc-8004.318.1 0.83 -1.4
309,682 + Xcc-8004.318.1 0.83 -0.2
309,683 - Xcc-8004.318.1 0.83 -0.7
309,683 - Xcc-8004.318.1 0.83 -1.0
309,806 + Xcc-8004.318.1 0.89 -0.9
309,806 + Xcc-8004.318.1 0.89 -1.0
309,807 - Xcc-8004.318.1 0.89 +0.2
309,835 - -2.6
309,891 - -1.5
309,983 + -0.2
309,984 - -2.5
310,245 + -0.8
310,245 + -0.4
310,245 + -1.0
310,245 + +1.2
310,246 - -0.0
310,246 - -0.6
310,472 + -3.7
310,473 - -0.9
310,475 + -1.1
310,649 - Xcc-8004.319.1 0.19 -1.4
310,649 - Xcc-8004.319.1 0.19 -0.6
310,685 + Xcc-8004.319.1 0.21 -2.0
310,796 + Xcc-8004.319.1 0.28 -0.8
310,796 + Xcc-8004.319.1 0.28 -1.1
310,796 + Xcc-8004.319.1 0.28 +1.0
310,797 - Xcc-8004.319.1 0.28 -1.5
310,797 - Xcc-8004.319.1 0.28 -2.4
310,800 + Xcc-8004.319.1 0.28 -0.9
310,801 - Xcc-8004.319.1 0.28 +0.7
310,864 + Xcc-8004.319.1 0.32 -1.9
310,864 + Xcc-8004.319.1 0.32 -1.9
310,864 + Xcc-8004.319.1 0.32 -0.9
310,864 + Xcc-8004.319.1 0.32 -1.6
310,864 + Xcc-8004.319.1 0.32 -1.6
310,864 + Xcc-8004.319.1 0.32 -0.4
310,865 - Xcc-8004.319.1 0.32 -0.0
310,865 - Xcc-8004.319.1 0.32 -2.0
310,865 - Xcc-8004.319.1 0.32 +0.1
311,022 + Xcc-8004.319.1 0.42 -2.8
311,022 + Xcc-8004.319.1 0.42 -3.2
311,023 - Xcc-8004.319.1 0.42 +0.5

Or see this region's nucleotide sequence