Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_199

Experiment: Nitrate reduction

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_196 and Pf1N1B4_197 overlap by 4 nucleotidesPf1N1B4_197 and Pf1N1B4_198 overlap by 4 nucleotidesPf1N1B4_198 and Pf1N1B4_199 overlap by 4 nucleotidesPf1N1B4_199 and Pf1N1B4_200 are separated by 35 nucleotidesPf1N1B4_200 and Pf1N1B4_201 overlap by 4 nucleotides Pf1N1B4_196 - FIG137594: Putative iron-regulated membrane protein, at 244,571 to 245,776 _196 Pf1N1B4_197 - FIG139991: Putative thiamine pyrophosphate-requiring enzyme, at 245,773 to 246,315 _197 Pf1N1B4_198 - FIG137877: Hypothetical protein in pyoverdin gene cluster, at 246,312 to 246,632 _198 Pf1N1B4_199 - FIG049111: Hypothetical protein in pyoverdin gene cluster, at 246,629 to 247,204 _199 Pf1N1B4_200 - FIG014801: Cation ABC transporter, periplasmic cation-binding protein, at 247,240 to 248,169 _200 Pf1N1B4_201 - ABC transporter in pyoverdin gene cluster, ATP-binding component, at 248,166 to 249,017 _201 Position (kb) 246 247 248Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 245.887 kb on + strand, within Pf1N1B4_197at 245.888 kb on - strand, within Pf1N1B4_197at 245.888 kb on - strand, within Pf1N1B4_197at 246.025 kb on + strand, within Pf1N1B4_197at 246.025 kb on + strandat 246.337 kb on + strandat 246.338 kb on - strandat 246.338 kb on - strandat 246.338 kb on - strandat 246.341 kb on - strandat 246.564 kb on + strand, within Pf1N1B4_198at 246.564 kb on + strand, within Pf1N1B4_198at 246.564 kb on + strandat 246.564 kb on + strand, within Pf1N1B4_198at 246.565 kb on - strand, within Pf1N1B4_198at 246.565 kb on - strand, within Pf1N1B4_198at 246.565 kb on - strand, within Pf1N1B4_198at 246.565 kb on - strand, within Pf1N1B4_198at 246.634 kb on + strandat 246.634 kb on + strandat 246.635 kb on - strandat 246.635 kb on - strandat 246.635 kb on - strandat 246.686 kb on + strandat 246.686 kb on + strandat 246.686 kb on + strandat 246.686 kb on + strandat 246.686 kb on + strandat 246.686 kb on + strandat 246.686 kb on + strandat 246.687 kb on - strand, within Pf1N1B4_199at 246.687 kb on - strand, within Pf1N1B4_199at 246.687 kb on - strand, within Pf1N1B4_199at 246.687 kb on - strand, within Pf1N1B4_199at 246.687 kb on - strand, within Pf1N1B4_199at 246.687 kb on - strand, within Pf1N1B4_199at 246.687 kb on - strand, within Pf1N1B4_199at 246.824 kb on - strand, within Pf1N1B4_199at 246.824 kb on - strand, within Pf1N1B4_199at 246.824 kb on - strand, within Pf1N1B4_199at 246.824 kb on - strandat 246.824 kb on - strand, within Pf1N1B4_199at 246.824 kb on - strand, within Pf1N1B4_199at 246.828 kb on - strand, within Pf1N1B4_199at 246.828 kb on - strand, within Pf1N1B4_199at 246.996 kb on - strand, within Pf1N1B4_199at 246.996 kb on - strand, within Pf1N1B4_199at 247.245 kb on + strandat 247.246 kb on - strandat 247.246 kb on - strandat 247.246 kb on - strandat 247.246 kb on - strandat 247.369 kb on + strandat 247.369 kb on + strand, within Pf1N1B4_200at 247.370 kb on - strand, within Pf1N1B4_200at 247.372 kb on + strand, within Pf1N1B4_200at 247.372 kb on + strand, within Pf1N1B4_200at 247.372 kb on + strand, within Pf1N1B4_200at 247.372 kb on + strand, within Pf1N1B4_200at 247.373 kb on - strand, within Pf1N1B4_200at 247.373 kb on - strand, within Pf1N1B4_200at 247.373 kb on - strand, within Pf1N1B4_200at 247.373 kb on - strand, within Pf1N1B4_200at 247.373 kb on - strand, within Pf1N1B4_200at 247.378 kb on + strand, within Pf1N1B4_200at 247.378 kb on + strand, within Pf1N1B4_200at 247.378 kb on + strand, within Pf1N1B4_200at 247.378 kb on + strand, within Pf1N1B4_200at 247.379 kb on - strand, within Pf1N1B4_200at 247.379 kb on - strand, within Pf1N1B4_200at 247.379 kb on - strand, within Pf1N1B4_200at 247.379 kb on - strand, within Pf1N1B4_200at 247.451 kb on - strand, within Pf1N1B4_200at 247.451 kb on - strand, within Pf1N1B4_200at 247.502 kb on + strand, within Pf1N1B4_200at 247.502 kb on + strand, within Pf1N1B4_200at 247.506 kb on + strand, within Pf1N1B4_200at 247.744 kb on + strand, within Pf1N1B4_200at 247.867 kb on + strand, within Pf1N1B4_200at 247.868 kb on - strand, within Pf1N1B4_200at 248.020 kb on + strand, within Pf1N1B4_200at 248.020 kb on + strand, within Pf1N1B4_200at 248.021 kb on - strand, within Pf1N1B4_200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
remove
245,887 + Pf1N1B4_197 0.21 -0.0
245,888 - Pf1N1B4_197 0.21 -1.0
245,888 - Pf1N1B4_197 0.21 -0.0
246,025 + Pf1N1B4_197 0.46 -0.0
246,025 + -0.0
246,337 + -0.0
246,338 - -1.6
246,338 - -0.8
246,338 - -2.4
246,341 - -0.0
246,564 + Pf1N1B4_198 0.79 -4.8
246,564 + Pf1N1B4_198 0.79 -0.0
246,564 + -0.0
246,564 + Pf1N1B4_198 0.79 -0.0
246,565 - Pf1N1B4_198 0.79 -0.0
246,565 - Pf1N1B4_198 0.79 -0.0
246,565 - Pf1N1B4_198 0.79 -0.0
246,565 - Pf1N1B4_198 0.79 -0.0
246,634 + -0.0
246,634 + -1.7
246,635 - -1.6
246,635 - -0.0
246,635 - -0.0
246,686 + -1.4
246,686 + -0.0
246,686 + -0.0
246,686 + -3.7
246,686 + -0.0
246,686 + -0.0
246,686 + -1.3
246,687 - Pf1N1B4_199 0.10 -0.0
246,687 - Pf1N1B4_199 0.10 -0.0
246,687 - Pf1N1B4_199 0.10 -2.9
246,687 - Pf1N1B4_199 0.10 -0.0
246,687 - Pf1N1B4_199 0.10 -0.0
246,687 - Pf1N1B4_199 0.10 -0.0
246,687 - Pf1N1B4_199 0.10 -0.0
246,824 - Pf1N1B4_199 0.34 -0.0
246,824 - Pf1N1B4_199 0.34 -0.0
246,824 - Pf1N1B4_199 0.34 -0.0
246,824 - -2.4
246,824 - Pf1N1B4_199 0.34 -0.0
246,824 - Pf1N1B4_199 0.34 -3.2
246,828 - Pf1N1B4_199 0.35 -0.0
246,828 - Pf1N1B4_199 0.35 -0.0
246,996 - Pf1N1B4_199 0.64 -3.4
246,996 - Pf1N1B4_199 0.64 -0.0
247,245 + -0.0
247,246 - -0.0
247,246 - -0.0
247,246 - -1.5
247,246 - -0.0
247,369 + -2.4
247,369 + Pf1N1B4_200 0.14 -0.0
247,370 - Pf1N1B4_200 0.14 -0.0
247,372 + Pf1N1B4_200 0.14 -0.0
247,372 + Pf1N1B4_200 0.14 -1.9
247,372 + Pf1N1B4_200 0.14 -0.0
247,372 + Pf1N1B4_200 0.14 -0.0
247,373 - Pf1N1B4_200 0.14 -0.0
247,373 - Pf1N1B4_200 0.14 -1.7
247,373 - Pf1N1B4_200 0.14 -0.0
247,373 - Pf1N1B4_200 0.14 -0.0
247,373 - Pf1N1B4_200 0.14 -0.0
247,378 + Pf1N1B4_200 0.15 -1.6
247,378 + Pf1N1B4_200 0.15 -0.0
247,378 + Pf1N1B4_200 0.15 -0.0
247,378 + Pf1N1B4_200 0.15 -1.2
247,379 - Pf1N1B4_200 0.15 -0.0
247,379 - Pf1N1B4_200 0.15 -0.0
247,379 - Pf1N1B4_200 0.15 -0.0
247,379 - Pf1N1B4_200 0.15 -0.0
247,451 - Pf1N1B4_200 0.23 -1.4
247,451 - Pf1N1B4_200 0.23 -0.0
247,502 + Pf1N1B4_200 0.28 -1.8
247,502 + Pf1N1B4_200 0.28 -0.0
247,506 + Pf1N1B4_200 0.29 -3.7
247,744 + Pf1N1B4_200 0.54 -2.1
247,867 + Pf1N1B4_200 0.67 -3.8
247,868 - Pf1N1B4_200 0.68 -0.0
248,020 + Pf1N1B4_200 0.84 -0.0
248,020 + Pf1N1B4_200 0.84 -0.0
248,021 - Pf1N1B4_200 0.84 -0.0

Or see this region's nucleotide sequence