Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1586.1 and Xcc-8004.1587.1 overlap by 41 nucleotides Xcc-8004.1587.1 and Xcc-8004.1588.1 are separated by 9 nucleotides
Xcc-8004.1586.1: Xcc-8004.1586.1 - Glycosyltransferase, at 1,524,106 to 1,525,164
Xcc-8004.1586.1
Xcc-8004.1587.1: Xcc-8004.1587.1 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205), at 1,525,124 to 1,525,552
Xcc-8004.1587.1
Xcc-8004.1588.1: Xcc-8004.1588.1 - exported protein, conserved, at 1,525,562 to 1,527,526
Xcc-8004.1588.1
Position (kb) 1525
1526 Strain fitness (log2 ratio) -2
-1
0
1 at 1524.271 kb on + strand, within Xcc-8004.1586.1 at 1524.271 kb on + strand, within Xcc-8004.1586.1 at 1524.271 kb on + strand, within Xcc-8004.1586.1 at 1524.271 kb on + strand, within Xcc-8004.1586.1 at 1524.271 kb on + strand, within Xcc-8004.1586.1 at 1524.271 kb on + strand, within Xcc-8004.1586.1 at 1524.272 kb on - strand, within Xcc-8004.1586.1 at 1524.272 kb on - strand, within Xcc-8004.1586.1 at 1524.272 kb on - strand, within Xcc-8004.1586.1 at 1524.272 kb on - strand, within Xcc-8004.1586.1 at 1524.272 kb on - strand, within Xcc-8004.1586.1 at 1524.364 kb on - strand, within Xcc-8004.1586.1 at 1524.364 kb on - strand, within Xcc-8004.1586.1 at 1524.571 kb on + strand, within Xcc-8004.1586.1 at 1524.851 kb on - strand, within Xcc-8004.1586.1 at 1524.851 kb on - strand, within Xcc-8004.1586.1 at 1524.851 kb on - strand, within Xcc-8004.1586.1 at 1524.851 kb on - strand, within Xcc-8004.1586.1 at 1524.851 kb on - strand, within Xcc-8004.1586.1 at 1524.851 kb on - strand, within Xcc-8004.1586.1 at 1525.013 kb on - strand, within Xcc-8004.1586.1 at 1525.028 kb on - strand, within Xcc-8004.1586.1 at 1525.054 kb on + strand, within Xcc-8004.1586.1 at 1525.055 kb on - strand, within Xcc-8004.1586.1 at 1525.055 kb on - strand, within Xcc-8004.1586.1 at 1525.070 kb on - strand at 1525.070 kb on - strand at 1525.088 kb on + strand at 1525.088 kb on + strand at 1525.088 kb on + strand at 1525.089 kb on - strand at 1525.089 kb on - strand at 1525.289 kb on + strand, within Xcc-8004.1587.1 at 1525.290 kb on - strand, within Xcc-8004.1587.1 at 1525.434 kb on + strand, within Xcc-8004.1587.1 at 1525.435 kb on - strand, within Xcc-8004.1587.1 at 1525.448 kb on - strand, within Xcc-8004.1587.1 at 1525.538 kb on + strand at 1525.538 kb on + strand at 1525.572 kb on + strand at 1525.573 kb on - strand at 1525.573 kb on - strand at 1525.819 kb on + strand, within Xcc-8004.1588.1 at 1525.820 kb on - strand, within Xcc-8004.1588.1 at 1525.950 kb on + strand, within Xcc-8004.1588.1 at 1525.950 kb on + strand, within Xcc-8004.1588.1 at 1525.950 kb on + strand, within Xcc-8004.1588.1 at 1525.950 kb on + strand, within Xcc-8004.1588.1 at 1525.950 kb on + strand, within Xcc-8004.1588.1 at 1525.950 kb on + strand, within Xcc-8004.1588.1 at 1525.951 kb on - strand, within Xcc-8004.1588.1 at 1525.951 kb on - strand, within Xcc-8004.1588.1 at 1525.969 kb on + strand, within Xcc-8004.1588.1 at 1526.047 kb on + strand, within Xcc-8004.1588.1 at 1526.332 kb on + strand, within Xcc-8004.1588.1 at 1526.332 kb on + strand, within Xcc-8004.1588.1 at 1526.332 kb on + strand, within Xcc-8004.1588.1 at 1526.333 kb on - strand, within Xcc-8004.1588.1 at 1526.394 kb on + strand, within Xcc-8004.1588.1 at 1526.411 kb on + strand, within Xcc-8004.1588.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,524,271 + Xcc-8004.1586.1 0.16 +0.6 1,524,271 + Xcc-8004.1586.1 0.16 -0.9 1,524,271 + Xcc-8004.1586.1 0.16 +0.5 1,524,271 + Xcc-8004.1586.1 0.16 -0.2 1,524,271 + Xcc-8004.1586.1 0.16 -0.4 1,524,271 + Xcc-8004.1586.1 0.16 -1.0 1,524,272 - Xcc-8004.1586.1 0.16 -0.3 1,524,272 - Xcc-8004.1586.1 0.16 +0.8 1,524,272 - Xcc-8004.1586.1 0.16 -1.5 1,524,272 - Xcc-8004.1586.1 0.16 -2.5 1,524,272 - Xcc-8004.1586.1 0.16 -0.2 1,524,364 - Xcc-8004.1586.1 0.24 +0.1 1,524,364 - Xcc-8004.1586.1 0.24 +0.8 1,524,571 + Xcc-8004.1586.1 0.44 -1.7 1,524,851 - Xcc-8004.1586.1 0.70 +0.3 1,524,851 - Xcc-8004.1586.1 0.70 -1.0 1,524,851 - Xcc-8004.1586.1 0.70 +1.5 1,524,851 - Xcc-8004.1586.1 0.70 +1.4 1,524,851 - Xcc-8004.1586.1 0.70 +0.2 1,524,851 - Xcc-8004.1586.1 0.70 -1.8 1,525,013 - Xcc-8004.1586.1 0.86 +0.1 1,525,028 - Xcc-8004.1586.1 0.87 -0.3 1,525,054 + Xcc-8004.1586.1 0.90 +0.0 1,525,055 - Xcc-8004.1586.1 0.90 +0.5 1,525,055 - Xcc-8004.1586.1 0.90 +1.1 1,525,070 - -2.3 1,525,070 - -0.5 1,525,088 + -1.1 1,525,088 + -0.1 1,525,088 + -0.1 1,525,089 - -0.4 1,525,089 - +1.6 1,525,289 + Xcc-8004.1587.1 0.38 -0.8 1,525,290 - Xcc-8004.1587.1 0.39 -0.7 1,525,434 + Xcc-8004.1587.1 0.72 -2.0 1,525,435 - Xcc-8004.1587.1 0.72 -0.9 1,525,448 - Xcc-8004.1587.1 0.76 +1.4 1,525,538 + +0.6 1,525,538 + +1.0 1,525,572 + +0.0 1,525,573 - -1.3 1,525,573 - -1.2 1,525,819 + Xcc-8004.1588.1 0.13 +0.5 1,525,820 - Xcc-8004.1588.1 0.13 -0.0 1,525,950 + Xcc-8004.1588.1 0.20 +0.1 1,525,950 + Xcc-8004.1588.1 0.20 -2.5 1,525,950 + Xcc-8004.1588.1 0.20 +1.0 1,525,950 + Xcc-8004.1588.1 0.20 -2.7 1,525,950 + Xcc-8004.1588.1 0.20 +0.1 1,525,950 + Xcc-8004.1588.1 0.20 +0.2 1,525,951 - Xcc-8004.1588.1 0.20 +0.5 1,525,951 - Xcc-8004.1588.1 0.20 -0.7 1,525,969 + Xcc-8004.1588.1 0.21 +0.4 1,526,047 + Xcc-8004.1588.1 0.25 -1.1 1,526,332 + Xcc-8004.1588.1 0.39 +1.3 1,526,332 + Xcc-8004.1588.1 0.39 +0.8 1,526,332 + Xcc-8004.1588.1 0.39 +0.4 1,526,333 - Xcc-8004.1588.1 0.39 +0.3 1,526,394 + Xcc-8004.1588.1 0.42 -0.8 1,526,411 + Xcc-8004.1588.1 0.43 -0.9
Or see this region's nucleotide sequence