Experiment: Nitrate reduction
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_607 and Pf1N1B4_608 are separated by 109 nucleotides Pf1N1B4_608 and Pf1N1B4_609 are separated by 164 nucleotides Pf1N1B4_609 and Pf1N1B4_610 are separated by 177 nucleotides
Pf1N1B4_607 - TonB-dependent hemin , ferrichrome receptor, at 699,251 to 701,812
_607
Pf1N1B4_608 - Heme oxygenase HemO, associated with heme uptake, at 701,922 to 702,530
_608
Pf1N1B4_609 - FIG039061: hypothetical protein related to heme utilization, at 702,695 to 703,090
_609
Pf1N1B4_610 - Methyl-accepting chemotaxis transducer, at 703,268 to 705,406
_610
Position (kb) 702
703
704 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 702.075 kb on + strand, within Pf1N1B4_608 at 702.076 kb on - strand, within Pf1N1B4_608 at 702.076 kb on - strand, within Pf1N1B4_608 at 702.230 kb on + strand, within Pf1N1B4_608 at 702.487 kb on + strand at 702.487 kb on + strand at 702.488 kb on - strand at 702.504 kb on + strand at 702.604 kb on + strand at 702.682 kb on - strand at 702.741 kb on + strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 703.160 kb on + strand at 703.160 kb on + strand at 703.160 kb on + strand at 703.160 kb on + strand at 703.161 kb on - strand at 703.267 kb on + strand at 703.267 kb on + strand at 703.268 kb on - strand at 703.361 kb on + strand at 703.361 kb on + strand at 703.361 kb on + strand at 703.361 kb on + strand at 703.362 kb on - strand at 703.362 kb on - strand at 703.362 kb on - strand at 703.418 kb on - strand at 703.736 kb on + strand, within Pf1N1B4_610 at 703.736 kb on + strand, within Pf1N1B4_610 at 703.737 kb on - strand, within Pf1N1B4_610 at 703.737 kb on - strand, within Pf1N1B4_610 at 703.826 kb on + strand, within Pf1N1B4_610 at 703.826 kb on + strand, within Pf1N1B4_610 at 703.826 kb on + strand, within Pf1N1B4_610 at 703.826 kb on + strand, within Pf1N1B4_610 at 703.827 kb on - strand, within Pf1N1B4_610 at 703.827 kb on - strand, within Pf1N1B4_610 at 703.884 kb on - strand, within Pf1N1B4_610 at 704.073 kb on + strand, within Pf1N1B4_610 at 704.074 kb on - strand, within Pf1N1B4_610 at 704.084 kb on + strand, within Pf1N1B4_610
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction remove 702,075 + Pf1N1B4_608 0.25 +0.0 702,076 - Pf1N1B4_608 0.25 +0.0 702,076 - Pf1N1B4_608 0.25 +0.0 702,230 + Pf1N1B4_608 0.51 -1.9 702,487 + +0.0 702,487 + +0.0 702,488 - +0.0 702,504 + +0.0 702,604 + -1.9 702,682 - -1.8 702,741 + Pf1N1B4_609 0.12 +0.0 702,766 - Pf1N1B4_609 0.18 -2.1 702,766 - Pf1N1B4_609 0.18 -3.3 702,766 - Pf1N1B4_609 0.18 -4.0 702,766 - Pf1N1B4_609 0.18 +0.0 702,766 - +0.0 702,766 - Pf1N1B4_609 0.18 +0.0 702,766 - Pf1N1B4_609 0.18 +0.0 703,160 + +0.0 703,160 + -4.4 703,160 + +0.0 703,160 + +0.0 703,161 - +0.0 703,267 + +0.0 703,267 + +0.0 703,268 - +0.0 703,361 + -0.4 703,361 + +0.0 703,361 + +0.0 703,361 + +0.0 703,362 - +0.0 703,362 - +0.0 703,362 - +0.0 703,418 - +0.0 703,736 + Pf1N1B4_610 0.22 +0.0 703,736 + Pf1N1B4_610 0.22 -2.1 703,737 - Pf1N1B4_610 0.22 +0.0 703,737 - Pf1N1B4_610 0.22 +0.0 703,826 + Pf1N1B4_610 0.26 +0.0 703,826 + Pf1N1B4_610 0.26 +0.0 703,826 + Pf1N1B4_610 0.26 +0.0 703,826 + Pf1N1B4_610 0.26 -1.3 703,827 - Pf1N1B4_610 0.26 -1.4 703,827 - Pf1N1B4_610 0.26 +0.0 703,884 - Pf1N1B4_610 0.29 -2.7 704,073 + Pf1N1B4_610 0.38 +0.0 704,074 - Pf1N1B4_610 0.38 +0.0 704,084 + Pf1N1B4_610 0.38 -1.3
Or see this region's nucleotide sequence