Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_786

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_784 and Pf1N1B4_785 are separated by 282 nucleotidesPf1N1B4_785 and Pf1N1B4_786 are separated by 1 nucleotidesPf1N1B4_786 and Pf1N1B4_787 are separated by 23 nucleotidesPf1N1B4_787 and Pf1N1B4_788 are separated by 207 nucleotides Pf1N1B4_784 - Transcriptional activator MetR, at 894,862 to 895,779 _784 Pf1N1B4_785 - acetyltransferase, GNAT family, at 896,062 to 896,577 _785 Pf1N1B4_786 - L-lysine permease, at 896,579 to 897,217 _786 Pf1N1B4_787 - Nudix hydrolase family protein PA3470, at 897,241 to 897,675 _787 Pf1N1B4_788 - Response regulator, at 897,883 to 899,241 _788 Position (kb) 896 897 898Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 895.606 kb on + strand, within Pf1N1B4_784at 895.606 kb on + strand, within Pf1N1B4_784at 895.606 kb on + strandat 895.606 kb on + strand, within Pf1N1B4_784at 895.606 kb on + strand, within Pf1N1B4_784at 895.606 kb on + strand, within Pf1N1B4_784at 895.606 kb on + strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strandat 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strand, within Pf1N1B4_784at 895.607 kb on - strandat 895.621 kb on + strand, within Pf1N1B4_784at 895.621 kb on + strand, within Pf1N1B4_784at 895.622 kb on - strand, within Pf1N1B4_784at 895.670 kb on - strand, within Pf1N1B4_784at 895.705 kb on + strandat 895.706 kb on - strandat 895.854 kb on + strandat 895.854 kb on + strandat 895.854 kb on + strandat 895.855 kb on - strandat 895.863 kb on + strandat 895.863 kb on + strandat 895.863 kb on + strandat 895.863 kb on + strandat 895.863 kb on + strandat 895.863 kb on + strandat 895.863 kb on + strandat 895.863 kb on + strandat 895.863 kb on + strandat 895.864 kb on - strandat 895.961 kb on + strandat 895.961 kb on + strandat 895.962 kb on - strandat 896.114 kb on + strand, within Pf1N1B4_785at 896.115 kb on - strand, within Pf1N1B4_785at 896.178 kb on - strand, within Pf1N1B4_785at 896.178 kb on - strand, within Pf1N1B4_785at 896.316 kb on - strand, within Pf1N1B4_785at 896.316 kb on - strand, within Pf1N1B4_785at 896.316 kb on - strand, within Pf1N1B4_785at 896.416 kb on + strand, within Pf1N1B4_785at 896.417 kb on - strand, within Pf1N1B4_785at 896.417 kb on - strand, within Pf1N1B4_785at 896.417 kb on - strand, within Pf1N1B4_785at 896.646 kb on + strand, within Pf1N1B4_786at 896.647 kb on - strand, within Pf1N1B4_786at 896.647 kb on - strand, within Pf1N1B4_786at 896.970 kb on + strandat 897.063 kb on - strand, within Pf1N1B4_786at 897.063 kb on - strand, within Pf1N1B4_786at 897.138 kb on + strand, within Pf1N1B4_786at 897.138 kb on + strand, within Pf1N1B4_786at 897.138 kb on + strand, within Pf1N1B4_786at 897.139 kb on - strand, within Pf1N1B4_786at 897.139 kb on - strand, within Pf1N1B4_786at 897.139 kb on - strand, within Pf1N1B4_786at 897.164 kb on + strandat 897.281 kb on - strandat 897.281 kb on - strandat 897.409 kb on + strandat 897.410 kb on - strand, within Pf1N1B4_787at 897.410 kb on - strand, within Pf1N1B4_787at 897.746 kb on + strandat 897.747 kb on - strandat 897.765 kb on - strandat 897.798 kb on + strandat 897.812 kb on - strandat 897.822 kb on - strandat 897.823 kb on + strandat 897.824 kb on - strandat 897.824 kb on - strandat 897.824 kb on - strandat 897.824 kb on - strandat 897.824 kb on - strandat 897.884 kb on + strandat 897.884 kb on + strandat 897.884 kb on + strandat 897.884 kb on + strandat 897.885 kb on - strandat 897.885 kb on - strandat 897.885 kb on - strandat 897.885 kb on - strandat 897.934 kb on + strandat 897.934 kb on + strandat 897.934 kb on + strandat 897.935 kb on - strandat 897.935 kb on - strandat 897.935 kb on - strandat 897.935 kb on - strandat 897.935 kb on - strandat 897.935 kb on - strandat 897.935 kb on - strandat 897.942 kb on - strandat 897.942 kb on - strandat 897.942 kb on - strandat 898.130 kb on + strand, within Pf1N1B4_788at 898.130 kb on + strand, within Pf1N1B4_788at 898.130 kb on + strand, within Pf1N1B4_788at 898.131 kb on - strand, within Pf1N1B4_788at 898.131 kb on - strand, within Pf1N1B4_788at 898.131 kb on - strand, within Pf1N1B4_788at 898.176 kb on - strand, within Pf1N1B4_788at 898.191 kb on - strand, within Pf1N1B4_788at 898.202 kb on + strand, within Pf1N1B4_788at 898.202 kb on + strand, within Pf1N1B4_788at 898.202 kb on + strand, within Pf1N1B4_788at 898.202 kb on + strand, within Pf1N1B4_788at 898.202 kb on + strand, within Pf1N1B4_788at 898.202 kb on + strandat 898.203 kb on - strand, within Pf1N1B4_788at 898.203 kb on - strand, within Pf1N1B4_788at 898.203 kb on - strand, within Pf1N1B4_788

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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895,606 + Pf1N1B4_784 0.81 +0.0
895,606 + Pf1N1B4_784 0.81 -2.2
895,606 + -2.4
895,606 + Pf1N1B4_784 0.81 +0.0
895,606 + Pf1N1B4_784 0.81 -1.9
895,606 + Pf1N1B4_784 0.81 +0.0
895,606 + Pf1N1B4_784 0.81 -1.7
895,607 - Pf1N1B4_784 0.81 -2.8
895,607 - Pf1N1B4_784 0.81 +0.0
895,607 - Pf1N1B4_784 0.81 +0.0
895,607 - Pf1N1B4_784 0.81 +0.0
895,607 - Pf1N1B4_784 0.81 -3.7
895,607 - +0.0
895,607 - Pf1N1B4_784 0.81 -4.4
895,607 - Pf1N1B4_784 0.81 +0.0
895,607 - +0.0
895,621 + Pf1N1B4_784 0.83 +0.0
895,621 + Pf1N1B4_784 0.83 +0.0
895,622 - Pf1N1B4_784 0.83 +0.0
895,670 - Pf1N1B4_784 0.88 +0.0
895,705 + +0.0
895,706 - -1.8
895,854 + +0.0
895,854 + +0.0
895,854 + +0.0
895,855 - +0.0
895,863 + +0.0
895,863 + -1.6
895,863 + +0.0
895,863 + -2.0
895,863 + -2.3
895,863 + +0.0
895,863 + +0.0
895,863 + -2.1
895,863 + +0.0
895,864 - -4.4
895,961 + +0.0
895,961 + +0.0
895,962 - +0.0
896,114 + Pf1N1B4_785 0.10 -3.1
896,115 - Pf1N1B4_785 0.10 +0.0
896,178 - Pf1N1B4_785 0.22 +0.0
896,178 - Pf1N1B4_785 0.22 +0.0
896,316 - Pf1N1B4_785 0.49 +0.0
896,316 - Pf1N1B4_785 0.49 +0.0
896,316 - Pf1N1B4_785 0.49 +0.0
896,416 + Pf1N1B4_785 0.69 -1.9
896,417 - Pf1N1B4_785 0.69 +0.0
896,417 - Pf1N1B4_785 0.69 -2.0
896,417 - Pf1N1B4_785 0.69 -0.5
896,646 + Pf1N1B4_786 0.10 -3.0
896,647 - Pf1N1B4_786 0.11 -4.6
896,647 - Pf1N1B4_786 0.11 +0.0
896,970 + +0.0
897,063 - Pf1N1B4_786 0.76 +0.0
897,063 - Pf1N1B4_786 0.76 -2.6
897,138 + Pf1N1B4_786 0.87 +0.0
897,138 + Pf1N1B4_786 0.87 +0.0
897,138 + Pf1N1B4_786 0.87 +0.0
897,139 - Pf1N1B4_786 0.88 +0.0
897,139 - Pf1N1B4_786 0.88 -3.8
897,139 - Pf1N1B4_786 0.88 +0.0
897,164 + +0.0
897,281 - -1.7
897,281 - -2.6
897,409 + +0.0
897,410 - Pf1N1B4_787 0.39 -2.1
897,410 - Pf1N1B4_787 0.39 +0.0
897,746 + +0.0
897,747 - +0.0
897,765 - +0.0
897,798 + -2.6
897,812 - -2.1
897,822 - +0.0
897,823 + +0.0
897,824 - +0.0
897,824 - +0.0
897,824 - +0.0
897,824 - -3.9
897,824 - +0.0
897,884 + +0.0
897,884 + -1.4
897,884 + -0.4
897,884 + +0.0
897,885 - +0.0
897,885 - +0.0
897,885 - +0.0
897,885 - +0.0
897,934 + +0.0
897,934 + +0.0
897,934 + +0.0
897,935 - -1.6
897,935 - -1.6
897,935 - -1.6
897,935 - -3.5
897,935 - -1.8
897,935 - +0.0
897,935 - -1.7
897,942 - +0.0
897,942 - +0.0
897,942 - +0.0
898,130 + Pf1N1B4_788 0.18 +0.0
898,130 + Pf1N1B4_788 0.18 -1.3
898,130 + Pf1N1B4_788 0.18 +0.0
898,131 - Pf1N1B4_788 0.18 +0.0
898,131 - Pf1N1B4_788 0.18 +0.0
898,131 - Pf1N1B4_788 0.18 +0.0
898,176 - Pf1N1B4_788 0.22 -1.6
898,191 - Pf1N1B4_788 0.23 +0.0
898,202 + Pf1N1B4_788 0.23 +0.0
898,202 + Pf1N1B4_788 0.23 +0.0
898,202 + Pf1N1B4_788 0.23 +0.0
898,202 + Pf1N1B4_788 0.23 +0.0
898,202 + Pf1N1B4_788 0.23 +0.0
898,202 + +0.0
898,203 - Pf1N1B4_788 0.24 +0.0
898,203 - Pf1N1B4_788 0.24 +0.0
898,203 - Pf1N1B4_788 0.24 +0.0

Or see this region's nucleotide sequence