Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1652.1 and Xcc-8004.1653.1 are separated by 268 nucleotides Xcc-8004.1653.1 and Xcc-8004.1654.1 are separated by 98 nucleotides
Xcc-8004.1652.1: Xcc-8004.1652.1 - putative Cytochrome bd2, subunit II, at 1,591,307 to 1,592,323
Xcc-8004.1652.1
Xcc-8004.1653.1: Xcc-8004.1653.1 - FIG01210004: hypothetical protein, at 1,592,592 to 1,593,386
Xcc-8004.1653.1
Xcc-8004.1654.1: Xcc-8004.1654.1 - Mg/Co/Ni transporter MgtE / CBS domain, at 1,593,485 to 1,594,846
Xcc-8004.1654.1
Position (kb) 1592
1593
1594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1591.657 kb on + strand, within Xcc-8004.1652.1 at 1591.722 kb on + strand, within Xcc-8004.1652.1 at 1591.751 kb on + strand, within Xcc-8004.1652.1 at 1591.820 kb on + strand, within Xcc-8004.1652.1 at 1591.821 kb on - strand, within Xcc-8004.1652.1 at 1591.821 kb on - strand, within Xcc-8004.1652.1 at 1591.891 kb on - strand, within Xcc-8004.1652.1 at 1591.997 kb on + strand, within Xcc-8004.1652.1 at 1591.998 kb on - strand, within Xcc-8004.1652.1 at 1592.153 kb on + strand, within Xcc-8004.1652.1 at 1592.171 kb on + strand, within Xcc-8004.1652.1 at 1592.172 kb on - strand, within Xcc-8004.1652.1 at 1592.259 kb on - strand at 1592.259 kb on - strand at 1592.259 kb on - strand at 1592.312 kb on + strand at 1592.497 kb on + strand at 1592.498 kb on - strand at 1592.575 kb on + strand at 1592.576 kb on - strand at 1592.641 kb on + strand at 1592.641 kb on + strand at 1592.642 kb on - strand at 1592.642 kb on - strand at 1592.686 kb on + strand, within Xcc-8004.1653.1 at 1592.722 kb on + strand, within Xcc-8004.1653.1 at 1592.819 kb on - strand, within Xcc-8004.1653.1 at 1592.851 kb on + strand, within Xcc-8004.1653.1 at 1592.852 kb on - strand, within Xcc-8004.1653.1 at 1592.852 kb on - strand, within Xcc-8004.1653.1 at 1592.852 kb on - strand, within Xcc-8004.1653.1 at 1592.852 kb on - strand, within Xcc-8004.1653.1 at 1592.852 kb on - strand, within Xcc-8004.1653.1 at 1592.980 kb on + strand, within Xcc-8004.1653.1 at 1592.980 kb on + strand, within Xcc-8004.1653.1 at 1592.980 kb on + strand, within Xcc-8004.1653.1 at 1592.980 kb on + strand, within Xcc-8004.1653.1 at 1592.981 kb on - strand, within Xcc-8004.1653.1 at 1592.981 kb on - strand, within Xcc-8004.1653.1 at 1592.981 kb on - strand, within Xcc-8004.1653.1 at 1593.250 kb on + strand, within Xcc-8004.1653.1 at 1593.256 kb on + strand, within Xcc-8004.1653.1 at 1593.257 kb on - strand, within Xcc-8004.1653.1 at 1593.257 kb on - strand, within Xcc-8004.1653.1 at 1594.082 kb on - strand, within Xcc-8004.1654.1 at 1594.317 kb on + strand, within Xcc-8004.1654.1 at 1594.318 kb on - strand, within Xcc-8004.1654.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,591,657 + Xcc-8004.1652.1 0.34 -1.8 1,591,722 + Xcc-8004.1652.1 0.41 -0.7 1,591,751 + Xcc-8004.1652.1 0.44 -1.2 1,591,820 + Xcc-8004.1652.1 0.50 -2.0 1,591,821 - Xcc-8004.1652.1 0.51 -0.5 1,591,821 - Xcc-8004.1652.1 0.51 -0.8 1,591,891 - Xcc-8004.1652.1 0.57 -0.2 1,591,997 + Xcc-8004.1652.1 0.68 -2.7 1,591,998 - Xcc-8004.1652.1 0.68 -0.9 1,592,153 + Xcc-8004.1652.1 0.83 +0.1 1,592,171 + Xcc-8004.1652.1 0.85 -2.8 1,592,172 - Xcc-8004.1652.1 0.85 -3.7 1,592,259 - -2.6 1,592,259 - -2.1 1,592,259 - -1.3 1,592,312 + +0.3 1,592,497 + -0.0 1,592,498 - -1.5 1,592,575 + -2.9 1,592,576 - +0.5 1,592,641 + +0.3 1,592,641 + +0.5 1,592,642 - +0.9 1,592,642 - +0.5 1,592,686 + Xcc-8004.1653.1 0.12 -0.6 1,592,722 + Xcc-8004.1653.1 0.16 -0.4 1,592,819 - Xcc-8004.1653.1 0.29 -0.7 1,592,851 + Xcc-8004.1653.1 0.33 -1.8 1,592,852 - Xcc-8004.1653.1 0.33 +2.2 1,592,852 - Xcc-8004.1653.1 0.33 -0.6 1,592,852 - Xcc-8004.1653.1 0.33 +0.5 1,592,852 - Xcc-8004.1653.1 0.33 +0.6 1,592,852 - Xcc-8004.1653.1 0.33 -0.9 1,592,980 + Xcc-8004.1653.1 0.49 -1.1 1,592,980 + Xcc-8004.1653.1 0.49 -2.8 1,592,980 + Xcc-8004.1653.1 0.49 -0.7 1,592,980 + Xcc-8004.1653.1 0.49 -0.9 1,592,981 - Xcc-8004.1653.1 0.49 -0.6 1,592,981 - Xcc-8004.1653.1 0.49 -1.7 1,592,981 - Xcc-8004.1653.1 0.49 -2.7 1,593,250 + Xcc-8004.1653.1 0.83 -0.5 1,593,256 + Xcc-8004.1653.1 0.84 -1.0 1,593,257 - Xcc-8004.1653.1 0.84 -0.7 1,593,257 - Xcc-8004.1653.1 0.84 -1.9 1,594,082 - Xcc-8004.1654.1 0.44 -1.6 1,594,317 + Xcc-8004.1654.1 0.61 +0.1 1,594,318 - Xcc-8004.1654.1 0.61 +2.4
Or see this region's nucleotide sequence