Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5460

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5459 and Pf1N1B4_5460 are separated by 173 nucleotidesPf1N1B4_5460 and Pf1N1B4_5461 are separated by 307 nucleotides Pf1N1B4_5459 - possible integrase-like protein, at 205,846 to 206,937 _5459 Pf1N1B4_5460 - TolA protein, at 207,111 to 207,977 _5460 Pf1N1B4_5461 - hypothetical protein, at 208,285 to 208,695 _5461 Position (kb) 207 208Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 206.169 kb on + strand, within Pf1N1B4_5459at 206.169 kb on + strand, within Pf1N1B4_5459at 206.169 kb on + strand, within Pf1N1B4_5459at 206.170 kb on - strand, within Pf1N1B4_5459at 206.170 kb on - strand, within Pf1N1B4_5459at 206.170 kb on - strand, within Pf1N1B4_5459at 206.170 kb on - strandat 206.270 kb on + strand, within Pf1N1B4_5459at 206.270 kb on + strand, within Pf1N1B4_5459at 206.317 kb on - strand, within Pf1N1B4_5459at 206.317 kb on - strand, within Pf1N1B4_5459at 206.317 kb on - strand, within Pf1N1B4_5459at 206.317 kb on - strand, within Pf1N1B4_5459at 206.379 kb on + strand, within Pf1N1B4_5459at 206.379 kb on + strand, within Pf1N1B4_5459at 206.381 kb on + strand, within Pf1N1B4_5459at 206.381 kb on + strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.404 kb on + strand, within Pf1N1B4_5459at 206.405 kb on - strand, within Pf1N1B4_5459at 206.405 kb on - strand, within Pf1N1B4_5459at 206.456 kb on - strand, within Pf1N1B4_5459at 206.456 kb on - strand, within Pf1N1B4_5459at 206.505 kb on + strandat 206.555 kb on + strand, within Pf1N1B4_5459at 206.575 kb on - strand, within Pf1N1B4_5459at 206.656 kb on - strand, within Pf1N1B4_5459at 206.703 kb on + strand, within Pf1N1B4_5459at 206.704 kb on - strand, within Pf1N1B4_5459at 206.704 kb on - strand, within Pf1N1B4_5459at 206.704 kb on - strand, within Pf1N1B4_5459at 206.704 kb on - strand, within Pf1N1B4_5459at 206.704 kb on - strand, within Pf1N1B4_5459at 206.720 kb on + strand, within Pf1N1B4_5459at 206.721 kb on - strand, within Pf1N1B4_5459at 206.721 kb on - strand, within Pf1N1B4_5459at 206.721 kb on - strand, within Pf1N1B4_5459at 206.721 kb on - strand, within Pf1N1B4_5459at 206.744 kb on + strandat 206.744 kb on + strand, within Pf1N1B4_5459at 206.744 kb on + strand, within Pf1N1B4_5459at 206.745 kb on - strand, within Pf1N1B4_5459at 206.819 kb on + strandat 206.832 kb on + strandat 206.832 kb on + strandat 206.833 kb on - strandat 206.859 kb on - strandat 206.859 kb on - strandat 206.859 kb on - strandat 206.859 kb on - strandat 206.859 kb on - strandat 206.859 kb on - strandat 206.938 kb on - strandat 206.938 kb on - strandat 207.013 kb on + strandat 207.013 kb on + strandat 207.014 kb on - strandat 207.014 kb on - strandat 207.014 kb on - strandat 207.014 kb on - strandat 207.050 kb on - strandat 207.194 kb on + strandat 207.195 kb on - strandat 207.195 kb on - strandat 207.195 kb on - strandat 207.245 kb on + strand, within Pf1N1B4_5460at 207.246 kb on - strandat 207.515 kb on + strand, within Pf1N1B4_5460at 207.516 kb on - strand, within Pf1N1B4_5460at 207.935 kb on + strandat 208.050 kb on + strandat 208.051 kb on - strandat 208.051 kb on - strandat 208.051 kb on - strandat 208.051 kb on - strandat 208.070 kb on + strandat 208.071 kb on - strandat 208.071 kb on - strandat 208.071 kb on - strandat 208.071 kb on - strandat 208.071 kb on - strandat 208.273 kb on - strandat 208.276 kb on + strandat 208.276 kb on + strandat 208.324 kb on + strandat 208.324 kb on + strandat 208.325 kb on - strandat 208.325 kb on - strandat 208.377 kb on - strand, within Pf1N1B4_5461at 208.377 kb on - strand, within Pf1N1B4_5461at 208.377 kb on - strand, within Pf1N1B4_5461at 208.377 kb on - strand, within Pf1N1B4_5461at 208.411 kb on + strand, within Pf1N1B4_5461at 208.412 kb on - strand, within Pf1N1B4_5461at 208.526 kb on - strand, within Pf1N1B4_5461at 208.553 kb on - strand, within Pf1N1B4_5461at 208.553 kb on - strand, within Pf1N1B4_5461at 208.557 kb on - strand, within Pf1N1B4_5461at 208.557 kb on - strand, within Pf1N1B4_5461at 208.618 kb on - strandat 208.667 kb on + strandat 208.668 kb on - strandat 208.726 kb on + strandat 208.727 kb on - strandat 208.727 kb on - strandat 208.727 kb on - strandat 208.727 kb on - strandat 208.918 kb on + strandat 208.918 kb on + strandat 208.933 kb on - strandat 208.933 kb on - strandat 208.972 kb on - strandat 208.972 kb on - strandat 208.972 kb on - strandat 208.975 kb on + strandat 208.976 kb on - strandat 208.976 kb on - strandat 208.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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206,169 + Pf1N1B4_5459 0.30 -1.4
206,169 + Pf1N1B4_5459 0.30 -0.1
206,169 + Pf1N1B4_5459 0.30 -0.1
206,170 - Pf1N1B4_5459 0.30 -0.1
206,170 - Pf1N1B4_5459 0.30 -0.1
206,170 - Pf1N1B4_5459 0.30 -0.1
206,170 - -0.1
206,270 + Pf1N1B4_5459 0.39 -2.0
206,270 + Pf1N1B4_5459 0.39 -1.5
206,317 - Pf1N1B4_5459 0.43 -1.3
206,317 - Pf1N1B4_5459 0.43 -1.0
206,317 - Pf1N1B4_5459 0.43 -0.1
206,317 - Pf1N1B4_5459 0.43 -0.1
206,379 + Pf1N1B4_5459 0.49 -0.1
206,379 + Pf1N1B4_5459 0.49 -1.2
206,381 + Pf1N1B4_5459 0.49 -0.1
206,381 + Pf1N1B4_5459 0.49 -0.1
206,382 - Pf1N1B4_5459 0.49 -0.1
206,382 - Pf1N1B4_5459 0.49 -0.1
206,382 - Pf1N1B4_5459 0.49 -0.1
206,382 - Pf1N1B4_5459 0.49 -0.1
206,382 - Pf1N1B4_5459 0.49 -4.0
206,382 - Pf1N1B4_5459 0.49 -0.1
206,404 + Pf1N1B4_5459 0.51 -2.2
206,405 - Pf1N1B4_5459 0.51 -2.2
206,405 - Pf1N1B4_5459 0.51 -0.1
206,456 - Pf1N1B4_5459 0.56 -0.1
206,456 - Pf1N1B4_5459 0.56 -0.1
206,505 + -1.1
206,555 + Pf1N1B4_5459 0.65 -0.1
206,575 - Pf1N1B4_5459 0.67 -0.1
206,656 - Pf1N1B4_5459 0.74 -1.3
206,703 + Pf1N1B4_5459 0.78 -1.8
206,704 - Pf1N1B4_5459 0.79 -2.7
206,704 - Pf1N1B4_5459 0.79 -0.1
206,704 - Pf1N1B4_5459 0.79 -0.1
206,704 - Pf1N1B4_5459 0.79 -2.9
206,704 - Pf1N1B4_5459 0.79 -0.1
206,720 + Pf1N1B4_5459 0.80 -0.1
206,721 - Pf1N1B4_5459 0.80 -2.0
206,721 - Pf1N1B4_5459 0.80 -0.1
206,721 - Pf1N1B4_5459 0.80 -0.1
206,721 - Pf1N1B4_5459 0.80 -1.2
206,744 + -0.1
206,744 + Pf1N1B4_5459 0.82 -0.1
206,744 + Pf1N1B4_5459 0.82 -1.0
206,745 - Pf1N1B4_5459 0.82 -3.8
206,819 + -3.6
206,832 + -0.1
206,832 + -0.1
206,833 - -0.1
206,859 - -0.1
206,859 - -0.1
206,859 - -0.1
206,859 - -0.1
206,859 - -2.2
206,859 - -0.1
206,938 - -0.1
206,938 - -2.8
207,013 + -0.1
207,013 + -0.1
207,014 - -1.1
207,014 - +0.1
207,014 - -1.5
207,014 - -0.1
207,050 - -1.7
207,194 + -0.1
207,195 - -1.5
207,195 - -0.1
207,195 - -0.1
207,245 + Pf1N1B4_5460 0.15 -2.3
207,246 - -0.1
207,515 + Pf1N1B4_5460 0.47 -0.1
207,516 - Pf1N1B4_5460 0.47 -2.7
207,935 + +1.0
208,050 + -0.1
208,051 - -0.1
208,051 - -1.9
208,051 - -0.1
208,051 - -0.1
208,070 + -2.1
208,071 - -0.1
208,071 - -2.0
208,071 - -0.1
208,071 - -1.2
208,071 - -2.1
208,273 - -0.1
208,276 + -0.1
208,276 + -2.0
208,324 + -0.1
208,324 + -1.3
208,325 - -0.1
208,325 - -0.1
208,377 - Pf1N1B4_5461 0.22 -0.1
208,377 - Pf1N1B4_5461 0.22 -0.1
208,377 - Pf1N1B4_5461 0.22 -0.1
208,377 - Pf1N1B4_5461 0.22 -2.2
208,411 + Pf1N1B4_5461 0.31 -0.1
208,412 - Pf1N1B4_5461 0.31 -0.2
208,526 - Pf1N1B4_5461 0.59 -0.1
208,553 - Pf1N1B4_5461 0.65 -0.1
208,553 - Pf1N1B4_5461 0.65 -1.8
208,557 - Pf1N1B4_5461 0.66 -0.1
208,557 - Pf1N1B4_5461 0.66 -1.0
208,618 - -0.1
208,667 + -0.1
208,668 - -0.1
208,726 + -3.2
208,727 - -0.1
208,727 - -0.1
208,727 - -1.9
208,727 - -0.1
208,918 + -1.8
208,918 + -0.1
208,933 - -1.5
208,933 - -0.1
208,972 - -2.5
208,972 - -0.1
208,972 - -1.6
208,975 + -0.1
208,976 - -1.0
208,976 - -0.1
208,976 - -0.1

Or see this region's nucleotide sequence