Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1692.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1690.1 and Xcc-8004.1691.1 are separated by 23 nucleotidesXcc-8004.1691.1 and Xcc-8004.1692.1 are separated by 5 nucleotidesXcc-8004.1692.1 and Xcc-8004.1693.1 overlap by 8 nucleotidesXcc-8004.1693.1 and Xcc-8004.1694.1 are separated by 48 nucleotides Xcc-8004.1690.1: Xcc-8004.1690.1 - FIG019993: putative exported protein, at 1,623,901 to 1,624,416 Xcc-8004.1690.1 Xcc-8004.1691.1: Xcc-8004.1691.1 - FIG019175: putative membrane protein, at 1,624,440 to 1,625,084 Xcc-8004.1691.1 Xcc-8004.1692.1: Xcc-8004.1692.1 - FOG: TPR repeat, SEL1 subfamily, at 1,625,090 to 1,625,848 Xcc-8004.1692.1 Xcc-8004.1693.1: Xcc-8004.1693.1 - Iron-uptake factor PiuC, at 1,625,841 to 1,626,527 Xcc-8004.1693.1 Xcc-8004.1694.1: Xcc-8004.1694.1 - Ferrichrome-iron receptor, at 1,626,576 to 1,628,894 Xcc-8004.1694.1 Position (kb) 1625 1626Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1624.239 kb on - strand, within Xcc-8004.1690.1at 1624.239 kb on - strand, within Xcc-8004.1690.1at 1624.298 kb on + strand, within Xcc-8004.1690.1at 1624.298 kb on + strand, within Xcc-8004.1690.1at 1624.298 kb on + strand, within Xcc-8004.1690.1at 1624.299 kb on - strand, within Xcc-8004.1690.1at 1624.311 kb on - strand, within Xcc-8004.1690.1at 1624.402 kb on + strandat 1624.403 kb on - strandat 1624.435 kb on + strandat 1624.485 kb on + strandat 1624.486 kb on - strandat 1624.537 kb on - strand, within Xcc-8004.1691.1at 1624.589 kb on + strand, within Xcc-8004.1691.1at 1624.741 kb on + strand, within Xcc-8004.1691.1at 1624.742 kb on - strand, within Xcc-8004.1691.1at 1624.877 kb on + strand, within Xcc-8004.1691.1at 1624.878 kb on - strand, within Xcc-8004.1691.1at 1625.394 kb on + strand, within Xcc-8004.1692.1at 1625.448 kb on + strand, within Xcc-8004.1692.1at 1625.448 kb on + strand, within Xcc-8004.1692.1at 1625.449 kb on - strand, within Xcc-8004.1692.1at 1625.499 kb on + strand, within Xcc-8004.1692.1at 1625.500 kb on - strand, within Xcc-8004.1692.1at 1625.500 kb on - strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.517 kb on + strand, within Xcc-8004.1692.1at 1625.518 kb on - strand, within Xcc-8004.1692.1at 1625.518 kb on - strand, within Xcc-8004.1692.1at 1625.518 kb on - strand, within Xcc-8004.1692.1at 1625.518 kb on - strand, within Xcc-8004.1692.1at 1625.518 kb on - strand, within Xcc-8004.1692.1at 1625.715 kb on + strand, within Xcc-8004.1692.1at 1625.772 kb on - strand, within Xcc-8004.1692.1at 1625.876 kb on - strandat 1625.876 kb on - strandat 1626.044 kb on + strand, within Xcc-8004.1693.1at 1626.044 kb on + strand, within Xcc-8004.1693.1at 1626.044 kb on + strand, within Xcc-8004.1693.1at 1626.044 kb on + strand, within Xcc-8004.1693.1at 1626.045 kb on - strand, within Xcc-8004.1693.1at 1626.045 kb on - strand, within Xcc-8004.1693.1at 1626.064 kb on + strand, within Xcc-8004.1693.1at 1626.109 kb on + strand, within Xcc-8004.1693.1at 1626.109 kb on + strand, within Xcc-8004.1693.1at 1626.109 kb on + strand, within Xcc-8004.1693.1at 1626.109 kb on + strand, within Xcc-8004.1693.1at 1626.110 kb on - strand, within Xcc-8004.1693.1at 1626.110 kb on - strand, within Xcc-8004.1693.1at 1626.110 kb on - strand, within Xcc-8004.1693.1at 1626.110 kb on - strand, within Xcc-8004.1693.1at 1626.142 kb on + strand, within Xcc-8004.1693.1at 1626.143 kb on - strand, within Xcc-8004.1693.1at 1626.245 kb on - strand, within Xcc-8004.1693.1at 1626.289 kb on + strand, within Xcc-8004.1693.1at 1626.289 kb on + strand, within Xcc-8004.1693.1at 1626.289 kb on + strand, within Xcc-8004.1693.1at 1626.290 kb on - strand, within Xcc-8004.1693.1at 1626.324 kb on - strand, within Xcc-8004.1693.1at 1626.324 kb on - strand, within Xcc-8004.1693.1at 1626.324 kb on - strand, within Xcc-8004.1693.1at 1626.694 kb on + strandat 1626.694 kb on + strandat 1626.695 kb on - strandat 1626.695 kb on - strandat 1626.695 kb on - strandat 1626.695 kb on - strandat 1626.695 kb on - strandat 1626.697 kb on + strandat 1626.698 kb on - strandat 1626.698 kb on - strandat 1626.698 kb on - strandat 1626.784 kb on + strandat 1626.844 kb on + strand, within Xcc-8004.1694.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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1,624,239 - Xcc-8004.1690.1 0.66 -0.1
1,624,239 - Xcc-8004.1690.1 0.66 -0.9
1,624,298 + Xcc-8004.1690.1 0.77 -0.1
1,624,298 + Xcc-8004.1690.1 0.77 +2.1
1,624,298 + Xcc-8004.1690.1 0.77 +1.3
1,624,299 - Xcc-8004.1690.1 0.77 +0.0
1,624,311 - Xcc-8004.1690.1 0.79 -0.4
1,624,402 + -2.1
1,624,403 - +0.6
1,624,435 + -0.5
1,624,485 + +0.8
1,624,486 - +2.4
1,624,537 - Xcc-8004.1691.1 0.15 +0.3
1,624,589 + Xcc-8004.1691.1 0.23 -0.3
1,624,741 + Xcc-8004.1691.1 0.47 -0.1
1,624,742 - Xcc-8004.1691.1 0.47 +0.4
1,624,877 + Xcc-8004.1691.1 0.68 -0.6
1,624,878 - Xcc-8004.1691.1 0.68 +0.1
1,625,394 + Xcc-8004.1692.1 0.40 -0.8
1,625,448 + Xcc-8004.1692.1 0.47 -0.1
1,625,448 + Xcc-8004.1692.1 0.47 -0.4
1,625,449 - Xcc-8004.1692.1 0.47 -0.0
1,625,499 + Xcc-8004.1692.1 0.54 +0.5
1,625,500 - Xcc-8004.1692.1 0.54 -0.7
1,625,500 - Xcc-8004.1692.1 0.54 -1.1
1,625,517 + Xcc-8004.1692.1 0.56 -0.5
1,625,517 + Xcc-8004.1692.1 0.56 -1.1
1,625,517 + Xcc-8004.1692.1 0.56 -2.1
1,625,517 + Xcc-8004.1692.1 0.56 -1.3
1,625,517 + Xcc-8004.1692.1 0.56 -0.4
1,625,517 + Xcc-8004.1692.1 0.56 -1.0
1,625,517 + Xcc-8004.1692.1 0.56 -1.6
1,625,518 - Xcc-8004.1692.1 0.56 -1.8
1,625,518 - Xcc-8004.1692.1 0.56 -2.2
1,625,518 - Xcc-8004.1692.1 0.56 -0.8
1,625,518 - Xcc-8004.1692.1 0.56 -0.9
1,625,518 - Xcc-8004.1692.1 0.56 -0.9
1,625,715 + Xcc-8004.1692.1 0.82 -2.1
1,625,772 - Xcc-8004.1692.1 0.90 +0.3
1,625,876 - -1.0
1,625,876 - +0.8
1,626,044 + Xcc-8004.1693.1 0.30 -1.8
1,626,044 + Xcc-8004.1693.1 0.30 -0.7
1,626,044 + Xcc-8004.1693.1 0.30 -1.9
1,626,044 + Xcc-8004.1693.1 0.30 +0.1
1,626,045 - Xcc-8004.1693.1 0.30 +1.4
1,626,045 - Xcc-8004.1693.1 0.30 -0.8
1,626,064 + Xcc-8004.1693.1 0.32 +0.3
1,626,109 + Xcc-8004.1693.1 0.39 -0.3
1,626,109 + Xcc-8004.1693.1 0.39 -0.8
1,626,109 + Xcc-8004.1693.1 0.39 +0.7
1,626,109 + Xcc-8004.1693.1 0.39 -0.5
1,626,110 - Xcc-8004.1693.1 0.39 -3.1
1,626,110 - Xcc-8004.1693.1 0.39 -2.6
1,626,110 - Xcc-8004.1693.1 0.39 +1.2
1,626,110 - Xcc-8004.1693.1 0.39 -2.7
1,626,142 + Xcc-8004.1693.1 0.44 +1.0
1,626,143 - Xcc-8004.1693.1 0.44 +0.0
1,626,245 - Xcc-8004.1693.1 0.59 +1.0
1,626,289 + Xcc-8004.1693.1 0.65 -2.4
1,626,289 + Xcc-8004.1693.1 0.65 -0.8
1,626,289 + Xcc-8004.1693.1 0.65 -1.2
1,626,290 - Xcc-8004.1693.1 0.65 -0.9
1,626,324 - Xcc-8004.1693.1 0.70 -1.1
1,626,324 - Xcc-8004.1693.1 0.70 +0.5
1,626,324 - Xcc-8004.1693.1 0.70 -0.2
1,626,694 + -3.2
1,626,694 + -2.4
1,626,695 - -0.1
1,626,695 - -0.3
1,626,695 - -0.1
1,626,695 - -0.6
1,626,695 - -0.1
1,626,697 + +0.0
1,626,698 - -0.8
1,626,698 - -2.5
1,626,698 - -2.9
1,626,784 + -0.4
1,626,844 + Xcc-8004.1694.1 0.12 -2.4

Or see this region's nucleotide sequence