Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2872

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2870 and Pf1N1B4_2871 are separated by 231 nucleotidesPf1N1B4_2871 and Pf1N1B4_2872 are separated by 91 nucleotidesPf1N1B4_2872 and Pf1N1B4_2873 overlap by 4 nucleotidesPf1N1B4_2873 and Pf1N1B4_2874 are separated by 24 nucleotides Pf1N1B4_2870 - Regulator of competence-specific genes, at 3,217,605 to 3,217,877 _2870 Pf1N1B4_2871 - FIG00954216: hypothetical protein, at 3,218,109 to 3,218,453 _2871 Pf1N1B4_2872 - FIG00955330: hypothetical protein, at 3,218,545 to 3,220,101 _2872 Pf1N1B4_2873 - hypothetical protein, at 3,220,098 to 3,220,244 _2873 Pf1N1B4_2874 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 3,220,269 to 3,222,536 _2874 Position (kb) 3218 3219 3220 3221Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3217.561 kb on + strandat 3217.561 kb on + strandat 3217.561 kb on + strandat 3217.562 kb on - strandat 3217.562 kb on - strandat 3217.562 kb on - strandat 3217.562 kb on - strandat 3217.562 kb on - strandat 3217.562 kb on - strandat 3217.562 kb on - strandat 3217.588 kb on + strandat 3217.594 kb on + strandat 3217.594 kb on + strandat 3217.594 kb on + strandat 3217.595 kb on - strandat 3217.595 kb on - strandat 3217.595 kb on - strandat 3217.628 kb on + strandat 3217.629 kb on - strandat 3217.629 kb on - strandat 3217.629 kb on - strandat 3217.629 kb on - strandat 3217.630 kb on - strandat 3217.715 kb on - strand, within Pf1N1B4_2870at 3217.715 kb on - strand, within Pf1N1B4_2870at 3217.715 kb on - strand, within Pf1N1B4_2870at 3217.929 kb on + strandat 3217.940 kb on - strandat 3217.984 kb on - strandat 3217.997 kb on + strandat 3217.998 kb on - strandat 3217.998 kb on - strandat 3218.052 kb on + strandat 3218.097 kb on - strandat 3218.188 kb on + strand, within Pf1N1B4_2871at 3218.188 kb on + strand, within Pf1N1B4_2871at 3218.189 kb on - strand, within Pf1N1B4_2871at 3218.189 kb on - strand, within Pf1N1B4_2871at 3218.278 kb on + strand, within Pf1N1B4_2871at 3218.278 kb on + strand, within Pf1N1B4_2871at 3218.279 kb on - strand, within Pf1N1B4_2871at 3218.279 kb on - strand, within Pf1N1B4_2871at 3218.279 kb on - strand, within Pf1N1B4_2871at 3218.279 kb on - strand, within Pf1N1B4_2871at 3218.279 kb on - strand, within Pf1N1B4_2871at 3218.358 kb on - strand, within Pf1N1B4_2871at 3218.358 kb on - strand, within Pf1N1B4_2871at 3218.384 kb on + strand, within Pf1N1B4_2871at 3218.419 kb on + strandat 3218.420 kb on - strandat 3218.538 kb on + strandat 3218.538 kb on + strandat 3218.546 kb on + strandat 3218.546 kb on + strandat 3218.709 kb on + strand, within Pf1N1B4_2872at 3218.709 kb on + strand, within Pf1N1B4_2872at 3218.709 kb on + strand, within Pf1N1B4_2872at 3218.709 kb on + strand, within Pf1N1B4_2872at 3218.710 kb on - strand, within Pf1N1B4_2872at 3218.710 kb on - strand, within Pf1N1B4_2872at 3218.710 kb on - strand, within Pf1N1B4_2872at 3218.710 kb on - strand, within Pf1N1B4_2872at 3218.710 kb on - strand, within Pf1N1B4_2872at 3218.710 kb on - strand, within Pf1N1B4_2872at 3218.710 kb on - strand, within Pf1N1B4_2872at 3218.710 kb on - strand, within Pf1N1B4_2872at 3218.840 kb on + strand, within Pf1N1B4_2872at 3218.841 kb on - strand, within Pf1N1B4_2872at 3218.841 kb on - strand, within Pf1N1B4_2872at 3218.841 kb on - strand, within Pf1N1B4_2872at 3218.841 kb on - strand, within Pf1N1B4_2872at 3218.841 kb on - strand, within Pf1N1B4_2872at 3218.841 kb on - strand, within Pf1N1B4_2872at 3218.909 kb on + strand, within Pf1N1B4_2872at 3218.909 kb on + strand, within Pf1N1B4_2872at 3218.909 kb on + strand, within Pf1N1B4_2872at 3218.910 kb on - strand, within Pf1N1B4_2872at 3218.910 kb on - strand, within Pf1N1B4_2872at 3218.910 kb on - strand, within Pf1N1B4_2872at 3218.910 kb on - strandat 3218.935 kb on - strand, within Pf1N1B4_2872at 3218.936 kb on + strand, within Pf1N1B4_2872at 3218.936 kb on + strand, within Pf1N1B4_2872at 3218.936 kb on + strand, within Pf1N1B4_2872at 3218.936 kb on + strand, within Pf1N1B4_2872at 3218.936 kb on + strand, within Pf1N1B4_2872at 3218.936 kb on + strandat 3218.936 kb on + strand, within Pf1N1B4_2872at 3218.936 kb on + strand, within Pf1N1B4_2872at 3218.936 kb on + strand, within Pf1N1B4_2872at 3218.937 kb on - strand, within Pf1N1B4_2872at 3218.937 kb on - strandat 3218.937 kb on - strand, within Pf1N1B4_2872at 3218.941 kb on - strand, within Pf1N1B4_2872at 3218.941 kb on - strand, within Pf1N1B4_2872at 3218.982 kb on + strand, within Pf1N1B4_2872at 3218.982 kb on + strand, within Pf1N1B4_2872at 3218.982 kb on + strand, within Pf1N1B4_2872at 3218.982 kb on + strand, within Pf1N1B4_2872at 3218.982 kb on + strand, within Pf1N1B4_2872at 3218.982 kb on + strand, within Pf1N1B4_2872at 3218.982 kb on + strand, within Pf1N1B4_2872at 3218.982 kb on + strand, within Pf1N1B4_2872at 3218.982 kb on + strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3218.983 kb on - strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.113 kb on + strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.114 kb on - strand, within Pf1N1B4_2872at 3219.134 kb on + strand, within Pf1N1B4_2872at 3219.160 kb on - strand, within Pf1N1B4_2872at 3219.239 kb on + strand, within Pf1N1B4_2872at 3219.266 kb on + strand, within Pf1N1B4_2872at 3219.492 kb on + strand, within Pf1N1B4_2872at 3219.870 kb on - strand, within Pf1N1B4_2872at 3219.870 kb on - strand, within Pf1N1B4_2872at 3219.981 kb on + strandat 3220.206 kb on + strand, within Pf1N1B4_2873at 3220.206 kb on + strand, within Pf1N1B4_2873at 3220.206 kb on + strand, within Pf1N1B4_2873at 3220.206 kb on + strand, within Pf1N1B4_2873at 3220.206 kb on + strand, within Pf1N1B4_2873at 3220.208 kb on + strand, within Pf1N1B4_2873at 3220.209 kb on - strand, within Pf1N1B4_2873at 3220.795 kb on - strand, within Pf1N1B4_2874at 3220.840 kb on - strand, within Pf1N1B4_2874at 3221.010 kb on + strand, within Pf1N1B4_2874

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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3,217,561 + -2.9
3,217,561 + +0.1
3,217,561 + +0.1
3,217,562 - +0.1
3,217,562 - +0.1
3,217,562 - +0.1
3,217,562 - +0.1
3,217,562 - +0.1
3,217,562 - +0.1
3,217,562 - -2.5
3,217,588 + -1.2
3,217,594 + +0.1
3,217,594 + +0.1
3,217,594 + +0.1
3,217,595 - -2.1
3,217,595 - +0.1
3,217,595 - +0.1
3,217,628 + +0.1
3,217,629 - -2.1
3,217,629 - +0.1
3,217,629 - +0.7
3,217,629 - -1.8
3,217,630 - -3.8
3,217,715 - Pf1N1B4_2870 0.40 +0.1
3,217,715 - Pf1N1B4_2870 0.40 +0.1
3,217,715 - Pf1N1B4_2870 0.40 +0.1
3,217,929 + +0.1
3,217,940 - -0.7
3,217,984 - +0.1
3,217,997 + +0.1
3,217,998 - -2.2
3,217,998 - +0.1
3,218,052 + -0.4
3,218,097 - -2.0
3,218,188 + Pf1N1B4_2871 0.23 +0.1
3,218,188 + Pf1N1B4_2871 0.23 +0.1
3,218,189 - Pf1N1B4_2871 0.23 +0.1
3,218,189 - Pf1N1B4_2871 0.23 +0.1
3,218,278 + Pf1N1B4_2871 0.49 -1.6
3,218,278 + Pf1N1B4_2871 0.49 +0.1
3,218,279 - Pf1N1B4_2871 0.49 +0.1
3,218,279 - Pf1N1B4_2871 0.49 +0.1
3,218,279 - Pf1N1B4_2871 0.49 +0.1
3,218,279 - Pf1N1B4_2871 0.49 +0.1
3,218,279 - Pf1N1B4_2871 0.49 +0.1
3,218,358 - Pf1N1B4_2871 0.72 +0.1
3,218,358 - Pf1N1B4_2871 0.72 +0.1
3,218,384 + Pf1N1B4_2871 0.80 +0.1
3,218,419 + +0.1
3,218,420 - +0.1
3,218,538 + -1.9
3,218,538 + +0.1
3,218,546 + +0.1
3,218,546 + +0.1
3,218,709 + Pf1N1B4_2872 0.11 +0.1
3,218,709 + Pf1N1B4_2872 0.11 -4.5
3,218,709 + Pf1N1B4_2872 0.11 -3.9
3,218,709 + Pf1N1B4_2872 0.11 +0.1
3,218,710 - Pf1N1B4_2872 0.11 -2.4
3,218,710 - Pf1N1B4_2872 0.11 +0.1
3,218,710 - Pf1N1B4_2872 0.11 +0.1
3,218,710 - Pf1N1B4_2872 0.11 -3.8
3,218,710 - Pf1N1B4_2872 0.11 -5.0
3,218,710 - Pf1N1B4_2872 0.11 +0.1
3,218,710 - Pf1N1B4_2872 0.11 -3.3
3,218,710 - Pf1N1B4_2872 0.11 -2.9
3,218,840 + Pf1N1B4_2872 0.19 +0.1
3,218,841 - Pf1N1B4_2872 0.19 +0.1
3,218,841 - Pf1N1B4_2872 0.19 +0.1
3,218,841 - Pf1N1B4_2872 0.19 -1.9
3,218,841 - Pf1N1B4_2872 0.19 +0.1
3,218,841 - Pf1N1B4_2872 0.19 +0.1
3,218,841 - Pf1N1B4_2872 0.19 -2.9
3,218,909 + Pf1N1B4_2872 0.23 +0.1
3,218,909 + Pf1N1B4_2872 0.23 +0.1
3,218,909 + Pf1N1B4_2872 0.23 +0.1
3,218,910 - Pf1N1B4_2872 0.23 -4.0
3,218,910 - Pf1N1B4_2872 0.23 +0.1
3,218,910 - Pf1N1B4_2872 0.23 -5.6
3,218,910 - +0.1
3,218,935 - Pf1N1B4_2872 0.25 -3.5
3,218,936 + Pf1N1B4_2872 0.25 -2.3
3,218,936 + Pf1N1B4_2872 0.25 -1.2
3,218,936 + Pf1N1B4_2872 0.25 -4.3
3,218,936 + Pf1N1B4_2872 0.25 +0.1
3,218,936 + Pf1N1B4_2872 0.25 +0.1
3,218,936 + -1.8
3,218,936 + Pf1N1B4_2872 0.25 -1.9
3,218,936 + Pf1N1B4_2872 0.25 +0.1
3,218,936 + Pf1N1B4_2872 0.25 +0.1
3,218,937 - Pf1N1B4_2872 0.25 +0.1
3,218,937 - +0.1
3,218,937 - Pf1N1B4_2872 0.25 -4.5
3,218,941 - Pf1N1B4_2872 0.25 +0.1
3,218,941 - Pf1N1B4_2872 0.25 +0.1
3,218,982 + Pf1N1B4_2872 0.28 +0.1
3,218,982 + Pf1N1B4_2872 0.28 +0.1
3,218,982 + Pf1N1B4_2872 0.28 +0.1
3,218,982 + Pf1N1B4_2872 0.28 +0.1
3,218,982 + Pf1N1B4_2872 0.28 -3.9
3,218,982 + Pf1N1B4_2872 0.28 +0.1
3,218,982 + Pf1N1B4_2872 0.28 +0.1
3,218,982 + Pf1N1B4_2872 0.28 -4.8
3,218,982 + Pf1N1B4_2872 0.28 -2.2
3,218,983 - Pf1N1B4_2872 0.28 +0.1
3,218,983 - Pf1N1B4_2872 0.28 +0.1
3,218,983 - Pf1N1B4_2872 0.28 +0.1
3,218,983 - Pf1N1B4_2872 0.28 -5.4
3,218,983 - Pf1N1B4_2872 0.28 -2.7
3,218,983 - Pf1N1B4_2872 0.28 -5.4
3,218,983 - Pf1N1B4_2872 0.28 +0.1
3,218,983 - Pf1N1B4_2872 0.28 -2.6
3,218,983 - Pf1N1B4_2872 0.28 +0.1
3,218,983 - Pf1N1B4_2872 0.28 -3.2
3,218,983 - Pf1N1B4_2872 0.28 -3.6
3,218,983 - Pf1N1B4_2872 0.28 +0.1
3,218,983 - Pf1N1B4_2872 0.28 +0.1
3,218,983 - Pf1N1B4_2872 0.28 +0.1
3,218,983 - Pf1N1B4_2872 0.28 +0.1
3,219,113 + Pf1N1B4_2872 0.36 +0.1
3,219,113 + Pf1N1B4_2872 0.36 -3.0
3,219,113 + Pf1N1B4_2872 0.36 +0.1
3,219,113 + Pf1N1B4_2872 0.36 -1.5
3,219,113 + Pf1N1B4_2872 0.36 -3.9
3,219,113 + Pf1N1B4_2872 0.36 -5.0
3,219,114 - Pf1N1B4_2872 0.37 -4.5
3,219,114 - Pf1N1B4_2872 0.37 +0.1
3,219,114 - Pf1N1B4_2872 0.37 +0.1
3,219,114 - Pf1N1B4_2872 0.37 +0.1
3,219,114 - Pf1N1B4_2872 0.37 +0.1
3,219,114 - Pf1N1B4_2872 0.37 -4.9
3,219,114 - Pf1N1B4_2872 0.37 -3.1
3,219,114 - Pf1N1B4_2872 0.37 +0.1
3,219,114 - Pf1N1B4_2872 0.37 +0.1
3,219,114 - Pf1N1B4_2872 0.37 +0.1
3,219,134 + Pf1N1B4_2872 0.38 -3.3
3,219,160 - Pf1N1B4_2872 0.39 +0.1
3,219,239 + Pf1N1B4_2872 0.45 +0.1
3,219,266 + Pf1N1B4_2872 0.46 -0.3
3,219,492 + Pf1N1B4_2872 0.61 -1.5
3,219,870 - Pf1N1B4_2872 0.85 +0.1
3,219,870 - Pf1N1B4_2872 0.85 +0.1
3,219,981 + -3.4
3,220,206 + Pf1N1B4_2873 0.73 -2.7
3,220,206 + Pf1N1B4_2873 0.73 -2.8
3,220,206 + Pf1N1B4_2873 0.73 -1.5
3,220,206 + Pf1N1B4_2873 0.73 -4.9
3,220,206 + Pf1N1B4_2873 0.73 +0.1
3,220,208 + Pf1N1B4_2873 0.75 +0.1
3,220,209 - Pf1N1B4_2873 0.76 -1.5
3,220,795 - Pf1N1B4_2874 0.23 -2.8
3,220,840 - Pf1N1B4_2874 0.25 +0.1
3,221,010 + Pf1N1B4_2874 0.33 +0.1

Or see this region's nucleotide sequence