Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2715.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2714.1 and Xcc-8004.2715.1 are separated by 4 nucleotidesXcc-8004.2715.1 and Xcc-8004.2716.1 are separated by 84 nucleotides Xcc-8004.2714.1: Xcc-8004.2714.1 - Nitrate ABC transporter, nitrate-binding protein, at 2,627,379 to 2,628,449 Xcc-8004.2714.1 Xcc-8004.2715.1: Xcc-8004.2715.1 - Response regulator NasT, at 2,628,454 to 2,629,026 Xcc-8004.2715.1 Xcc-8004.2716.1: Xcc-8004.2716.1 - Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4), at 2,629,111 to 2,630,109 Xcc-8004.2716.1 Position (kb) 2628 2629 2630Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2627.464 kb on + strandat 2627.464 kb on + strandat 2627.465 kb on - strandat 2627.686 kb on + strand, within Xcc-8004.2714.1at 2627.686 kb on + strand, within Xcc-8004.2714.1at 2627.686 kb on + strand, within Xcc-8004.2714.1at 2627.686 kb on + strand, within Xcc-8004.2714.1at 2627.687 kb on - strand, within Xcc-8004.2714.1at 2627.687 kb on - strand, within Xcc-8004.2714.1at 2627.988 kb on + strand, within Xcc-8004.2714.1at 2627.988 kb on + strand, within Xcc-8004.2714.1at 2627.988 kb on + strand, within Xcc-8004.2714.1at 2627.988 kb on + strand, within Xcc-8004.2714.1at 2627.988 kb on + strand, within Xcc-8004.2714.1at 2627.988 kb on + strand, within Xcc-8004.2714.1at 2627.988 kb on + strand, within Xcc-8004.2714.1at 2627.988 kb on + strand, within Xcc-8004.2714.1at 2627.989 kb on - strand, within Xcc-8004.2714.1at 2627.989 kb on - strand, within Xcc-8004.2714.1at 2627.989 kb on - strand, within Xcc-8004.2714.1at 2627.989 kb on - strand, within Xcc-8004.2714.1at 2627.989 kb on - strand, within Xcc-8004.2714.1at 2627.989 kb on - strand, within Xcc-8004.2714.1at 2628.034 kb on + strand, within Xcc-8004.2714.1at 2628.034 kb on + strand, within Xcc-8004.2714.1at 2628.034 kb on + strand, within Xcc-8004.2714.1at 2628.034 kb on + strand, within Xcc-8004.2714.1at 2628.034 kb on + strand, within Xcc-8004.2714.1at 2628.035 kb on - strand, within Xcc-8004.2714.1at 2628.037 kb on + strand, within Xcc-8004.2714.1at 2628.037 kb on + strand, within Xcc-8004.2714.1at 2628.037 kb on + strand, within Xcc-8004.2714.1at 2628.037 kb on + strand, within Xcc-8004.2714.1at 2628.038 kb on - strand, within Xcc-8004.2714.1at 2628.038 kb on - strand, within Xcc-8004.2714.1at 2628.038 kb on - strand, within Xcc-8004.2714.1at 2628.038 kb on - strand, within Xcc-8004.2714.1at 2628.038 kb on - strand, within Xcc-8004.2714.1at 2628.244 kb on + strand, within Xcc-8004.2714.1at 2628.244 kb on + strand, within Xcc-8004.2714.1at 2628.245 kb on - strand, within Xcc-8004.2714.1at 2628.245 kb on - strand, within Xcc-8004.2714.1at 2628.245 kb on - strand, within Xcc-8004.2714.1at 2628.349 kb on + strandat 2628.350 kb on - strandat 2628.410 kb on + strandat 2628.410 kb on + strandat 2628.411 kb on - strandat 2628.411 kb on - strandat 2628.411 kb on - strandat 2628.411 kb on - strandat 2628.412 kb on + strandat 2628.412 kb on + strandat 2628.412 kb on + strandat 2628.412 kb on + strandat 2628.412 kb on + strandat 2628.412 kb on + strandat 2628.412 kb on + strandat 2628.413 kb on - strandat 2628.413 kb on - strandat 2628.413 kb on - strandat 2628.413 kb on - strandat 2628.413 kb on - strandat 2628.413 kb on - strandat 2628.413 kb on - strandat 2628.451 kb on + strandat 2628.451 kb on + strandat 2628.451 kb on + strandat 2628.451 kb on + strandat 2628.451 kb on + strandat 2628.451 kb on + strandat 2628.452 kb on - strandat 2628.452 kb on - strandat 2628.452 kb on - strandat 2628.452 kb on - strandat 2628.452 kb on - strandat 2628.452 kb on - strandat 2628.452 kb on - strandat 2628.452 kb on - strandat 2628.545 kb on + strand, within Xcc-8004.2715.1at 2628.545 kb on + strand, within Xcc-8004.2715.1at 2628.545 kb on + strand, within Xcc-8004.2715.1at 2628.546 kb on - strand, within Xcc-8004.2715.1at 2628.734 kb on + strand, within Xcc-8004.2715.1at 2628.735 kb on - strand, within Xcc-8004.2715.1at 2628.735 kb on - strand, within Xcc-8004.2715.1at 2628.951 kb on + strand, within Xcc-8004.2715.1at 2628.951 kb on + strand, within Xcc-8004.2715.1at 2628.952 kb on - strand, within Xcc-8004.2715.1at 2628.952 kb on - strand, within Xcc-8004.2715.1at 2628.954 kb on - strand, within Xcc-8004.2715.1at 2628.954 kb on - strand, within Xcc-8004.2715.1at 2629.193 kb on + strandat 2629.193 kb on + strandat 2629.193 kb on + strandat 2629.193 kb on + strandat 2629.194 kb on - strandat 2629.194 kb on - strandat 2629.194 kb on - strandat 2629.221 kb on + strand, within Xcc-8004.2716.1at 2629.232 kb on - strand, within Xcc-8004.2716.1at 2629.441 kb on + strand, within Xcc-8004.2716.1at 2629.441 kb on + strand, within Xcc-8004.2716.1at 2629.441 kb on + strand, within Xcc-8004.2716.1at 2629.441 kb on + strand, within Xcc-8004.2716.1at 2629.441 kb on + strand, within Xcc-8004.2716.1at 2629.442 kb on - strand, within Xcc-8004.2716.1at 2629.442 kb on - strand, within Xcc-8004.2716.1at 2629.442 kb on - strand, within Xcc-8004.2716.1at 2629.442 kb on - strand, within Xcc-8004.2716.1at 2629.442 kb on - strand, within Xcc-8004.2716.1at 2629.592 kb on - strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.844 kb on + strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.845 kb on - strand, within Xcc-8004.2716.1at 2629.914 kb on - strand, within Xcc-8004.2716.1at 2629.928 kb on + strand, within Xcc-8004.2716.1at 2629.928 kb on + strand, within Xcc-8004.2716.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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2,627,464 + -1.6
2,627,464 + -1.5
2,627,465 - -1.8
2,627,686 + Xcc-8004.2714.1 0.29 +0.6
2,627,686 + Xcc-8004.2714.1 0.29 +0.1
2,627,686 + Xcc-8004.2714.1 0.29 -1.8
2,627,686 + Xcc-8004.2714.1 0.29 -2.1
2,627,687 - Xcc-8004.2714.1 0.29 -1.6
2,627,687 - Xcc-8004.2714.1 0.29 +1.3
2,627,988 + Xcc-8004.2714.1 0.57 -0.7
2,627,988 + Xcc-8004.2714.1 0.57 +1.2
2,627,988 + Xcc-8004.2714.1 0.57 -0.2
2,627,988 + Xcc-8004.2714.1 0.57 -0.0
2,627,988 + Xcc-8004.2714.1 0.57 +1.0
2,627,988 + Xcc-8004.2714.1 0.57 +0.1
2,627,988 + Xcc-8004.2714.1 0.57 +0.1
2,627,988 + Xcc-8004.2714.1 0.57 +0.4
2,627,989 - Xcc-8004.2714.1 0.57 -0.7
2,627,989 - Xcc-8004.2714.1 0.57 -0.3
2,627,989 - Xcc-8004.2714.1 0.57 +1.3
2,627,989 - Xcc-8004.2714.1 0.57 -2.4
2,627,989 - Xcc-8004.2714.1 0.57 +0.4
2,627,989 - Xcc-8004.2714.1 0.57 +0.0
2,628,034 + Xcc-8004.2714.1 0.61 -1.9
2,628,034 + Xcc-8004.2714.1 0.61 -0.2
2,628,034 + Xcc-8004.2714.1 0.61 +0.4
2,628,034 + Xcc-8004.2714.1 0.61 +1.8
2,628,034 + Xcc-8004.2714.1 0.61 +0.5
2,628,035 - Xcc-8004.2714.1 0.61 -1.9
2,628,037 + Xcc-8004.2714.1 0.61 -0.4
2,628,037 + Xcc-8004.2714.1 0.61 -1.4
2,628,037 + Xcc-8004.2714.1 0.61 -0.3
2,628,037 + Xcc-8004.2714.1 0.61 +0.1
2,628,038 - Xcc-8004.2714.1 0.62 -0.7
2,628,038 - Xcc-8004.2714.1 0.62 -0.9
2,628,038 - Xcc-8004.2714.1 0.62 +0.5
2,628,038 - Xcc-8004.2714.1 0.62 +0.1
2,628,038 - Xcc-8004.2714.1 0.62 +0.9
2,628,244 + Xcc-8004.2714.1 0.81 +0.2
2,628,244 + Xcc-8004.2714.1 0.81 -2.2
2,628,245 - Xcc-8004.2714.1 0.81 -0.9
2,628,245 - Xcc-8004.2714.1 0.81 +1.0
2,628,245 - Xcc-8004.2714.1 0.81 +0.2
2,628,349 + +0.6
2,628,350 - +0.6
2,628,410 + -1.4
2,628,410 + -0.3
2,628,411 - -0.9
2,628,411 - -0.3
2,628,411 - +0.8
2,628,411 - -1.8
2,628,412 + -0.6
2,628,412 + +0.6
2,628,412 + +1.8
2,628,412 + -0.3
2,628,412 + -0.2
2,628,412 + -1.5
2,628,412 + +0.1
2,628,413 - -0.3
2,628,413 - +0.3
2,628,413 - -0.3
2,628,413 - -1.0
2,628,413 - +1.8
2,628,413 - -0.7
2,628,413 - -1.3
2,628,451 + -0.2
2,628,451 + -0.6
2,628,451 + +0.1
2,628,451 + -2.6
2,628,451 + -0.5
2,628,451 + +0.3
2,628,452 - -1.0
2,628,452 - +0.8
2,628,452 - +0.7
2,628,452 - -0.9
2,628,452 - -0.9
2,628,452 - -0.9
2,628,452 - +0.0
2,628,452 - -1.7
2,628,545 + Xcc-8004.2715.1 0.16 -0.3
2,628,545 + Xcc-8004.2715.1 0.16 +0.7
2,628,545 + Xcc-8004.2715.1 0.16 -3.4
2,628,546 - Xcc-8004.2715.1 0.16 -2.0
2,628,734 + Xcc-8004.2715.1 0.49 +1.5
2,628,735 - Xcc-8004.2715.1 0.49 +1.2
2,628,735 - Xcc-8004.2715.1 0.49 +0.7
2,628,951 + Xcc-8004.2715.1 0.87 +1.0
2,628,951 + Xcc-8004.2715.1 0.87 +0.8
2,628,952 - Xcc-8004.2715.1 0.87 +1.3
2,628,952 - Xcc-8004.2715.1 0.87 +1.9
2,628,954 - Xcc-8004.2715.1 0.87 -0.0
2,628,954 - Xcc-8004.2715.1 0.87 -1.8
2,629,193 + +0.0
2,629,193 + +0.4
2,629,193 + +1.4
2,629,193 + -0.7
2,629,194 - +0.5
2,629,194 - -0.2
2,629,194 - -1.0
2,629,221 + Xcc-8004.2716.1 0.11 -1.4
2,629,232 - Xcc-8004.2716.1 0.12 -2.6
2,629,441 + Xcc-8004.2716.1 0.33 +0.8
2,629,441 + Xcc-8004.2716.1 0.33 +0.3
2,629,441 + Xcc-8004.2716.1 0.33 +0.4
2,629,441 + Xcc-8004.2716.1 0.33 -1.5
2,629,441 + Xcc-8004.2716.1 0.33 -1.0
2,629,442 - Xcc-8004.2716.1 0.33 -0.9
2,629,442 - Xcc-8004.2716.1 0.33 -0.5
2,629,442 - Xcc-8004.2716.1 0.33 -0.3
2,629,442 - Xcc-8004.2716.1 0.33 +0.7
2,629,442 - Xcc-8004.2716.1 0.33 -0.8
2,629,592 - Xcc-8004.2716.1 0.48 -0.3
2,629,844 + Xcc-8004.2716.1 0.73 -0.8
2,629,844 + Xcc-8004.2716.1 0.73 -1.3
2,629,844 + Xcc-8004.2716.1 0.73 -0.8
2,629,844 + Xcc-8004.2716.1 0.73 -0.5
2,629,844 + Xcc-8004.2716.1 0.73 +1.7
2,629,844 + Xcc-8004.2716.1 0.73 -0.1
2,629,844 + Xcc-8004.2716.1 0.73 -1.0
2,629,844 + Xcc-8004.2716.1 0.73 +0.3
2,629,844 + Xcc-8004.2716.1 0.73 -0.5
2,629,844 + Xcc-8004.2716.1 0.73 +0.4
2,629,844 + Xcc-8004.2716.1 0.73 +0.7
2,629,844 + Xcc-8004.2716.1 0.73 +1.2
2,629,844 + Xcc-8004.2716.1 0.73 +1.6
2,629,845 - Xcc-8004.2716.1 0.73 +0.8
2,629,845 - Xcc-8004.2716.1 0.73 +0.7
2,629,845 - Xcc-8004.2716.1 0.73 +1.1
2,629,845 - Xcc-8004.2716.1 0.73 -0.6
2,629,845 - Xcc-8004.2716.1 0.73 +0.5
2,629,845 - Xcc-8004.2716.1 0.73 -0.5
2,629,845 - Xcc-8004.2716.1 0.73 +0.8
2,629,845 - Xcc-8004.2716.1 0.73 +0.4
2,629,914 - Xcc-8004.2716.1 0.80 -2.6
2,629,928 + Xcc-8004.2716.1 0.82 -0.8
2,629,928 + Xcc-8004.2716.1 0.82 +2.5

Or see this region's nucleotide sequence