Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4948

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4947 and Pf1N1B4_4948 are separated by 0 nucleotidesPf1N1B4_4948 and Pf1N1B4_4949 overlap by 4 nucleotidesPf1N1B4_4949 and Pf1N1B4_4950 are separated by 4 nucleotides Pf1N1B4_4947 - Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing, at 5,481,979 to 5,485,044 _4947 Pf1N1B4_4948 - Formate dehydrogenase O beta subunit (EC 1.2.1.2), at 5,485,045 to 5,485,989 _4948 Pf1N1B4_4949 - Formate dehydrogenase N gamma subunit (EC 1.2.1.2), at 5,485,986 to 5,486,639 _4949 Pf1N1B4_4950 - formate dehydrogenase formation protein FdhE, at 5,486,644 to 5,487,570 _4950 Position (kb) 5485 5486Strain fitness (log2 ratio) -3 -2 -1 0 1at 5484.319 kb on + strand, within Pf1N1B4_4947at 5484.536 kb on - strand, within Pf1N1B4_4947at 5484.536 kb on - strand, within Pf1N1B4_4947at 5484.536 kb on - strand, within Pf1N1B4_4947at 5484.665 kb on - strand, within Pf1N1B4_4947at 5485.043 kb on - strandat 5485.226 kb on - strand, within Pf1N1B4_4948at 5485.254 kb on + strandat 5485.254 kb on + strandat 5485.504 kb on + strand, within Pf1N1B4_4948at 5485.506 kb on + strand, within Pf1N1B4_4948at 5485.506 kb on + strand, within Pf1N1B4_4948at 5485.506 kb on + strand, within Pf1N1B4_4948at 5485.507 kb on - strand, within Pf1N1B4_4948at 5485.507 kb on - strand, within Pf1N1B4_4948at 5485.507 kb on - strand, within Pf1N1B4_4948at 5485.629 kb on + strand, within Pf1N1B4_4948at 5485.670 kb on + strand, within Pf1N1B4_4948at 5485.671 kb on - strand, within Pf1N1B4_4948at 5485.672 kb on + strand, within Pf1N1B4_4948at 5485.673 kb on - strand, within Pf1N1B4_4948at 5485.673 kb on - strandat 5485.673 kb on - strand, within Pf1N1B4_4948at 5485.708 kb on + strand, within Pf1N1B4_4948at 5485.708 kb on + strand, within Pf1N1B4_4948at 5485.708 kb on + strand, within Pf1N1B4_4948at 5485.708 kb on + strand, within Pf1N1B4_4948at 5485.708 kb on + strand, within Pf1N1B4_4948at 5485.708 kb on + strandat 5485.709 kb on - strand, within Pf1N1B4_4948at 5485.709 kb on - strandat 5485.709 kb on - strandat 5485.709 kb on - strand, within Pf1N1B4_4948at 5485.858 kb on + strand, within Pf1N1B4_4948at 5485.859 kb on - strand, within Pf1N1B4_4948at 5485.859 kb on - strand, within Pf1N1B4_4948at 5485.859 kb on - strand, within Pf1N1B4_4948at 5486.011 kb on - strandat 5486.011 kb on - strandat 5486.157 kb on + strandat 5486.157 kb on + strand, within Pf1N1B4_4949at 5486.158 kb on - strand, within Pf1N1B4_4949at 5486.158 kb on - strand, within Pf1N1B4_4949at 5486.221 kb on - strand, within Pf1N1B4_4949at 5486.221 kb on - strand, within Pf1N1B4_4949at 5486.221 kb on - strand, within Pf1N1B4_4949at 5486.307 kb on + strand, within Pf1N1B4_4949at 5486.493 kb on + strand, within Pf1N1B4_4949at 5486.493 kb on + strand, within Pf1N1B4_4949at 5486.493 kb on + strand, within Pf1N1B4_4949at 5486.672 kb on + strandat 5486.672 kb on + strandat 5486.783 kb on - strand, within Pf1N1B4_4950at 5486.783 kb on - strand, within Pf1N1B4_4950

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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5,484,319 + Pf1N1B4_4947 0.76 -1.7
5,484,536 - Pf1N1B4_4947 0.83 -0.1
5,484,536 - Pf1N1B4_4947 0.83 -0.1
5,484,536 - Pf1N1B4_4947 0.83 -0.6
5,484,665 - Pf1N1B4_4947 0.88 -0.1
5,485,043 - -2.3
5,485,226 - Pf1N1B4_4948 0.19 -2.7
5,485,254 + -0.1
5,485,254 + -1.4
5,485,504 + Pf1N1B4_4948 0.49 -0.1
5,485,506 + Pf1N1B4_4948 0.49 -0.1
5,485,506 + Pf1N1B4_4948 0.49 -1.8
5,485,506 + Pf1N1B4_4948 0.49 -0.1
5,485,507 - Pf1N1B4_4948 0.49 -0.7
5,485,507 - Pf1N1B4_4948 0.49 -0.1
5,485,507 - Pf1N1B4_4948 0.49 -0.1
5,485,629 + Pf1N1B4_4948 0.62 -2.9
5,485,670 + Pf1N1B4_4948 0.66 -0.1
5,485,671 - Pf1N1B4_4948 0.66 -1.2
5,485,672 + Pf1N1B4_4948 0.66 -1.9
5,485,673 - Pf1N1B4_4948 0.66 -2.4
5,485,673 - -2.4
5,485,673 - Pf1N1B4_4948 0.66 +1.4
5,485,708 + Pf1N1B4_4948 0.70 -0.1
5,485,708 + Pf1N1B4_4948 0.70 -0.1
5,485,708 + Pf1N1B4_4948 0.70 -0.1
5,485,708 + Pf1N1B4_4948 0.70 -1.6
5,485,708 + Pf1N1B4_4948 0.70 -0.1
5,485,708 + -0.1
5,485,709 - Pf1N1B4_4948 0.70 -0.1
5,485,709 - -2.8
5,485,709 - -2.8
5,485,709 - Pf1N1B4_4948 0.70 -0.1
5,485,858 + Pf1N1B4_4948 0.86 -1.2
5,485,859 - Pf1N1B4_4948 0.86 -1.1
5,485,859 - Pf1N1B4_4948 0.86 -0.1
5,485,859 - Pf1N1B4_4948 0.86 -0.1
5,486,011 - -0.1
5,486,011 - -0.5
5,486,157 + -0.1
5,486,157 + Pf1N1B4_4949 0.26 -0.1
5,486,158 - Pf1N1B4_4949 0.26 -0.1
5,486,158 - Pf1N1B4_4949 0.26 -3.3
5,486,221 - Pf1N1B4_4949 0.36 -0.9
5,486,221 - Pf1N1B4_4949 0.36 -0.1
5,486,221 - Pf1N1B4_4949 0.36 -0.1
5,486,307 + Pf1N1B4_4949 0.49 -0.1
5,486,493 + Pf1N1B4_4949 0.78 -0.1
5,486,493 + Pf1N1B4_4949 0.78 -0.1
5,486,493 + Pf1N1B4_4949 0.78 -0.1
5,486,672 + -1.2
5,486,672 + -0.1
5,486,783 - Pf1N1B4_4950 0.15 -0.1
5,486,783 - Pf1N1B4_4950 0.15 -0.1

Or see this region's nucleotide sequence