Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1180.1 and Xcc-8004.1181.1 are separated by 238 nucleotides Xcc-8004.1181.1 and Xcc-8004.1183.1 are separated by 565 nucleotides
Xcc-8004.1180.1: Xcc-8004.1180.1 - Transketolase (EC 2.2.1.1), at 1,113,412 to 1,115,412
Xcc-8004.1180.1
Xcc-8004.1181.1: Xcc-8004.1181.1 - Proton/glutamate symport protein @ Sodium/glutamate symport protein, at 1,115,651 to 1,116,931
Xcc-8004.1181.1
Xcc-8004.1183.1: Xcc-8004.1183.1 - BatD, at 1,117,497 to 1,119,236
Xcc-8004.1183.1
Position (kb)
1115
1116
1117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1115.421 kb on - strand at 1115.461 kb on - strand at 1115.628 kb on - strand at 1115.652 kb on + strand at 1115.799 kb on - strand, within Xcc-8004.1181.1 at 1115.801 kb on + strand, within Xcc-8004.1181.1 at 1115.802 kb on - strand, within Xcc-8004.1181.1 at 1116.147 kb on + strand, within Xcc-8004.1181.1 at 1116.642 kb on + strand, within Xcc-8004.1181.1 at 1116.642 kb on + strand, within Xcc-8004.1181.1 at 1116.786 kb on + strand, within Xcc-8004.1181.1 at 1116.787 kb on - strand, within Xcc-8004.1181.1 at 1116.787 kb on - strand, within Xcc-8004.1181.1 at 1116.787 kb on - strand, within Xcc-8004.1181.1 at 1116.787 kb on - strand, within Xcc-8004.1181.1 at 1116.787 kb on - strand, within Xcc-8004.1181.1 at 1116.787 kb on - strand, within Xcc-8004.1181.1 at 1116.787 kb on - strand, within Xcc-8004.1181.1 at 1116.787 kb on - strand, within Xcc-8004.1181.1 at 1116.831 kb on + strand at 1116.831 kb on + strand at 1116.831 kb on + strand at 1116.832 kb on - strand at 1116.832 kb on - strand at 1116.834 kb on + strand at 1116.835 kb on - strand at 1116.835 kb on - strand at 1116.835 kb on - strand at 1116.970 kb on - strand at 1116.995 kb on + strand at 1116.995 kb on + strand at 1116.996 kb on - strand at 1117.023 kb on + strand at 1117.023 kb on + strand at 1117.024 kb on - strand at 1117.029 kb on - strand at 1117.169 kb on - strand at 1117.259 kb on - strand at 1117.268 kb on + strand at 1117.268 kb on + strand at 1117.268 kb on + strand at 1117.268 kb on + strand at 1117.269 kb on - strand at 1117.269 kb on - strand at 1117.360 kb on + strand at 1117.360 kb on + strand at 1117.361 kb on - strand at 1117.361 kb on - strand at 1117.361 kb on - strand at 1117.361 kb on - strand at 1117.447 kb on - strand at 1117.447 kb on - strand at 1117.718 kb on + strand, within Xcc-8004.1183.1 at 1117.718 kb on + strand, within Xcc-8004.1183.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,115,421 - +2.2 1,115,461 - -0.9 1,115,628 - +1.2 1,115,652 + -0.1 1,115,799 - Xcc-8004.1181.1 0.12 +0.3 1,115,801 + Xcc-8004.1181.1 0.12 -0.1 1,115,802 - Xcc-8004.1181.1 0.12 +0.7 1,116,147 + Xcc-8004.1181.1 0.39 +0.2 1,116,642 + Xcc-8004.1181.1 0.77 -1.7 1,116,642 + Xcc-8004.1181.1 0.77 -1.9 1,116,786 + Xcc-8004.1181.1 0.89 -0.5 1,116,787 - Xcc-8004.1181.1 0.89 -1.1 1,116,787 - Xcc-8004.1181.1 0.89 +0.2 1,116,787 - Xcc-8004.1181.1 0.89 +1.4 1,116,787 - Xcc-8004.1181.1 0.89 +0.1 1,116,787 - Xcc-8004.1181.1 0.89 -0.8 1,116,787 - Xcc-8004.1181.1 0.89 -2.7 1,116,787 - Xcc-8004.1181.1 0.89 +1.1 1,116,787 - Xcc-8004.1181.1 0.89 +0.9 1,116,831 + -3.1 1,116,831 + +0.8 1,116,831 + -0.6 1,116,832 - -0.2 1,116,832 - -0.8 1,116,834 + +1.6 1,116,835 - +1.0 1,116,835 - +0.7 1,116,835 - -2.3 1,116,970 - +0.0 1,116,995 + +0.3 1,116,995 + +0.5 1,116,996 - -1.8 1,117,023 + +1.1 1,117,023 + +1.4 1,117,024 - -2.2 1,117,029 - +1.3 1,117,169 - +0.1 1,117,259 - +0.3 1,117,268 + -0.2 1,117,268 + +0.3 1,117,268 + -0.3 1,117,268 + -1.0 1,117,269 - +0.8 1,117,269 - -1.0 1,117,360 + +1.4 1,117,360 + -2.8 1,117,361 - -0.3 1,117,361 - +1.2 1,117,361 - +0.2 1,117,361 - +1.2 1,117,447 - -0.3 1,117,447 - -0.1 1,117,718 + Xcc-8004.1183.1 0.13 -1.2 1,117,718 + Xcc-8004.1183.1 0.13 -1.8
Or see this region's nucleotide sequence