Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3899

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3898 and Pf1N1B4_3899 are separated by 213 nucleotidesPf1N1B4_3899 and Pf1N1B4_3900 are separated by 192 nucleotidesPf1N1B4_3900 and Pf1N1B4_3901 are separated by 104 nucleotides Pf1N1B4_3898 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 4,327,215 to 4,329,143 _3898 Pf1N1B4_3899 - COG0488: ATPase components of ABC transporters with duplicated ATPase domains, at 4,329,357 to 4,331,276 _3899 Pf1N1B4_3900 - Universal stress protein family COG0589, at 4,331,469 to 4,331,906 _3900 Pf1N1B4_3901 - FIG00953628: hypothetical protein, at 4,332,011 to 4,332,448 _3901 Position (kb) 4329 4330 4331 4332Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4328.563 kb on + strandat 4328.675 kb on + strandat 4328.675 kb on + strand, within Pf1N1B4_3898at 4328.740 kb on + strand, within Pf1N1B4_3898at 4328.740 kb on + strand, within Pf1N1B4_3898at 4328.741 kb on - strandat 4328.788 kb on + strand, within Pf1N1B4_3898at 4328.789 kb on - strandat 4328.789 kb on - strand, within Pf1N1B4_3898at 4328.791 kb on + strand, within Pf1N1B4_3898at 4328.791 kb on + strand, within Pf1N1B4_3898at 4328.792 kb on - strand, within Pf1N1B4_3898at 4328.792 kb on - strand, within Pf1N1B4_3898at 4328.792 kb on - strand, within Pf1N1B4_3898at 4328.792 kb on - strand, within Pf1N1B4_3898at 4328.792 kb on - strand, within Pf1N1B4_3898at 4328.944 kb on + strand, within Pf1N1B4_3898at 4328.944 kb on + strand, within Pf1N1B4_3898at 4328.945 kb on - strand, within Pf1N1B4_3898at 4328.953 kb on + strandat 4328.953 kb on + strandat 4328.953 kb on + strandat 4328.953 kb on + strandat 4328.998 kb on + strandat 4328.998 kb on + strandat 4329.043 kb on + strandat 4329.046 kb on + strandat 4329.047 kb on - strandat 4329.101 kb on + strandat 4329.101 kb on + strandat 4329.101 kb on + strandat 4329.197 kb on + strandat 4329.197 kb on + strandat 4329.197 kb on + strandat 4329.203 kb on + strandat 4329.203 kb on + strandat 4329.203 kb on + strandat 4329.208 kb on + strandat 4329.208 kb on + strandat 4329.326 kb on + strandat 4329.326 kb on + strandat 4329.326 kb on + strandat 4329.326 kb on + strandat 4330.079 kb on + strand, within Pf1N1B4_3899at 4330.507 kb on - strand, within Pf1N1B4_3899at 4330.618 kb on - strand, within Pf1N1B4_3899at 4330.906 kb on - strand, within Pf1N1B4_3899at 4331.041 kb on + strand, within Pf1N1B4_3899at 4331.073 kb on + strand, within Pf1N1B4_3899at 4331.073 kb on + strand, within Pf1N1B4_3899at 4331.074 kb on - strand, within Pf1N1B4_3899at 4331.074 kb on - strand, within Pf1N1B4_3899at 4331.345 kb on + strandat 4331.357 kb on + strandat 4331.357 kb on + strandat 4331.357 kb on + strandat 4331.357 kb on + strandat 4331.357 kb on + strandat 4331.357 kb on + strandat 4331.357 kb on + strandat 4331.358 kb on - strandat 4331.358 kb on - strandat 4331.358 kb on - strandat 4331.358 kb on - strandat 4331.358 kb on - strandat 4331.358 kb on - strandat 4331.408 kb on - strandat 4331.520 kb on + strand, within Pf1N1B4_3900at 4331.520 kb on + strand, within Pf1N1B4_3900at 4331.521 kb on - strand, within Pf1N1B4_3900at 4331.521 kb on - strandat 4331.642 kb on - strand, within Pf1N1B4_3900at 4331.657 kb on - strand, within Pf1N1B4_3900at 4331.792 kb on + strand, within Pf1N1B4_3900at 4331.792 kb on + strand, within Pf1N1B4_3900at 4331.793 kb on - strand, within Pf1N1B4_3900at 4331.793 kb on - strand, within Pf1N1B4_3900at 4331.793 kb on - strand, within Pf1N1B4_3900at 4331.877 kb on + strandat 4331.900 kb on - strandat 4331.939 kb on - strandat 4331.939 kb on - strandat 4331.939 kb on - strandat 4331.942 kb on + strandat 4331.942 kb on + strandat 4331.942 kb on + strandat 4331.943 kb on - strandat 4331.943 kb on - strandat 4331.943 kb on - strandat 4331.943 kb on - strandat 4331.943 kb on - strandat 4331.943 kb on - strandat 4331.943 kb on - strandat 4332.004 kb on + strandat 4332.005 kb on - strandat 4332.010 kb on + strandat 4332.010 kb on + strandat 4332.011 kb on - strandat 4332.011 kb on - strandat 4332.011 kb on - strandat 4332.011 kb on - strandat 4332.011 kb on - strandat 4332.011 kb on - strandat 4332.082 kb on + strand, within Pf1N1B4_3901at 4332.082 kb on + strand, within Pf1N1B4_3901at 4332.082 kb on + strand, within Pf1N1B4_3901

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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4,328,563 + -2.8
4,328,675 + -0.0
4,328,675 + Pf1N1B4_3898 0.76 -0.8
4,328,740 + Pf1N1B4_3898 0.79 -0.0
4,328,740 + Pf1N1B4_3898 0.79 -0.0
4,328,741 - -0.0
4,328,788 + Pf1N1B4_3898 0.82 -0.0
4,328,789 - -0.0
4,328,789 - Pf1N1B4_3898 0.82 -0.0
4,328,791 + Pf1N1B4_3898 0.82 -1.0
4,328,791 + Pf1N1B4_3898 0.82 -2.1
4,328,792 - Pf1N1B4_3898 0.82 -2.6
4,328,792 - Pf1N1B4_3898 0.82 -0.0
4,328,792 - Pf1N1B4_3898 0.82 -0.0
4,328,792 - Pf1N1B4_3898 0.82 -0.0
4,328,792 - Pf1N1B4_3898 0.82 -4.3
4,328,944 + Pf1N1B4_3898 0.90 -1.6
4,328,944 + Pf1N1B4_3898 0.90 -0.7
4,328,945 - Pf1N1B4_3898 0.90 -0.0
4,328,953 + -0.2
4,328,953 + -2.9
4,328,953 + -0.0
4,328,953 + -0.0
4,328,998 + -0.0
4,328,998 + -0.8
4,329,043 + -3.0
4,329,046 + -0.0
4,329,047 - -0.0
4,329,101 + -0.0
4,329,101 + -0.0
4,329,101 + -0.0
4,329,197 + -0.0
4,329,197 + -1.2
4,329,197 + -0.0
4,329,203 + -2.4
4,329,203 + -0.0
4,329,203 + -1.3
4,329,208 + -1.4
4,329,208 + -0.0
4,329,326 + -0.0
4,329,326 + -0.0
4,329,326 + -0.0
4,329,326 + -3.3
4,330,079 + Pf1N1B4_3899 0.38 -2.6
4,330,507 - Pf1N1B4_3899 0.60 -0.0
4,330,618 - Pf1N1B4_3899 0.66 -0.0
4,330,906 - Pf1N1B4_3899 0.81 -3.0
4,331,041 + Pf1N1B4_3899 0.88 -0.0
4,331,073 + Pf1N1B4_3899 0.89 -0.0
4,331,073 + Pf1N1B4_3899 0.89 -0.0
4,331,074 - Pf1N1B4_3899 0.89 -0.0
4,331,074 - Pf1N1B4_3899 0.89 -3.0
4,331,345 + -0.0
4,331,357 + -1.0
4,331,357 + -0.0
4,331,357 + -0.0
4,331,357 + -1.6
4,331,357 + -0.0
4,331,357 + -0.0
4,331,357 + -4.4
4,331,358 - -0.0
4,331,358 - -0.0
4,331,358 - -0.0
4,331,358 - -1.6
4,331,358 - -3.5
4,331,358 - -1.6
4,331,408 - -0.0
4,331,520 + Pf1N1B4_3900 0.12 -0.0
4,331,520 + Pf1N1B4_3900 0.12 -0.0
4,331,521 - Pf1N1B4_3900 0.12 -2.4
4,331,521 - -0.0
4,331,642 - Pf1N1B4_3900 0.39 -0.0
4,331,657 - Pf1N1B4_3900 0.43 -0.0
4,331,792 + Pf1N1B4_3900 0.74 -0.0
4,331,792 + Pf1N1B4_3900 0.74 -3.3
4,331,793 - Pf1N1B4_3900 0.74 -3.2
4,331,793 - Pf1N1B4_3900 0.74 -0.0
4,331,793 - Pf1N1B4_3900 0.74 -2.4
4,331,877 + -1.2
4,331,900 - -1.9
4,331,939 - -0.0
4,331,939 - -0.0
4,331,939 - -0.0
4,331,942 + -0.0
4,331,942 + -1.3
4,331,942 + -0.3
4,331,943 - -0.0
4,331,943 - -0.0
4,331,943 - -0.0
4,331,943 - -0.0
4,331,943 - -3.4
4,331,943 - -0.0
4,331,943 - -0.0
4,332,004 + -0.0
4,332,005 - -0.0
4,332,010 + -0.0
4,332,010 + -1.9
4,332,011 - -0.0
4,332,011 - -1.1
4,332,011 - -0.0
4,332,011 - -0.0
4,332,011 - -1.0
4,332,011 - -0.0
4,332,082 + Pf1N1B4_3901 0.16 -0.0
4,332,082 + Pf1N1B4_3901 0.16 -0.0
4,332,082 + Pf1N1B4_3901 0.16 -0.0

Or see this region's nucleotide sequence