Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2418.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
2,359,352	+		Xcc-8004.2416.1	0.50	+1.2
2,359,352	+		Xcc-8004.2416.1	0.50	-1.9
2,359,353	-		Xcc-8004.2416.1	0.50	-1.5
2,359,353	-		Xcc-8004.2416.1	0.50	-0.1
2,359,353	-		Xcc-8004.2416.1	0.50	+0.5
2,359,353	-		Xcc-8004.2416.1	0.50	+1.5
2,359,353	-		Xcc-8004.2416.1	0.50	-0.7
2,359,353	-		Xcc-8004.2416.1	0.50	+0.1
2,359,388	+		Xcc-8004.2416.1	0.57	+0.7
2,359,388	+		Xcc-8004.2416.1	0.57	+0.6
2,359,388	+		Xcc-8004.2416.1	0.57	+0.3
2,359,388	+		Xcc-8004.2416.1	0.57	-0.3
2,359,388	+		Xcc-8004.2416.1	0.57	-0.7
2,359,388	+		Xcc-8004.2416.1	0.57	+0.5
2,359,388	+		Xcc-8004.2416.1	0.57	-0.7
2,359,388	+		Xcc-8004.2416.1	0.57	-0.6
2,359,388	+		Xcc-8004.2416.1	0.57	+0.5
2,359,389	-		Xcc-8004.2416.1	0.58	-0.0
2,359,389	-		Xcc-8004.2416.1	0.58	+1.6
2,359,389	-		Xcc-8004.2416.1	0.58	+1.2
2,359,389	-		Xcc-8004.2416.1	0.58	+1.2
2,359,389	-		Xcc-8004.2416.1	0.58	-0.3
2,359,389	-		Xcc-8004.2416.1	0.58	+0.1
2,359,389	-		Xcc-8004.2416.1	0.58	-0.4
2,359,389	-		Xcc-8004.2416.1	0.58	-1.2
2,359,389	-		Xcc-8004.2416.1	0.58	-0.4
2,359,468	+		Xcc-8004.2416.1	0.74	-0.4
2,359,468	+		Xcc-8004.2416.1	0.74	+0.6
2,359,468	+		Xcc-8004.2416.1	0.74	-2.4
2,359,468	+		Xcc-8004.2416.1	0.74	+2.2
2,359,468	+		Xcc-8004.2416.1	0.74	-1.3
2,359,468	+		Xcc-8004.2416.1	0.74	-0.7
2,359,468	+		Xcc-8004.2416.1	0.74	-0.5
2,359,468	+		Xcc-8004.2416.1	0.74	+0.4
2,359,468	+		Xcc-8004.2416.1	0.74	-0.3
2,359,468	+		Xcc-8004.2416.1	0.74	+0.8
2,359,468	+		Xcc-8004.2416.1	0.74	+0.9
2,359,468	+		Xcc-8004.2416.1	0.74	-1.3
2,359,469	-		Xcc-8004.2416.1	0.75	+0.1
2,359,469	-		Xcc-8004.2416.1	0.75	-0.8
2,359,469	-		Xcc-8004.2416.1	0.75	+0.3
2,359,469	-		Xcc-8004.2416.1	0.75	-0.1
2,359,469	-		Xcc-8004.2416.1	0.75	+0.3
2,359,469	-		Xcc-8004.2416.1	0.75	+0.7
2,359,469	-		Xcc-8004.2416.1	0.75	-1.0
2,359,469	-		Xcc-8004.2416.1	0.75	+1.3
2,359,469	-		Xcc-8004.2416.1	0.75	-1.2
2,359,469	-		Xcc-8004.2416.1	0.75	-0.5
2,359,469	-		Xcc-8004.2416.1	0.75	-1.8
2,359,469	-		Xcc-8004.2416.1	0.75	+0.1
2,359,493	+		Xcc-8004.2416.1	0.80	+0.0
2,359,493	+		Xcc-8004.2416.1	0.80	-1.6
2,359,493	+		Xcc-8004.2416.1	0.80	-0.9
2,359,493	+		Xcc-8004.2416.1	0.80	-1.5
2,359,493	+		Xcc-8004.2416.1	0.80	-1.8
2,359,494	-		Xcc-8004.2416.1	0.80	-0.4
2,359,494	-		Xcc-8004.2416.1	0.80	-0.3
2,359,494	-		Xcc-8004.2416.1	0.80	+0.8
2,359,544	+				-0.2
2,359,544	+				+0.3
2,359,544	+				+0.3
2,359,544	+				+0.5
2,359,544	+				+0.2
2,359,544	+				+0.4
2,359,544	+				+1.9
2,359,544	+				+0.6
2,359,544	+				+0.7
2,359,545	-				+0.5
2,359,545	-				-0.7
2,359,545	-				+0.6
2,359,545	-				+1.8
2,359,545	-				+0.7
2,359,616	+				+0.5
2,359,616	+				-0.8
2,359,616	+				+0.2
2,359,616	+				-1.0
2,359,616	+				+1.2
2,359,616	+				+0.4
2,359,616	+				+1.0
2,359,616	+				-0.5
2,359,617	-				+0.5
2,359,617	-				+0.1
2,359,617	-				+0.1
2,359,617	-				-0.5
2,359,617	-				-0.8
2,359,617	-				-2.6
2,359,617	-				-0.7
2,359,617	-				-0.0
2,359,617	-				-1.2
2,359,617	-				-0.8
2,359,617	-				-0.6
2,359,617	-				-0.5
2,359,655	+				-0.3
2,359,655	+				-1.1
2,359,655	+				+0.3
2,359,708	+		Xcc-8004.2417.1	0.12	+0.9
2,359,708	+		Xcc-8004.2417.1	0.12	-0.7
2,359,708	+		Xcc-8004.2417.1	0.12	+1.0
2,359,708	+		Xcc-8004.2417.1	0.12	+0.9
2,359,708	+		Xcc-8004.2417.1	0.12	+2.9
2,359,708	+		Xcc-8004.2417.1	0.12	-0.3
2,359,709	-		Xcc-8004.2417.1	0.13	-1.3
2,359,709	-		Xcc-8004.2417.1	0.13	-2.0
2,359,709	-		Xcc-8004.2417.1	0.13	-1.2
2,359,709	-		Xcc-8004.2417.1	0.13	-1.6
2,359,709	-		Xcc-8004.2417.1	0.13	-0.4
2,359,709	-		Xcc-8004.2417.1	0.13	-0.0
2,359,709	-		Xcc-8004.2417.1	0.13	+1.2
2,359,709	-		Xcc-8004.2417.1	0.13	-1.5
2,359,758	+		Xcc-8004.2417.1	0.23	-1.5
2,359,758	+		Xcc-8004.2417.1	0.23	+0.6
2,359,758	+		Xcc-8004.2417.1	0.23	+1.3
2,359,758	+		Xcc-8004.2417.1	0.23	+1.1
2,359,759	-		Xcc-8004.2417.1	0.23	-1.2
2,359,759	-		Xcc-8004.2417.1	0.23	+1.8
2,360,121	+				-1.1
2,360,122	-				-0.3
2,360,122	-				-1.0
2,360,185	+				+0.8
2,360,186	-				-0.7
2,360,394	+				+0.7
2,360,395	-				+1.1
2,360,395	-				-1.8
2,360,395	-				+1.3
2,360,395	-				+1.0
2,360,444	+		Xcc-8004.2418.1	0.13	+2.9
2,360,445	-		Xcc-8004.2418.1	0.13	+0.4
2,360,445	-		Xcc-8004.2418.1	0.13	-0.1
2,360,567	+		Xcc-8004.2418.1	0.29	-0.2
2,360,567	+		Xcc-8004.2418.1	0.29	-0.9
2,360,567	+		Xcc-8004.2418.1	0.29	-1.5
2,360,567	+		Xcc-8004.2418.1	0.29	-1.7
2,360,567	+		Xcc-8004.2418.1	0.29	-1.7
2,360,567	+		Xcc-8004.2418.1	0.29	-0.8
2,360,567	+		Xcc-8004.2418.1	0.29	-0.5
2,360,567	+		Xcc-8004.2418.1	0.29	-0.2
2,360,567	+		Xcc-8004.2418.1	0.29	+0.9
2,360,567	+		Xcc-8004.2418.1	0.29	+1.4
2,360,567	+		Xcc-8004.2418.1	0.29	-1.3
2,360,567	+		Xcc-8004.2418.1	0.29	+0.3
2,360,567	+		Xcc-8004.2418.1	0.29	-0.4
2,360,567	+		Xcc-8004.2418.1	0.29	+0.1
2,360,567	+		Xcc-8004.2418.1	0.29	-0.7
2,360,567	+		Xcc-8004.2418.1	0.29	-1.0
2,360,567	+		Xcc-8004.2418.1	0.29	-1.0
2,360,567	+		Xcc-8004.2418.1	0.29	+2.4
2,360,567	+		Xcc-8004.2418.1	0.29	-1.7
2,360,567	+		Xcc-8004.2418.1	0.29	-0.5
2,360,567	+		Xcc-8004.2418.1	0.29	-0.0
2,360,567	+		Xcc-8004.2418.1	0.29	-0.8
2,360,568	-		Xcc-8004.2418.1	0.30	-1.2
2,360,568	-		Xcc-8004.2418.1	0.30	-0.1
2,360,568	-		Xcc-8004.2418.1	0.30	-0.1
2,360,568	-		Xcc-8004.2418.1	0.30	+0.2
2,360,568	-		Xcc-8004.2418.1	0.30	-0.7
2,360,568	-		Xcc-8004.2418.1	0.30	-1.7
2,360,568	-		Xcc-8004.2418.1	0.30	+0.5
2,360,568	-		Xcc-8004.2418.1	0.30	-0.1
2,360,568	-		Xcc-8004.2418.1	0.30	-1.0
2,360,568	-		Xcc-8004.2418.1	0.30	-0.1
2,360,568	-		Xcc-8004.2418.1	0.30	+0.7
2,360,568	-		Xcc-8004.2418.1	0.30	+0.1
2,360,568	-		Xcc-8004.2418.1	0.30	-0.7
2,360,568	-		Xcc-8004.2418.1	0.30	-0.8
2,360,568	-		Xcc-8004.2418.1	0.30	+0.9
2,360,663	+		Xcc-8004.2418.1	0.42	-0.2
2,360,663	+		Xcc-8004.2418.1	0.42	+0.4
2,360,663	+		Xcc-8004.2418.1	0.42	-1.1
2,360,663	+		Xcc-8004.2418.1	0.42	+0.8
2,360,664	-		Xcc-8004.2418.1	0.42	-0.1
2,360,664	-		Xcc-8004.2418.1	0.42	+1.5
2,360,664	-		Xcc-8004.2418.1	0.42	-0.5
2,360,664	-		Xcc-8004.2418.1	0.42	+0.8
2,360,675	+		Xcc-8004.2418.1	0.44	+0.3
2,360,675	+		Xcc-8004.2418.1	0.44	-1.1
2,360,675	+		Xcc-8004.2418.1	0.44	-1.3
2,360,675	+		Xcc-8004.2418.1	0.44	-0.6
2,360,676	-		Xcc-8004.2418.1	0.44	-0.3
2,360,676	-		Xcc-8004.2418.1	0.44	-1.9
2,360,676	-		Xcc-8004.2418.1	0.44	+0.3
2,360,676	-		Xcc-8004.2418.1	0.44	-1.6
2,360,676	-		Xcc-8004.2418.1	0.44	-2.3
2,360,676	-		Xcc-8004.2418.1	0.44	-0.5
2,360,676	-		Xcc-8004.2418.1	0.44	+0.9
2,360,935	+		Xcc-8004.2418.1	0.78	-1.7
2,360,936	-		Xcc-8004.2418.1	0.78	+0.8
2,360,936	-		Xcc-8004.2418.1	0.78	-1.3
2,361,516	+		Xcc-8004.2419.1	0.46	-1.7
2,361,516	+		Xcc-8004.2419.1	0.46	-0.1
2,361,516	+		Xcc-8004.2419.1	0.46	-0.1
2,361,516	+		Xcc-8004.2419.1	0.46	+0.8
2,361,517	-		Xcc-8004.2419.1	0.47	+0.4
2,361,517	-		Xcc-8004.2419.1	0.47	-1.7
2,361,561	+		Xcc-8004.2419.1	0.54	-0.5
2,361,561	+		Xcc-8004.2419.1	0.54	+1.0
2,361,561	+		Xcc-8004.2419.1	0.54	+2.2
2,361,562	-		Xcc-8004.2419.1	0.54	+0.4
2,361,597	+		Xcc-8004.2419.1	0.60	+0.9
2,361,597	+		Xcc-8004.2419.1	0.60	+0.7
2,361,597	+		Xcc-8004.2419.1	0.60	-0.0
2,361,597	+		Xcc-8004.2419.1	0.60	-1.6
2,361,598	-		Xcc-8004.2419.1	0.60	-0.5
2,361,598	-		Xcc-8004.2419.1	0.60	-1.7
2,361,598	-		Xcc-8004.2419.1	0.60	-0.4
2,361,598	-		Xcc-8004.2419.1	0.60	+1.2
2,361,598	-		Xcc-8004.2419.1	0.60	-1.1
2,361,645	+		Xcc-8004.2419.1	0.67	-0.8
2,361,646	-		Xcc-8004.2419.1	0.67	+1.2
2,361,720	-		Xcc-8004.2419.1	0.80	-0.5
2,361,720	-		Xcc-8004.2419.1	0.80	-1.6
2,361,720	-		Xcc-8004.2419.1	0.80	-1.7
2,361,869	+				-0.2
2,361,870	-				+0.7
2,361,870	-				-1.4
2,361,870	-				-0.0
2,361,956	+				+0.4
2,361,956	+				+0.7
2,361,957	-				+0.5
2,361,957	-				+0.1
2,361,957	-				-1.2