Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1652.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1651.1 and Xcc-8004.1652.1 overlap by 1 nucleotidesXcc-8004.1652.1 and Xcc-8004.1653.1 are separated by 268 nucleotides Xcc-8004.1651.1: Xcc-8004.1651.1 - putative Cytochrome bd2, subunit I, at 1,589,910 to 1,591,307 Xcc-8004.1651.1 Xcc-8004.1652.1: Xcc-8004.1652.1 - putative Cytochrome bd2, subunit II, at 1,591,307 to 1,592,323 Xcc-8004.1652.1 Xcc-8004.1653.1: Xcc-8004.1653.1 - FIG01210004: hypothetical protein, at 1,592,592 to 1,593,386 Xcc-8004.1653.1 Position (kb) 1591 1592 1593Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1590.516 kb on + strand, within Xcc-8004.1651.1at 1590.517 kb on - strand, within Xcc-8004.1651.1at 1590.517 kb on - strand, within Xcc-8004.1651.1at 1590.758 kb on - strand, within Xcc-8004.1651.1at 1591.063 kb on - strand, within Xcc-8004.1651.1at 1591.063 kb on - strand, within Xcc-8004.1651.1at 1591.071 kb on + strand, within Xcc-8004.1651.1at 1591.071 kb on + strand, within Xcc-8004.1651.1at 1591.072 kb on - strand, within Xcc-8004.1651.1at 1591.072 kb on - strand, within Xcc-8004.1651.1at 1591.072 kb on - strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.144 kb on - strand, within Xcc-8004.1651.1at 1591.144 kb on - strand, within Xcc-8004.1651.1at 1591.186 kb on - strandat 1591.186 kb on - strandat 1591.370 kb on + strandat 1591.370 kb on + strandat 1591.370 kb on + strandat 1591.370 kb on + strandat 1591.370 kb on + strandat 1591.371 kb on - strandat 1591.371 kb on - strandat 1591.371 kb on - strandat 1591.539 kb on - strand, within Xcc-8004.1652.1at 1591.539 kb on - strand, within Xcc-8004.1652.1at 1591.562 kb on + strand, within Xcc-8004.1652.1at 1591.562 kb on + strand, within Xcc-8004.1652.1at 1591.562 kb on + strand, within Xcc-8004.1652.1at 1591.563 kb on - strand, within Xcc-8004.1652.1at 1591.563 kb on - strand, within Xcc-8004.1652.1at 1591.563 kb on - strand, within Xcc-8004.1652.1at 1591.563 kb on - strand, within Xcc-8004.1652.1at 1591.567 kb on - strand, within Xcc-8004.1652.1at 1591.567 kb on - strand, within Xcc-8004.1652.1at 1591.567 kb on - strand, within Xcc-8004.1652.1at 1591.657 kb on + strand, within Xcc-8004.1652.1at 1591.722 kb on + strand, within Xcc-8004.1652.1at 1591.751 kb on + strand, within Xcc-8004.1652.1at 1591.820 kb on + strand, within Xcc-8004.1652.1at 1591.821 kb on - strand, within Xcc-8004.1652.1at 1591.821 kb on - strand, within Xcc-8004.1652.1at 1591.891 kb on - strand, within Xcc-8004.1652.1at 1591.997 kb on + strand, within Xcc-8004.1652.1at 1591.998 kb on - strand, within Xcc-8004.1652.1at 1592.153 kb on + strand, within Xcc-8004.1652.1at 1592.171 kb on + strand, within Xcc-8004.1652.1at 1592.172 kb on - strand, within Xcc-8004.1652.1at 1592.259 kb on - strandat 1592.259 kb on - strandat 1592.259 kb on - strandat 1592.312 kb on + strandat 1592.497 kb on + strandat 1592.498 kb on - strandat 1592.575 kb on + strandat 1592.576 kb on - strandat 1592.641 kb on + strandat 1592.641 kb on + strandat 1592.642 kb on - strandat 1592.642 kb on - strandat 1592.686 kb on + strand, within Xcc-8004.1653.1at 1592.722 kb on + strand, within Xcc-8004.1653.1at 1592.819 kb on - strand, within Xcc-8004.1653.1at 1592.851 kb on + strand, within Xcc-8004.1653.1at 1592.852 kb on - strand, within Xcc-8004.1653.1at 1592.852 kb on - strand, within Xcc-8004.1653.1at 1592.852 kb on - strand, within Xcc-8004.1653.1at 1592.852 kb on - strand, within Xcc-8004.1653.1at 1592.852 kb on - strand, within Xcc-8004.1653.1at 1592.980 kb on + strand, within Xcc-8004.1653.1at 1592.980 kb on + strand, within Xcc-8004.1653.1at 1592.980 kb on + strand, within Xcc-8004.1653.1at 1592.980 kb on + strand, within Xcc-8004.1653.1at 1592.981 kb on - strand, within Xcc-8004.1653.1at 1592.981 kb on - strand, within Xcc-8004.1653.1at 1592.981 kb on - strand, within Xcc-8004.1653.1at 1593.250 kb on + strand, within Xcc-8004.1653.1at 1593.256 kb on + strand, within Xcc-8004.1653.1at 1593.257 kb on - strand, within Xcc-8004.1653.1at 1593.257 kb on - strand, within Xcc-8004.1653.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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1,590,516 + Xcc-8004.1651.1 0.43 -1.1
1,590,517 - Xcc-8004.1651.1 0.43 -1.1
1,590,517 - Xcc-8004.1651.1 0.43 -2.5
1,590,758 - Xcc-8004.1651.1 0.61 +0.2
1,591,063 - Xcc-8004.1651.1 0.82 -2.6
1,591,063 - Xcc-8004.1651.1 0.82 +0.7
1,591,071 + Xcc-8004.1651.1 0.83 -2.2
1,591,071 + Xcc-8004.1651.1 0.83 -1.1
1,591,072 - Xcc-8004.1651.1 0.83 -1.7
1,591,072 - Xcc-8004.1651.1 0.83 +0.5
1,591,072 - Xcc-8004.1651.1 0.83 -0.1
1,591,143 + Xcc-8004.1651.1 0.88 -3.7
1,591,143 + Xcc-8004.1651.1 0.88 -2.5
1,591,143 + Xcc-8004.1651.1 0.88 +0.7
1,591,143 + Xcc-8004.1651.1 0.88 -1.7
1,591,143 + Xcc-8004.1651.1 0.88 -1.0
1,591,143 + Xcc-8004.1651.1 0.88 -2.0
1,591,144 - Xcc-8004.1651.1 0.88 -2.3
1,591,144 - Xcc-8004.1651.1 0.88 -2.3
1,591,186 - +0.2
1,591,186 - -1.0
1,591,370 + -2.2
1,591,370 + -1.2
1,591,370 + -2.0
1,591,370 + -0.0
1,591,370 + -1.7
1,591,371 - -1.8
1,591,371 - -2.5
1,591,371 - -1.7
1,591,539 - Xcc-8004.1652.1 0.23 +0.0
1,591,539 - Xcc-8004.1652.1 0.23 -0.8
1,591,562 + Xcc-8004.1652.1 0.25 -1.1
1,591,562 + Xcc-8004.1652.1 0.25 -1.4
1,591,562 + Xcc-8004.1652.1 0.25 -3.2
1,591,563 - Xcc-8004.1652.1 0.25 -1.7
1,591,563 - Xcc-8004.1652.1 0.25 -1.4
1,591,563 - Xcc-8004.1652.1 0.25 -2.4
1,591,563 - Xcc-8004.1652.1 0.25 -3.5
1,591,567 - Xcc-8004.1652.1 0.26 -0.5
1,591,567 - Xcc-8004.1652.1 0.26 +2.0
1,591,567 - Xcc-8004.1652.1 0.26 -2.1
1,591,657 + Xcc-8004.1652.1 0.34 -1.8
1,591,722 + Xcc-8004.1652.1 0.41 -0.7
1,591,751 + Xcc-8004.1652.1 0.44 -1.2
1,591,820 + Xcc-8004.1652.1 0.50 -2.0
1,591,821 - Xcc-8004.1652.1 0.51 -0.5
1,591,821 - Xcc-8004.1652.1 0.51 -0.8
1,591,891 - Xcc-8004.1652.1 0.57 -0.2
1,591,997 + Xcc-8004.1652.1 0.68 -2.7
1,591,998 - Xcc-8004.1652.1 0.68 -0.9
1,592,153 + Xcc-8004.1652.1 0.83 +0.1
1,592,171 + Xcc-8004.1652.1 0.85 -2.8
1,592,172 - Xcc-8004.1652.1 0.85 -3.7
1,592,259 - -2.6
1,592,259 - -2.1
1,592,259 - -1.3
1,592,312 + +0.3
1,592,497 + -0.0
1,592,498 - -1.5
1,592,575 + -2.9
1,592,576 - +0.5
1,592,641 + +0.3
1,592,641 + +0.5
1,592,642 - +0.9
1,592,642 - +0.5
1,592,686 + Xcc-8004.1653.1 0.12 -0.6
1,592,722 + Xcc-8004.1653.1 0.16 -0.4
1,592,819 - Xcc-8004.1653.1 0.29 -0.7
1,592,851 + Xcc-8004.1653.1 0.33 -1.8
1,592,852 - Xcc-8004.1653.1 0.33 +2.2
1,592,852 - Xcc-8004.1653.1 0.33 -0.6
1,592,852 - Xcc-8004.1653.1 0.33 +0.5
1,592,852 - Xcc-8004.1653.1 0.33 +0.6
1,592,852 - Xcc-8004.1653.1 0.33 -0.9
1,592,980 + Xcc-8004.1653.1 0.49 -1.1
1,592,980 + Xcc-8004.1653.1 0.49 -2.8
1,592,980 + Xcc-8004.1653.1 0.49 -0.7
1,592,980 + Xcc-8004.1653.1 0.49 -0.9
1,592,981 - Xcc-8004.1653.1 0.49 -0.6
1,592,981 - Xcc-8004.1653.1 0.49 -1.7
1,592,981 - Xcc-8004.1653.1 0.49 -2.7
1,593,250 + Xcc-8004.1653.1 0.83 -0.5
1,593,256 + Xcc-8004.1653.1 0.84 -1.0
1,593,257 - Xcc-8004.1653.1 0.84 -0.7
1,593,257 - Xcc-8004.1653.1 0.84 -1.9

Or see this region's nucleotide sequence