Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.186.1 and Xcc-8004.187.1 are separated by 72 nucleotides Xcc-8004.187.1 and Xcc-8004.188.1 overlap by 101 nucleotides Xcc-8004.188.1 and Xcc-8004.189.1 overlap by 4 nucleotides Xcc-8004.189.1 and Xcc-8004.192.1 are separated by 381 nucleotides
Xcc-8004.186.1: Xcc-8004.186.1 - 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18), at 181,494 to 183,689
Xcc-8004.186.1
Xcc-8004.187.1: Xcc-8004.187.1 - Mobile element protein, at 183,762 to 184,280
Xcc-8004.187.1
Xcc-8004.188.1: Xcc-8004.188.1 - Mobile element protein, at 184,180 to 184,344
Xcc-8004.188.1
Xcc-8004.189.1: Xcc-8004.189.1 - Mobile element protein, at 184,341 to 184,532
Xcc-8004.189.1
Xcc-8004.192.1: Xcc-8004.192.1 - putative; ORF located using Glimmer/Genemark, at 184,914 to 185,408
Xcc-8004.192.1
Position (kb) 184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 183.340 kb on - strand, within Xcc-8004.186.1 at 183.474 kb on + strand at 183.474 kb on + strand at 183.474 kb on + strand at 183.474 kb on + strand at 183.561 kb on + strand at 183.561 kb on + strand at 183.738 kb on + strand at 183.739 kb on - strand at 183.739 kb on - strand at 183.739 kb on - strand at 183.753 kb on - strand at 183.753 kb on - strand at 183.778 kb on - strand at 183.778 kb on - strand at 183.778 kb on - strand at 183.778 kb on - strand at 183.781 kb on - strand at 184.354 kb on + strand at 184.355 kb on - strand at 184.355 kb on - strand at 184.427 kb on - strand, within Xcc-8004.189.1 at 184.603 kb on + strand at 184.616 kb on - strand at 184.622 kb on + strand at 184.623 kb on - strand at 184.623 kb on - strand at 184.670 kb on + strand at 184.670 kb on + strand at 184.671 kb on - strand at 184.671 kb on - strand at 184.671 kb on - strand at 184.678 kb on + strand at 184.678 kb on + strand at 184.678 kb on + strand at 184.678 kb on + strand at 184.679 kb on - strand at 184.890 kb on + strand at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.074 kb on + strand, within Xcc-8004.192.1 at 185.075 kb on - strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.133 kb on + strand, within Xcc-8004.192.1 at 185.170 kb on - strand, within Xcc-8004.192.1 at 185.170 kb on - strand, within Xcc-8004.192.1 at 185.288 kb on + strand, within Xcc-8004.192.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 183,340 - Xcc-8004.186.1 0.84 -1.2 183,474 + +0.5 183,474 + +0.2 183,474 + -0.2 183,474 + -2.3 183,561 + -0.6 183,561 + +0.1 183,738 + -0.0 183,739 - -0.5 183,739 - +1.2 183,739 - -0.3 183,753 - -1.5 183,753 - -0.3 183,778 - +0.8 183,778 - -2.4 183,778 - +0.7 183,778 - -1.5 183,781 - +1.1 184,354 + -2.0 184,355 - -0.0 184,355 - +0.5 184,427 - Xcc-8004.189.1 0.45 -0.5 184,603 + +1.5 184,616 - -0.7 184,622 + +0.7 184,623 - +3.0 184,623 - -0.8 184,670 + +0.7 184,670 + -0.6 184,671 - -0.0 184,671 - +0.5 184,671 - -0.2 184,678 + +1.0 184,678 + +0.2 184,678 + -0.4 184,678 + -0.1 184,679 - -1.1 184,890 + +0.3 185,066 + Xcc-8004.192.1 0.31 -0.0 185,066 + Xcc-8004.192.1 0.31 -0.7 185,066 + Xcc-8004.192.1 0.31 +0.9 185,066 + Xcc-8004.192.1 0.31 -0.3 185,066 + Xcc-8004.192.1 0.31 -1.2 185,067 - Xcc-8004.192.1 0.31 -0.5 185,067 - Xcc-8004.192.1 0.31 -1.2 185,067 - Xcc-8004.192.1 0.31 +0.6 185,067 - Xcc-8004.192.1 0.31 +0.1 185,074 + Xcc-8004.192.1 0.32 -0.7 185,075 - Xcc-8004.192.1 0.33 -1.8 185,114 + Xcc-8004.192.1 0.40 -2.2 185,114 + Xcc-8004.192.1 0.40 -3.7 185,114 + Xcc-8004.192.1 0.40 +0.1 185,114 + Xcc-8004.192.1 0.40 -2.2 185,133 + Xcc-8004.192.1 0.44 +0.6 185,170 - Xcc-8004.192.1 0.52 -0.0 185,170 - Xcc-8004.192.1 0.52 -1.6 185,288 + Xcc-8004.192.1 0.76 +1.1
Or see this region's nucleotide sequence