Experiment: Nitrate reduction
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_416 and Pf1N1B4_417 are separated by 16 nucleotides Pf1N1B4_417 and Pf1N1B4_418 are separated by 216 nucleotides Pf1N1B4_418 and Pf1N1B4_419 are separated by 139 nucleotides
Pf1N1B4_416 - FIG003620: Proteophosphoglycan precursor (Fragment), at 485,529 to 486,089
_416
Pf1N1B4_417 - lipoprotein, putative, at 486,106 to 486,711
_417
Pf1N1B4_418 - Molybdenum cofactor biosynthesis protein MoaA, at 486,928 to 487,896
_418
Pf1N1B4_419 - Transcriptional regulator, TetR family, at 488,036 to 488,674
_419
Position (kb) 486
487
488 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 485.953 kb on + strand, within Pf1N1B4_416 at 485.953 kb on + strand, within Pf1N1B4_416 at 485.954 kb on - strand, within Pf1N1B4_416 at 485.954 kb on - strand, within Pf1N1B4_416 at 485.954 kb on - strand, within Pf1N1B4_416 at 485.956 kb on + strand at 485.956 kb on + strand, within Pf1N1B4_416 at 485.957 kb on - strand, within Pf1N1B4_416 at 485.957 kb on - strand, within Pf1N1B4_416 at 485.957 kb on - strand, within Pf1N1B4_416 at 485.957 kb on - strand, within Pf1N1B4_416 at 486.107 kb on + strand at 486.108 kb on - strand at 486.141 kb on - strand at 486.196 kb on + strand, within Pf1N1B4_417 at 486.216 kb on + strand, within Pf1N1B4_417 at 486.216 kb on + strand, within Pf1N1B4_417 at 486.216 kb on + strand, within Pf1N1B4_417 at 486.217 kb on - strand, within Pf1N1B4_417 at 486.226 kb on - strand, within Pf1N1B4_417 at 486.236 kb on + strand, within Pf1N1B4_417 at 486.365 kb on + strand, within Pf1N1B4_417 at 486.365 kb on + strand, within Pf1N1B4_417 at 486.365 kb on + strand at 486.365 kb on + strand, within Pf1N1B4_417 at 486.374 kb on + strand, within Pf1N1B4_417 at 486.455 kb on + strand, within Pf1N1B4_417 at 486.455 kb on + strand, within Pf1N1B4_417 at 486.456 kb on - strand, within Pf1N1B4_417 at 486.495 kb on + strand, within Pf1N1B4_417 at 486.495 kb on + strand, within Pf1N1B4_417 at 486.496 kb on - strand, within Pf1N1B4_417 at 486.496 kb on - strand, within Pf1N1B4_417 at 486.545 kb on + strand, within Pf1N1B4_417 at 486.545 kb on + strand, within Pf1N1B4_417 at 486.545 kb on + strand, within Pf1N1B4_417 at 486.545 kb on + strand, within Pf1N1B4_417 at 486.549 kb on + strand, within Pf1N1B4_417 at 486.550 kb on - strand, within Pf1N1B4_417 at 486.576 kb on + strand, within Pf1N1B4_417 at 486.714 kb on + strand at 486.715 kb on - strand at 486.715 kb on - strand at 486.783 kb on + strand at 486.784 kb on - strand at 486.784 kb on - strand at 486.784 kb on - strand at 486.940 kb on - strand at 486.940 kb on - strand at 487.045 kb on - strand, within Pf1N1B4_418 at 487.064 kb on + strand, within Pf1N1B4_418 at 487.064 kb on + strand, within Pf1N1B4_418 at 487.064 kb on + strand, within Pf1N1B4_418 at 487.064 kb on + strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.108 kb on - strand, within Pf1N1B4_418 at 487.120 kb on + strand, within Pf1N1B4_418 at 487.238 kb on + strand, within Pf1N1B4_418 at 487.239 kb on - strand, within Pf1N1B4_418 at 487.239 kb on - strand, within Pf1N1B4_418 at 487.351 kb on + strand, within Pf1N1B4_418 at 487.351 kb on + strand, within Pf1N1B4_418 at 487.352 kb on - strand, within Pf1N1B4_418 at 487.394 kb on - strand, within Pf1N1B4_418 at 487.732 kb on + strand, within Pf1N1B4_418 at 487.732 kb on + strand, within Pf1N1B4_418 at 487.739 kb on + strand, within Pf1N1B4_418 at 487.739 kb on + strand, within Pf1N1B4_418 at 487.740 kb on - strand, within Pf1N1B4_418 at 487.817 kb on + strand at 487.817 kb on + strand at 487.817 kb on + strand at 487.817 kb on + strand at 487.818 kb on - strand at 487.818 kb on - strand at 487.818 kb on - strand at 487.821 kb on + strand at 487.821 kb on + strand at 487.821 kb on + strand at 487.821 kb on + strand at 487.822 kb on - strand at 487.822 kb on - strand at 487.822 kb on - strand at 487.822 kb on - strand at 487.822 kb on - strand at 487.829 kb on + strand at 487.829 kb on + strand at 487.829 kb on + strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.955 kb on + strand at 487.965 kb on + strand at 487.975 kb on + strand at 487.975 kb on + strand at 487.975 kb on + strand at 487.976 kb on - strand at 487.978 kb on - strand at 487.978 kb on - strand at 487.978 kb on - strand at 487.989 kb on - strand at 488.001 kb on - strand at 488.001 kb on - strand at 488.004 kb on + strand at 488.004 kb on + strand at 488.004 kb on + strand at 488.005 kb on - strand at 488.005 kb on - strand at 488.005 kb on - strand at 488.005 kb on - strand at 488.157 kb on + strand, within Pf1N1B4_419 at 488.158 kb on - strand, within Pf1N1B4_419 at 488.208 kb on + strand, within Pf1N1B4_419 at 488.209 kb on - strand, within Pf1N1B4_419 at 488.209 kb on - strand at 488.493 kb on + strand, within Pf1N1B4_419 at 488.494 kb on - strand, within Pf1N1B4_419 at 488.494 kb on - strand, within Pf1N1B4_419 at 488.494 kb on - strand, within Pf1N1B4_419 at 488.669 kb on - strand at 488.674 kb on + strand at 488.674 kb on + strand at 488.712 kb on + strand at 488.712 kb on + strand at 488.713 kb on - strand at 488.713 kb on - strand at 488.755 kb on + strand at 488.755 kb on + strand at 488.755 kb on + strand at 488.756 kb on - strand at 488.756 kb on - strand at 488.756 kb on - strand at 488.756 kb on - strand at 488.836 kb on - strand at 488.851 kb on + strand at 488.851 kb on + strand at 488.870 kb on + strand at 488.880 kb on + strand at 488.880 kb on + strand at 488.880 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction remove 485,953 + Pf1N1B4_416 0.76 -0.0 485,953 + Pf1N1B4_416 0.76 -4.4 485,954 - Pf1N1B4_416 0.76 -0.0 485,954 - Pf1N1B4_416 0.76 -0.0 485,954 - Pf1N1B4_416 0.76 -0.0 485,956 + -0.0 485,956 + Pf1N1B4_416 0.76 -0.1 485,957 - Pf1N1B4_416 0.76 -1.5 485,957 - Pf1N1B4_416 0.76 -0.0 485,957 - Pf1N1B4_416 0.76 -0.0 485,957 - Pf1N1B4_416 0.76 -1.3 486,107 + -0.0 486,108 - -0.0 486,141 - -0.0 486,196 + Pf1N1B4_417 0.15 -0.0 486,216 + Pf1N1B4_417 0.18 -2.0 486,216 + Pf1N1B4_417 0.18 -0.0 486,216 + Pf1N1B4_417 0.18 -0.0 486,217 - Pf1N1B4_417 0.18 -1.4 486,226 - Pf1N1B4_417 0.20 -0.0 486,236 + Pf1N1B4_417 0.21 -2.6 486,365 + Pf1N1B4_417 0.43 -0.0 486,365 + Pf1N1B4_417 0.43 -0.0 486,365 + -0.0 486,365 + Pf1N1B4_417 0.43 -1.9 486,374 + Pf1N1B4_417 0.44 -0.0 486,455 + Pf1N1B4_417 0.58 -0.0 486,455 + Pf1N1B4_417 0.58 -2.0 486,456 - Pf1N1B4_417 0.58 -0.0 486,495 + Pf1N1B4_417 0.64 -0.0 486,495 + Pf1N1B4_417 0.64 -0.0 486,496 - Pf1N1B4_417 0.64 -0.0 486,496 - Pf1N1B4_417 0.64 -0.0 486,545 + Pf1N1B4_417 0.72 -0.0 486,545 + Pf1N1B4_417 0.72 -0.0 486,545 + Pf1N1B4_417 0.72 -0.0 486,545 + Pf1N1B4_417 0.72 -0.0 486,549 + Pf1N1B4_417 0.73 -0.0 486,550 - Pf1N1B4_417 0.73 -0.0 486,576 + Pf1N1B4_417 0.78 -0.0 486,714 + -0.0 486,715 - -1.9 486,715 - -0.0 486,783 + -2.9 486,784 - -0.7 486,784 - -2.0 486,784 - -0.0 486,940 - -1.7 486,940 - -0.0 487,045 - Pf1N1B4_418 0.12 -2.9 487,064 + Pf1N1B4_418 0.14 -3.6 487,064 + Pf1N1B4_418 0.14 -3.3 487,064 + Pf1N1B4_418 0.14 -2.0 487,064 + Pf1N1B4_418 0.14 -2.1 487,065 - Pf1N1B4_418 0.14 -0.0 487,065 - Pf1N1B4_418 0.14 -0.0 487,065 - Pf1N1B4_418 0.14 -0.0 487,065 - Pf1N1B4_418 0.14 -0.0 487,065 - Pf1N1B4_418 0.14 -3.6 487,065 - Pf1N1B4_418 0.14 -0.0 487,108 - Pf1N1B4_418 0.19 -3.6 487,120 + Pf1N1B4_418 0.20 -0.0 487,238 + Pf1N1B4_418 0.32 -3.6 487,239 - Pf1N1B4_418 0.32 -3.0 487,239 - Pf1N1B4_418 0.32 -0.0 487,351 + Pf1N1B4_418 0.44 -2.0 487,351 + Pf1N1B4_418 0.44 -4.1 487,352 - Pf1N1B4_418 0.44 -0.0 487,394 - Pf1N1B4_418 0.48 -0.0 487,732 + Pf1N1B4_418 0.83 -0.0 487,732 + Pf1N1B4_418 0.83 -2.9 487,739 + Pf1N1B4_418 0.84 -0.0 487,739 + Pf1N1B4_418 0.84 -0.0 487,740 - Pf1N1B4_418 0.84 -0.0 487,817 + -2.4 487,817 + -0.0 487,817 + -2.8 487,817 + -0.0 487,818 - -0.0 487,818 - -0.0 487,818 - -5.2 487,821 + -0.0 487,821 + -3.4 487,821 + -0.0 487,821 + -2.0 487,822 - -0.9 487,822 - -0.0 487,822 - -0.0 487,822 - -0.0 487,822 - -1.3 487,829 + -3.7 487,829 + -2.1 487,829 + -3.5 487,830 - -0.0 487,830 - -2.2 487,830 - -0.0 487,830 - -0.0 487,830 - -0.0 487,830 - -0.0 487,830 - -0.0 487,955 + -0.0 487,965 + -0.0 487,975 + -1.9 487,975 + -1.5 487,975 + -1.8 487,976 - -0.0 487,978 - -0.0 487,978 - -0.0 487,978 - -0.0 487,989 - -2.0 488,001 - -0.0 488,001 - -0.0 488,004 + -0.0 488,004 + -0.0 488,004 + -0.0 488,005 - -0.0 488,005 - -0.7 488,005 - -0.0 488,005 - -4.2 488,157 + Pf1N1B4_419 0.19 -0.0 488,158 - Pf1N1B4_419 0.19 -0.0 488,208 + Pf1N1B4_419 0.27 -0.0 488,209 - Pf1N1B4_419 0.27 -0.0 488,209 - -0.0 488,493 + Pf1N1B4_419 0.72 -0.0 488,494 - Pf1N1B4_419 0.72 -0.0 488,494 - Pf1N1B4_419 0.72 -0.0 488,494 - Pf1N1B4_419 0.72 -0.0 488,669 - -0.0 488,674 + -0.0 488,674 + -0.0 488,712 + -0.0 488,712 + -0.0 488,713 - -0.0 488,713 - -2.5 488,755 + -0.0 488,755 + -0.0 488,755 + -0.0 488,756 - -1.4 488,756 - -2.8 488,756 - -0.0 488,756 - -0.0 488,836 - -0.0 488,851 + -3.9 488,851 + -3.2 488,870 + -2.6 488,880 + -4.5 488,880 + -2.7 488,880 + -2.9
Or see this region's nucleotide sequence