Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1351.1 and Xcc-8004.1353.1 are separated by 418 nucleotides Xcc-8004.1353.1 and Xcc-8004.1354.1 are separated by 262 nucleotides
Xcc-8004.1351.1: Xcc-8004.1351.1 - Type IV fimbrial assembly, ATPase PilB, at 1,275,066 to 1,276,799
Xcc-8004.1351.1
Xcc-8004.1353.1: Xcc-8004.1353.1 - Type IV fimbriae expression regulatory protein PilR, at 1,277,218 to 1,278,558
Xcc-8004.1353.1
Xcc-8004.1354.1: Xcc-8004.1354.1 - Two-component sensor PilS, at 1,278,821 to 1,280,431
Xcc-8004.1354.1
Position (kb) 1277
1278
1279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1276.220 kb on + strand, within Xcc-8004.1351.1 at 1276.416 kb on + strand, within Xcc-8004.1351.1 at 1276.416 kb on + strand, within Xcc-8004.1351.1 at 1276.532 kb on + strand, within Xcc-8004.1351.1 at 1276.563 kb on + strand, within Xcc-8004.1351.1 at 1276.563 kb on + strand, within Xcc-8004.1351.1 at 1276.563 kb on + strand, within Xcc-8004.1351.1 at 1276.563 kb on + strand, within Xcc-8004.1351.1 at 1276.563 kb on + strand, within Xcc-8004.1351.1 at 1276.564 kb on - strand, within Xcc-8004.1351.1 at 1276.564 kb on - strand, within Xcc-8004.1351.1 at 1276.599 kb on + strand, within Xcc-8004.1351.1 at 1276.599 kb on + strand, within Xcc-8004.1351.1 at 1276.599 kb on + strand, within Xcc-8004.1351.1 at 1276.599 kb on + strand, within Xcc-8004.1351.1 at 1276.599 kb on + strand, within Xcc-8004.1351.1 at 1276.600 kb on - strand, within Xcc-8004.1351.1 at 1276.600 kb on - strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.621 kb on - strand, within Xcc-8004.1351.1 at 1276.621 kb on - strand, within Xcc-8004.1351.1 at 1276.621 kb on - strand, within Xcc-8004.1351.1 at 1276.854 kb on + strand at 1276.855 kb on - strand at 1276.855 kb on - strand at 1276.855 kb on - strand at 1276.862 kb on + strand at 1276.862 kb on + strand at 1276.863 kb on - strand at 1276.863 kb on - strand at 1276.863 kb on - strand at 1276.863 kb on - strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.876 kb on + strand at 1276.876 kb on + strand at 1276.876 kb on + strand at 1276.876 kb on + strand at 1276.876 kb on + strand at 1276.877 kb on - strand at 1276.956 kb on + strand at 1276.956 kb on + strand at 1276.956 kb on + strand at 1276.956 kb on + strand at 1276.956 kb on + strand at 1276.956 kb on + strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.960 kb on + strand at 1276.960 kb on + strand at 1277.006 kb on + strand at 1277.007 kb on - strand at 1277.007 kb on - strand at 1277.069 kb on + strand at 1277.180 kb on + strand at 1277.180 kb on + strand at 1277.219 kb on + strand at 1277.220 kb on - strand at 1277.220 kb on - strand at 1277.220 kb on - strand at 1277.220 kb on - strand at 1277.246 kb on + strand at 1277.246 kb on + strand at 1277.247 kb on - strand at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.558 kb on + strand, within Xcc-8004.1353.1 at 1277.558 kb on + strand, within Xcc-8004.1353.1 at 1277.558 kb on + strand, within Xcc-8004.1353.1 at 1277.558 kb on + strand, within Xcc-8004.1353.1 at 1277.559 kb on - strand, within Xcc-8004.1353.1 at 1277.559 kb on - strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.563 kb on - strand, within Xcc-8004.1353.1 at 1277.563 kb on - strand, within Xcc-8004.1353.1 at 1277.563 kb on - strand, within Xcc-8004.1353.1 at 1277.563 kb on - strand, within Xcc-8004.1353.1 at 1277.563 kb on - strand, within Xcc-8004.1353.1 at 1277.715 kb on - strand, within Xcc-8004.1353.1 at 1277.715 kb on - strand, within Xcc-8004.1353.1 at 1277.717 kb on + strand, within Xcc-8004.1353.1 at 1277.717 kb on + strand, within Xcc-8004.1353.1 at 1277.717 kb on + strand, within Xcc-8004.1353.1 at 1277.718 kb on - strand, within Xcc-8004.1353.1 at 1277.718 kb on - strand, within Xcc-8004.1353.1 at 1277.718 kb on - strand, within Xcc-8004.1353.1 at 1277.973 kb on + strand, within Xcc-8004.1353.1 at 1277.973 kb on + strand, within Xcc-8004.1353.1 at 1277.974 kb on - strand, within Xcc-8004.1353.1 at 1277.974 kb on - strand, within Xcc-8004.1353.1 at 1277.974 kb on - strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.117 kb on - strand, within Xcc-8004.1353.1 at 1278.117 kb on - strand, within Xcc-8004.1353.1 at 1278.117 kb on - strand, within Xcc-8004.1353.1 at 1278.117 kb on - strand, within Xcc-8004.1353.1 at 1278.117 kb on - strand, within Xcc-8004.1353.1 at 1278.392 kb on + strand, within Xcc-8004.1353.1 at 1278.467 kb on + strand at 1278.624 kb on + strand at 1278.624 kb on + strand at 1278.651 kb on + strand at 1278.822 kb on + strand at 1278.822 kb on + strand at 1278.834 kb on - strand at 1278.851 kb on + strand at 1278.851 kb on + strand at 1278.851 kb on + strand at 1278.852 kb on - strand at 1278.852 kb on - strand at 1278.852 kb on - strand at 1278.852 kb on - strand at 1278.939 kb on + strand at 1278.939 kb on + strand at 1278.939 kb on + strand at 1278.939 kb on + strand at 1278.939 kb on + strand at 1278.939 kb on + strand at 1278.940 kb on - strand at 1278.940 kb on - strand at 1278.940 kb on - strand at 1278.940 kb on - strand at 1278.940 kb on - strand at 1278.940 kb on - strand at 1278.975 kb on + strand at 1278.975 kb on + strand at 1278.975 kb on + strand at 1278.975 kb on + strand at 1278.976 kb on - strand at 1278.976 kb on - strand at 1278.976 kb on - strand at 1279.110 kb on + strand, within Xcc-8004.1354.1 at 1279.110 kb on + strand, within Xcc-8004.1354.1 at 1279.110 kb on + strand, within Xcc-8004.1354.1 at 1279.111 kb on - strand, within Xcc-8004.1354.1 at 1279.111 kb on - strand, within Xcc-8004.1354.1 at 1279.111 kb on - strand, within Xcc-8004.1354.1 at 1279.127 kb on + strand, within Xcc-8004.1354.1 at 1279.127 kb on + strand, within Xcc-8004.1354.1 at 1279.127 kb on + strand, within Xcc-8004.1354.1 at 1279.127 kb on + strand, within Xcc-8004.1354.1 at 1279.127 kb on + strand, within Xcc-8004.1354.1 at 1279.128 kb on - strand, within Xcc-8004.1354.1 at 1279.128 kb on - strand, within Xcc-8004.1354.1 at 1279.128 kb on - strand, within Xcc-8004.1354.1 at 1279.240 kb on - strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.429 kb on - strand, within Xcc-8004.1354.1 at 1279.429 kb on - strand, within Xcc-8004.1354.1 at 1279.429 kb on - strand, within Xcc-8004.1354.1 at 1279.429 kb on - strand, within Xcc-8004.1354.1 at 1279.429 kb on - strand, within Xcc-8004.1354.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,276,220 + Xcc-8004.1351.1 0.67 +0.5 1,276,416 + Xcc-8004.1351.1 0.78 +0.4 1,276,416 + Xcc-8004.1351.1 0.78 -0.2 1,276,532 + Xcc-8004.1351.1 0.85 -1.6 1,276,563 + Xcc-8004.1351.1 0.86 -0.3 1,276,563 + Xcc-8004.1351.1 0.86 -1.4 1,276,563 + Xcc-8004.1351.1 0.86 -0.0 1,276,563 + Xcc-8004.1351.1 0.86 -0.4 1,276,563 + Xcc-8004.1351.1 0.86 -0.4 1,276,564 - Xcc-8004.1351.1 0.86 -1.4 1,276,564 - Xcc-8004.1351.1 0.86 +0.2 1,276,599 + Xcc-8004.1351.1 0.88 -1.5 1,276,599 + Xcc-8004.1351.1 0.88 +1.2 1,276,599 + Xcc-8004.1351.1 0.88 -0.7 1,276,599 + Xcc-8004.1351.1 0.88 -0.3 1,276,599 + Xcc-8004.1351.1 0.88 -1.1 1,276,600 - Xcc-8004.1351.1 0.88 -1.6 1,276,600 - Xcc-8004.1351.1 0.88 +0.4 1,276,620 + Xcc-8004.1351.1 0.90 -0.2 1,276,620 + Xcc-8004.1351.1 0.90 +0.0 1,276,620 + Xcc-8004.1351.1 0.90 -0.6 1,276,620 + Xcc-8004.1351.1 0.90 -0.1 1,276,620 + Xcc-8004.1351.1 0.90 -0.9 1,276,620 + Xcc-8004.1351.1 0.90 -1.0 1,276,620 + Xcc-8004.1351.1 0.90 +1.0 1,276,621 - Xcc-8004.1351.1 0.90 -0.7 1,276,621 - Xcc-8004.1351.1 0.90 +0.4 1,276,621 - Xcc-8004.1351.1 0.90 +0.3 1,276,854 + -0.4 1,276,855 - +1.7 1,276,855 - -0.0 1,276,855 - +1.4 1,276,862 + +0.7 1,276,862 + -0.3 1,276,863 - -0.4 1,276,863 - -0.2 1,276,863 - +0.3 1,276,863 - +0.2 1,276,874 + +1.3 1,276,874 + -3.0 1,276,874 + -1.4 1,276,874 + -0.0 1,276,874 + -2.0 1,276,874 + +0.4 1,276,874 + +0.5 1,276,875 - -0.2 1,276,875 - -0.6 1,276,875 - -0.0 1,276,875 - -0.8 1,276,875 - -1.6 1,276,875 - +0.0 1,276,875 - -1.6 1,276,876 + -0.1 1,276,876 + -1.9 1,276,876 + +1.2 1,276,876 + -0.2 1,276,876 + -0.5 1,276,877 - -1.8 1,276,956 + +0.0 1,276,956 + -0.5 1,276,956 + +0.2 1,276,956 + +0.9 1,276,956 + -0.1 1,276,956 + -0.0 1,276,957 - +0.6 1,276,957 - -0.1 1,276,957 - -1.2 1,276,957 - -0.7 1,276,957 - -1.2 1,276,957 - +0.3 1,276,957 - +1.9 1,276,957 - -2.4 1,276,960 + -0.6 1,276,960 + -0.4 1,277,006 + +2.2 1,277,007 - -0.9 1,277,007 - -0.6 1,277,069 + -1.1 1,277,180 + +0.0 1,277,180 + +0.8 1,277,219 + +1.3 1,277,220 - -0.5 1,277,220 - -0.2 1,277,220 - -3.4 1,277,220 - -0.2 1,277,246 + -1.4 1,277,246 + -0.1 1,277,247 - +0.7 1,277,354 + Xcc-8004.1353.1 0.10 -0.2 1,277,354 + Xcc-8004.1353.1 0.10 -0.6 1,277,354 + Xcc-8004.1353.1 0.10 -1.0 1,277,354 + Xcc-8004.1353.1 0.10 -0.2 1,277,354 + Xcc-8004.1353.1 0.10 -1.3 1,277,354 + Xcc-8004.1353.1 0.10 +1.6 1,277,354 + Xcc-8004.1353.1 0.10 -0.3 1,277,355 - Xcc-8004.1353.1 0.10 -2.0 1,277,355 - Xcc-8004.1353.1 0.10 -1.9 1,277,355 - Xcc-8004.1353.1 0.10 +0.6 1,277,355 - Xcc-8004.1353.1 0.10 -0.2 1,277,355 - Xcc-8004.1353.1 0.10 -2.3 1,277,355 - Xcc-8004.1353.1 0.10 +0.8 1,277,355 - Xcc-8004.1353.1 0.10 +0.4 1,277,558 + Xcc-8004.1353.1 0.25 +0.6 1,277,558 + Xcc-8004.1353.1 0.25 +2.0 1,277,558 + Xcc-8004.1353.1 0.25 +0.2 1,277,558 + Xcc-8004.1353.1 0.25 -0.2 1,277,559 - Xcc-8004.1353.1 0.25 +0.3 1,277,559 - Xcc-8004.1353.1 0.25 +0.6 1,277,562 + Xcc-8004.1353.1 0.26 -0.8 1,277,562 + Xcc-8004.1353.1 0.26 -0.6 1,277,562 + Xcc-8004.1353.1 0.26 -0.1 1,277,562 + Xcc-8004.1353.1 0.26 -0.2 1,277,562 + Xcc-8004.1353.1 0.26 -2.5 1,277,562 + Xcc-8004.1353.1 0.26 -0.1 1,277,562 + Xcc-8004.1353.1 0.26 +1.4 1,277,562 + Xcc-8004.1353.1 0.26 -2.9 1,277,563 - Xcc-8004.1353.1 0.26 -0.7 1,277,563 - Xcc-8004.1353.1 0.26 +0.8 1,277,563 - Xcc-8004.1353.1 0.26 -1.0 1,277,563 - Xcc-8004.1353.1 0.26 +0.5 1,277,563 - Xcc-8004.1353.1 0.26 -0.4 1,277,715 - Xcc-8004.1353.1 0.37 -1.1 1,277,715 - Xcc-8004.1353.1 0.37 -3.1 1,277,717 + Xcc-8004.1353.1 0.37 -0.9 1,277,717 + Xcc-8004.1353.1 0.37 -3.1 1,277,717 + Xcc-8004.1353.1 0.37 +0.5 1,277,718 - Xcc-8004.1353.1 0.37 -0.6 1,277,718 - Xcc-8004.1353.1 0.37 -0.4 1,277,718 - Xcc-8004.1353.1 0.37 +0.6 1,277,973 + Xcc-8004.1353.1 0.56 +1.1 1,277,973 + Xcc-8004.1353.1 0.56 -0.5 1,277,974 - Xcc-8004.1353.1 0.56 -0.5 1,277,974 - Xcc-8004.1353.1 0.56 +1.2 1,277,974 - Xcc-8004.1353.1 0.56 -0.9 1,278,116 + Xcc-8004.1353.1 0.67 +0.3 1,278,116 + Xcc-8004.1353.1 0.67 -1.0 1,278,116 + Xcc-8004.1353.1 0.67 +0.5 1,278,116 + Xcc-8004.1353.1 0.67 -0.5 1,278,116 + Xcc-8004.1353.1 0.67 -1.0 1,278,116 + Xcc-8004.1353.1 0.67 +0.2 1,278,117 - Xcc-8004.1353.1 0.67 -0.5 1,278,117 - Xcc-8004.1353.1 0.67 +0.5 1,278,117 - Xcc-8004.1353.1 0.67 -0.2 1,278,117 - Xcc-8004.1353.1 0.67 +1.2 1,278,117 - Xcc-8004.1353.1 0.67 +0.7 1,278,392 + Xcc-8004.1353.1 0.88 -1.7 1,278,467 + +0.7 1,278,624 + -0.6 1,278,624 + -2.0 1,278,651 + +0.3 1,278,822 + -0.9 1,278,822 + -1.0 1,278,834 - -0.4 1,278,851 + -0.6 1,278,851 + -2.2 1,278,851 + -0.0 1,278,852 - -0.6 1,278,852 - -2.3 1,278,852 - +0.1 1,278,852 - -0.2 1,278,939 + +0.6 1,278,939 + -2.4 1,278,939 + +0.4 1,278,939 + +0.9 1,278,939 + -2.8 1,278,939 + +0.3 1,278,940 - -0.0 1,278,940 - +0.2 1,278,940 - +0.1 1,278,940 - -0.1 1,278,940 - -0.4 1,278,940 - +0.8 1,278,975 + -2.9 1,278,975 + -1.2 1,278,975 + -0.2 1,278,975 + -0.4 1,278,976 - +0.6 1,278,976 - +0.6 1,278,976 - +0.1 1,279,110 + Xcc-8004.1354.1 0.18 +0.6 1,279,110 + Xcc-8004.1354.1 0.18 -0.2 1,279,110 + Xcc-8004.1354.1 0.18 -2.1 1,279,111 - Xcc-8004.1354.1 0.18 +0.4 1,279,111 - Xcc-8004.1354.1 0.18 -1.8 1,279,111 - Xcc-8004.1354.1 0.18 -2.0 1,279,127 + Xcc-8004.1354.1 0.19 +2.0 1,279,127 + Xcc-8004.1354.1 0.19 -0.7 1,279,127 + Xcc-8004.1354.1 0.19 -0.8 1,279,127 + Xcc-8004.1354.1 0.19 +0.4 1,279,127 + Xcc-8004.1354.1 0.19 +0.6 1,279,128 - Xcc-8004.1354.1 0.19 +1.7 1,279,128 - Xcc-8004.1354.1 0.19 -0.2 1,279,128 - Xcc-8004.1354.1 0.19 -0.3 1,279,240 - Xcc-8004.1354.1 0.26 +0.6 1,279,428 + Xcc-8004.1354.1 0.38 -0.5 1,279,428 + Xcc-8004.1354.1 0.38 +0.8 1,279,428 + Xcc-8004.1354.1 0.38 -0.1 1,279,428 + Xcc-8004.1354.1 0.38 +1.0 1,279,428 + Xcc-8004.1354.1 0.38 +0.2 1,279,428 + Xcc-8004.1354.1 0.38 +0.2 1,279,428 + Xcc-8004.1354.1 0.38 -0.3 1,279,428 + Xcc-8004.1354.1 0.38 -0.2 1,279,428 + Xcc-8004.1354.1 0.38 -0.3 1,279,428 + Xcc-8004.1354.1 0.38 -0.6 1,279,428 + Xcc-8004.1354.1 0.38 -3.7 1,279,429 - Xcc-8004.1354.1 0.38 -1.7 1,279,429 - Xcc-8004.1354.1 0.38 -1.4 1,279,429 - Xcc-8004.1354.1 0.38 +0.5 1,279,429 - Xcc-8004.1354.1 0.38 -0.5 1,279,429 - Xcc-8004.1354.1 0.38 -1.6
Or see this region's nucleotide sequence