Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_284

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_283 and Pf1N1B4_284 are separated by 113 nucleotidesPf1N1B4_284 and Pf1N1B4_285 are separated by 96 nucleotides Pf1N1B4_283 - Cys regulon transcriptional activator CysB, at 339,949 to 340,923 _283 Pf1N1B4_284 - Universal stress protein family, at 341,037 to 341,540 _284 Pf1N1B4_285 - 5'-nucleotidase (EC 3.1.3.5), at 341,637 to 342,542 _285 Position (kb) 341 342Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 340.944 kb on - strandat 340.944 kb on - strandat 340.944 kb on - strandat 340.969 kb on - strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.977 kb on - strandat 340.977 kb on - strandat 340.977 kb on - strandat 340.979 kb on - strandat 341.003 kb on - strandat 341.039 kb on - strandat 341.039 kb on - strandat 341.081 kb on - strandat 341.081 kb on - strandat 341.081 kb on - strandat 341.081 kb on - strandat 341.167 kb on - strand, within Pf1N1B4_284at 341.337 kb on - strand, within Pf1N1B4_284at 341.337 kb on - strand, within Pf1N1B4_284at 341.383 kb on + strand, within Pf1N1B4_284at 341.384 kb on - strand, within Pf1N1B4_284at 341.384 kb on - strand, within Pf1N1B4_284at 341.384 kb on - strand, within Pf1N1B4_284at 341.384 kb on - strand, within Pf1N1B4_284at 341.384 kb on - strand, within Pf1N1B4_284at 341.384 kb on - strand, within Pf1N1B4_284at 341.384 kb on - strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strandat 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strandat 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.440 kb on + strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strandat 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strandat 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.441 kb on - strand, within Pf1N1B4_284at 341.500 kb on + strandat 341.501 kb on - strandat 341.501 kb on - strandat 341.501 kb on - strandat 341.501 kb on - strandat 341.501 kb on - strandat 341.501 kb on - strandat 341.501 kb on - strandat 341.501 kb on - strandat 341.501 kb on - strandat 341.521 kb on + strandat 341.521 kb on + strandat 341.521 kb on + strandat 341.521 kb on + strandat 341.521 kb on + strandat 341.521 kb on + strandat 341.521 kb on + strandat 341.521 kb on + strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.522 kb on - strandat 341.583 kb on + strandat 341.584 kb on - strandat 341.584 kb on - strandat 341.639 kb on - strandat 341.654 kb on + strandat 341.733 kb on + strand, within Pf1N1B4_285at 341.733 kb on + strand, within Pf1N1B4_285at 341.733 kb on + strand, within Pf1N1B4_285at 341.734 kb on - strand, within Pf1N1B4_285at 342.019 kb on + strand, within Pf1N1B4_285at 342.020 kb on - strand, within Pf1N1B4_285at 342.020 kb on - strand, within Pf1N1B4_285at 342.020 kb on - strand, within Pf1N1B4_285at 342.117 kb on - strand, within Pf1N1B4_285at 342.117 kb on - strand, within Pf1N1B4_285at 342.117 kb on - strand, within Pf1N1B4_285at 342.117 kb on - strand, within Pf1N1B4_285at 342.117 kb on - strand, within Pf1N1B4_285at 342.206 kb on - strand, within Pf1N1B4_285at 342.206 kb on - strand, within Pf1N1B4_285at 342.206 kb on - strand, within Pf1N1B4_285at 342.260 kb on - strand, within Pf1N1B4_285at 342.260 kb on - strand, within Pf1N1B4_285at 342.269 kb on + strandat 342.269 kb on + strand, within Pf1N1B4_285at 342.269 kb on + strand, within Pf1N1B4_285at 342.270 kb on - strand, within Pf1N1B4_285at 342.270 kb on - strand, within Pf1N1B4_285at 342.270 kb on - strand, within Pf1N1B4_285at 342.270 kb on - strand, within Pf1N1B4_285at 342.270 kb on - strand, within Pf1N1B4_285at 342.270 kb on - strand, within Pf1N1B4_285at 342.270 kb on - strand, within Pf1N1B4_285at 342.321 kb on + strand, within Pf1N1B4_285at 342.322 kb on - strand, within Pf1N1B4_285at 342.322 kb on - strand, within Pf1N1B4_285at 342.322 kb on - strand, within Pf1N1B4_285at 342.428 kb on - strand, within Pf1N1B4_285at 342.428 kb on - strand, within Pf1N1B4_285at 342.461 kb on - strandat 342.461 kb on - strandat 342.461 kb on - strandat 342.461 kb on - strandat 342.528 kb on + strandat 342.529 kb on - strandat 342.529 kb on - strandat 342.529 kb on - strandat 342.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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340,944 - -1.9
340,944 - -0.6
340,944 - -0.0
340,969 - -0.0
340,971 - -2.3
340,971 - -3.5
340,971 - -1.2
340,971 - -0.4
340,971 - -0.9
340,971 - -0.7
340,971 - -1.5
340,977 - -0.0
340,977 - -0.7
340,977 - -1.1
340,979 - -0.0
341,003 - +0.3
341,039 - -0.5
341,039 - -1.0
341,081 - -0.0
341,081 - -0.0
341,081 - -0.0
341,081 - -0.0
341,167 - Pf1N1B4_284 0.26 -3.8
341,337 - Pf1N1B4_284 0.60 -2.5
341,337 - Pf1N1B4_284 0.60 -2.6
341,383 + Pf1N1B4_284 0.69 -0.0
341,384 - Pf1N1B4_284 0.69 -5.9
341,384 - Pf1N1B4_284 0.69 -2.9
341,384 - Pf1N1B4_284 0.69 -2.6
341,384 - Pf1N1B4_284 0.69 -4.9
341,384 - Pf1N1B4_284 0.69 -0.0
341,384 - Pf1N1B4_284 0.69 -5.4
341,384 - Pf1N1B4_284 0.69 -5.3
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -5.5
341,440 + -0.0
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + Pf1N1B4_284 0.80 -3.9
341,440 + Pf1N1B4_284 0.80 -0.0
341,440 + -0.0
341,440 + Pf1N1B4_284 0.80 -4.4
341,440 + Pf1N1B4_284 0.80 -3.7
341,440 + Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -2.9
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -4.8
341,441 - Pf1N1B4_284 0.80 -4.9
341,441 - Pf1N1B4_284 0.80 -3.8
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -6.2
341,441 - Pf1N1B4_284 0.80 -3.0
341,441 - Pf1N1B4_284 0.80 -3.8
341,441 - Pf1N1B4_284 0.80 -3.4
341,441 - Pf1N1B4_284 0.80 -2.5
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -1.9
341,441 - Pf1N1B4_284 0.80 -2.2
341,441 - Pf1N1B4_284 0.80 -6.5
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -4.0
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -4.0
341,441 - Pf1N1B4_284 0.80 -3.9
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - -0.0
341,441 - Pf1N1B4_284 0.80 -4.8
341,441 - Pf1N1B4_284 0.80 -3.9
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -2.8
341,441 - Pf1N1B4_284 0.80 -3.8
341,441 - Pf1N1B4_284 0.80 -1.2
341,441 - Pf1N1B4_284 0.80 -5.0
341,441 - -0.0
341,441 - Pf1N1B4_284 0.80 -4.3
341,441 - Pf1N1B4_284 0.80 -3.4
341,441 - Pf1N1B4_284 0.80 -4.4
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -0.0
341,441 - Pf1N1B4_284 0.80 -3.8
341,441 - Pf1N1B4_284 0.80 -3.9
341,441 - Pf1N1B4_284 0.80 -4.8
341,441 - Pf1N1B4_284 0.80 -3.5
341,441 - Pf1N1B4_284 0.80 -3.6
341,441 - Pf1N1B4_284 0.80 -4.0
341,441 - Pf1N1B4_284 0.80 -3.3
341,441 - Pf1N1B4_284 0.80 -3.7
341,500 + -0.0
341,501 - -3.9
341,501 - -4.6
341,501 - -2.3
341,501 - -0.0
341,501 - -0.0
341,501 - -0.0
341,501 - -2.3
341,501 - -0.0
341,501 - -2.8
341,521 + -0.0
341,521 + -0.0
341,521 + -2.0
341,521 + -6.6
341,521 + -0.0
341,521 + -0.0
341,521 + -4.9
341,521 + -0.0
341,522 - -1.5
341,522 - -4.6
341,522 - -6.7
341,522 - -3.3
341,522 - -4.1
341,522 - -4.3
341,522 - -0.0
341,522 - -3.4
341,522 - -2.4
341,522 - -4.1
341,522 - -4.4
341,522 - -5.1
341,522 - -3.9
341,522 - -3.3
341,522 - -0.0
341,522 - -0.0
341,522 - -6.7
341,522 - -0.0
341,522 - -4.1
341,522 - -3.7
341,522 - -0.0
341,522 - -5.1
341,583 + -4.7
341,584 - +0.1
341,584 - -0.0
341,639 - -0.0
341,654 + -2.0
341,733 + Pf1N1B4_285 0.11 -0.0
341,733 + Pf1N1B4_285 0.11 -0.0
341,733 + Pf1N1B4_285 0.11 -2.5
341,734 - Pf1N1B4_285 0.11 +0.6
342,019 + Pf1N1B4_285 0.42 -3.1
342,020 - Pf1N1B4_285 0.42 -0.3
342,020 - Pf1N1B4_285 0.42 -2.9
342,020 - Pf1N1B4_285 0.42 -0.0
342,117 - Pf1N1B4_285 0.53 -0.9
342,117 - Pf1N1B4_285 0.53 -1.3
342,117 - Pf1N1B4_285 0.53 -1.3
342,117 - Pf1N1B4_285 0.53 -0.0
342,117 - Pf1N1B4_285 0.53 -0.0
342,206 - Pf1N1B4_285 0.63 -0.0
342,206 - Pf1N1B4_285 0.63 -0.0
342,206 - Pf1N1B4_285 0.63 -1.6
342,260 - Pf1N1B4_285 0.69 -0.0
342,260 - Pf1N1B4_285 0.69 -3.7
342,269 + -2.5
342,269 + Pf1N1B4_285 0.70 -0.0
342,269 + Pf1N1B4_285 0.70 -3.6
342,270 - Pf1N1B4_285 0.70 -2.1
342,270 - Pf1N1B4_285 0.70 -0.0
342,270 - Pf1N1B4_285 0.70 -0.0
342,270 - Pf1N1B4_285 0.70 -0.0
342,270 - Pf1N1B4_285 0.70 -0.0
342,270 - Pf1N1B4_285 0.70 -1.5
342,270 - Pf1N1B4_285 0.70 -0.0
342,321 + Pf1N1B4_285 0.75 -1.1
342,322 - Pf1N1B4_285 0.76 -0.9
342,322 - Pf1N1B4_285 0.76 -1.3
342,322 - Pf1N1B4_285 0.76 -3.2
342,428 - Pf1N1B4_285 0.87 -2.5
342,428 - Pf1N1B4_285 0.87 -0.0
342,461 - -0.0
342,461 - -1.5
342,461 - -2.8
342,461 - -2.2
342,528 + -0.6
342,529 - -0.0
342,529 - -0.0
342,529 - -0.5
342,529 - -0.0

Or see this region's nucleotide sequence