Experiment: Nitrate reduction
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3898 and Pf1N1B4_3899 are separated by 213 nucleotides Pf1N1B4_3899 and Pf1N1B4_3900 are separated by 192 nucleotides Pf1N1B4_3900 and Pf1N1B4_3901 are separated by 104 nucleotides
Pf1N1B4_3898 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 4,327,215 to 4,329,143
_3898
Pf1N1B4_3899 - COG0488: ATPase components of ABC transporters with duplicated ATPase domains, at 4,329,357 to 4,331,276
_3899
Pf1N1B4_3900 - Universal stress protein family COG0589, at 4,331,469 to 4,331,906
_3900
Pf1N1B4_3901 - FIG00953628: hypothetical protein, at 4,332,011 to 4,332,448
_3901
Position (kb)
4329
4330
4331
4332 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4328.563 kb on + strand at 4328.675 kb on + strand at 4328.675 kb on + strand, within Pf1N1B4_3898 at 4328.740 kb on + strand, within Pf1N1B4_3898 at 4328.740 kb on + strand, within Pf1N1B4_3898 at 4328.741 kb on - strand at 4328.788 kb on + strand, within Pf1N1B4_3898 at 4328.789 kb on - strand at 4328.789 kb on - strand, within Pf1N1B4_3898 at 4328.791 kb on + strand, within Pf1N1B4_3898 at 4328.791 kb on + strand, within Pf1N1B4_3898 at 4328.792 kb on - strand, within Pf1N1B4_3898 at 4328.792 kb on - strand, within Pf1N1B4_3898 at 4328.792 kb on - strand, within Pf1N1B4_3898 at 4328.792 kb on - strand, within Pf1N1B4_3898 at 4328.792 kb on - strand, within Pf1N1B4_3898 at 4328.944 kb on + strand, within Pf1N1B4_3898 at 4328.944 kb on + strand, within Pf1N1B4_3898 at 4328.945 kb on - strand, within Pf1N1B4_3898 at 4328.953 kb on + strand at 4328.953 kb on + strand at 4328.953 kb on + strand at 4328.953 kb on + strand at 4328.998 kb on + strand at 4328.998 kb on + strand at 4329.043 kb on + strand at 4329.046 kb on + strand at 4329.047 kb on - strand at 4329.101 kb on + strand at 4329.101 kb on + strand at 4329.101 kb on + strand at 4329.197 kb on + strand at 4329.197 kb on + strand at 4329.197 kb on + strand at 4329.203 kb on + strand at 4329.203 kb on + strand at 4329.203 kb on + strand at 4329.208 kb on + strand at 4329.208 kb on + strand at 4329.326 kb on + strand at 4329.326 kb on + strand at 4329.326 kb on + strand at 4329.326 kb on + strand at 4330.079 kb on + strand, within Pf1N1B4_3899 at 4330.507 kb on - strand, within Pf1N1B4_3899 at 4330.618 kb on - strand, within Pf1N1B4_3899 at 4330.906 kb on - strand, within Pf1N1B4_3899 at 4331.041 kb on + strand, within Pf1N1B4_3899 at 4331.073 kb on + strand, within Pf1N1B4_3899 at 4331.073 kb on + strand, within Pf1N1B4_3899 at 4331.074 kb on - strand, within Pf1N1B4_3899 at 4331.074 kb on - strand, within Pf1N1B4_3899 at 4331.345 kb on + strand at 4331.357 kb on + strand at 4331.357 kb on + strand at 4331.357 kb on + strand at 4331.357 kb on + strand at 4331.357 kb on + strand at 4331.357 kb on + strand at 4331.357 kb on + strand at 4331.358 kb on - strand at 4331.358 kb on - strand at 4331.358 kb on - strand at 4331.358 kb on - strand at 4331.358 kb on - strand at 4331.358 kb on - strand at 4331.408 kb on - strand at 4331.520 kb on + strand, within Pf1N1B4_3900 at 4331.520 kb on + strand, within Pf1N1B4_3900 at 4331.521 kb on - strand, within Pf1N1B4_3900 at 4331.521 kb on - strand at 4331.642 kb on - strand, within Pf1N1B4_3900 at 4331.657 kb on - strand, within Pf1N1B4_3900 at 4331.792 kb on + strand, within Pf1N1B4_3900 at 4331.792 kb on + strand, within Pf1N1B4_3900 at 4331.793 kb on - strand, within Pf1N1B4_3900 at 4331.793 kb on - strand, within Pf1N1B4_3900 at 4331.793 kb on - strand, within Pf1N1B4_3900 at 4331.877 kb on + strand at 4331.900 kb on - strand at 4331.939 kb on - strand at 4331.939 kb on - strand at 4331.939 kb on - strand at 4331.942 kb on + strand at 4331.942 kb on + strand at 4331.942 kb on + strand at 4331.943 kb on - strand at 4331.943 kb on - strand at 4331.943 kb on - strand at 4331.943 kb on - strand at 4331.943 kb on - strand at 4331.943 kb on - strand at 4331.943 kb on - strand at 4332.004 kb on + strand at 4332.005 kb on - strand at 4332.010 kb on + strand at 4332.010 kb on + strand at 4332.011 kb on - strand at 4332.011 kb on - strand at 4332.011 kb on - strand at 4332.011 kb on - strand at 4332.011 kb on - strand at 4332.011 kb on - strand at 4332.082 kb on + strand, within Pf1N1B4_3901 at 4332.082 kb on + strand, within Pf1N1B4_3901 at 4332.082 kb on + strand, within Pf1N1B4_3901
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction remove 4,328,563 + -2.8 4,328,675 + -0.0 4,328,675 + Pf1N1B4_3898 0.76 -0.8 4,328,740 + Pf1N1B4_3898 0.79 -0.0 4,328,740 + Pf1N1B4_3898 0.79 -0.0 4,328,741 - -0.0 4,328,788 + Pf1N1B4_3898 0.82 -0.0 4,328,789 - -0.0 4,328,789 - Pf1N1B4_3898 0.82 -0.0 4,328,791 + Pf1N1B4_3898 0.82 -1.0 4,328,791 + Pf1N1B4_3898 0.82 -2.1 4,328,792 - Pf1N1B4_3898 0.82 -2.6 4,328,792 - Pf1N1B4_3898 0.82 -0.0 4,328,792 - Pf1N1B4_3898 0.82 -0.0 4,328,792 - Pf1N1B4_3898 0.82 -0.0 4,328,792 - Pf1N1B4_3898 0.82 -4.3 4,328,944 + Pf1N1B4_3898 0.90 -1.6 4,328,944 + Pf1N1B4_3898 0.90 -0.7 4,328,945 - Pf1N1B4_3898 0.90 -0.0 4,328,953 + -0.2 4,328,953 + -2.9 4,328,953 + -0.0 4,328,953 + -0.0 4,328,998 + -0.0 4,328,998 + -0.8 4,329,043 + -3.0 4,329,046 + -0.0 4,329,047 - -0.0 4,329,101 + -0.0 4,329,101 + -0.0 4,329,101 + -0.0 4,329,197 + -0.0 4,329,197 + -1.2 4,329,197 + -0.0 4,329,203 + -2.4 4,329,203 + -0.0 4,329,203 + -1.3 4,329,208 + -1.4 4,329,208 + -0.0 4,329,326 + -0.0 4,329,326 + -0.0 4,329,326 + -0.0 4,329,326 + -3.3 4,330,079 + Pf1N1B4_3899 0.38 -2.6 4,330,507 - Pf1N1B4_3899 0.60 -0.0 4,330,618 - Pf1N1B4_3899 0.66 -0.0 4,330,906 - Pf1N1B4_3899 0.81 -3.0 4,331,041 + Pf1N1B4_3899 0.88 -0.0 4,331,073 + Pf1N1B4_3899 0.89 -0.0 4,331,073 + Pf1N1B4_3899 0.89 -0.0 4,331,074 - Pf1N1B4_3899 0.89 -0.0 4,331,074 - Pf1N1B4_3899 0.89 -3.0 4,331,345 + -0.0 4,331,357 + -1.0 4,331,357 + -0.0 4,331,357 + -0.0 4,331,357 + -1.6 4,331,357 + -0.0 4,331,357 + -0.0 4,331,357 + -4.4 4,331,358 - -0.0 4,331,358 - -0.0 4,331,358 - -0.0 4,331,358 - -1.6 4,331,358 - -3.5 4,331,358 - -1.6 4,331,408 - -0.0 4,331,520 + Pf1N1B4_3900 0.12 -0.0 4,331,520 + Pf1N1B4_3900 0.12 -0.0 4,331,521 - Pf1N1B4_3900 0.12 -2.4 4,331,521 - -0.0 4,331,642 - Pf1N1B4_3900 0.39 -0.0 4,331,657 - Pf1N1B4_3900 0.43 -0.0 4,331,792 + Pf1N1B4_3900 0.74 -0.0 4,331,792 + Pf1N1B4_3900 0.74 -3.3 4,331,793 - Pf1N1B4_3900 0.74 -3.2 4,331,793 - Pf1N1B4_3900 0.74 -0.0 4,331,793 - Pf1N1B4_3900 0.74 -2.4 4,331,877 + -1.2 4,331,900 - -1.9 4,331,939 - -0.0 4,331,939 - -0.0 4,331,939 - -0.0 4,331,942 + -0.0 4,331,942 + -1.3 4,331,942 + -0.3 4,331,943 - -0.0 4,331,943 - -0.0 4,331,943 - -0.0 4,331,943 - -0.0 4,331,943 - -3.4 4,331,943 - -0.0 4,331,943 - -0.0 4,332,004 + -0.0 4,332,005 - -0.0 4,332,010 + -0.0 4,332,010 + -1.9 4,332,011 - -0.0 4,332,011 - -1.1 4,332,011 - -0.0 4,332,011 - -0.0 4,332,011 - -1.0 4,332,011 - -0.0 4,332,082 + Pf1N1B4_3901 0.16 -0.0 4,332,082 + Pf1N1B4_3901 0.16 -0.0 4,332,082 + Pf1N1B4_3901 0.16 -0.0
Or see this region's nucleotide sequence