Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1725

Experiment: Nitrate reduction

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1724 and Pf1N1B4_1725 are separated by 3 nucleotidesPf1N1B4_1725 and Pf1N1B4_1726 are separated by 85 nucleotides Pf1N1B4_1724 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 1,970,644 to 1,971,633 _1724 Pf1N1B4_1725 - Sulfate transport system permease protein CysW, at 1,971,637 to 1,972,434 _1725 Pf1N1B4_1726 - Sulfate transport system permease protein CysT, at 1,972,520 to 1,973,338 _1726 Position (kb) 1971 1972 1973Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1970.645 kb on + strandat 1970.645 kb on + strandat 1970.645 kb on + strandat 1970.646 kb on - strandat 1970.686 kb on + strandat 1970.687 kb on - strandat 1970.809 kb on - strand, within Pf1N1B4_1724at 1970.809 kb on - strand, within Pf1N1B4_1724at 1970.933 kb on + strand, within Pf1N1B4_1724at 1971.015 kb on + strand, within Pf1N1B4_1724at 1971.016 kb on - strand, within Pf1N1B4_1724at 1971.386 kb on + strand, within Pf1N1B4_1724at 1971.386 kb on + strand, within Pf1N1B4_1724at 1971.387 kb on - strand, within Pf1N1B4_1724at 1971.387 kb on - strand, within Pf1N1B4_1724at 1971.387 kb on - strand, within Pf1N1B4_1724at 1971.387 kb on - strand, within Pf1N1B4_1724at 1971.638 kb on + strandat 1971.638 kb on + strandat 1971.638 kb on + strandat 1971.638 kb on + strandat 1971.638 kb on + strandat 1971.638 kb on + strandat 1971.639 kb on - strandat 1971.639 kb on - strandat 1971.639 kb on - strandat 1971.639 kb on - strandat 1971.639 kb on - strandat 1971.673 kb on - strandat 1971.761 kb on + strand, within Pf1N1B4_1725at 1971.761 kb on + strand, within Pf1N1B4_1725at 1971.761 kb on + strand, within Pf1N1B4_1725at 1971.762 kb on - strand, within Pf1N1B4_1725at 1971.762 kb on - strand, within Pf1N1B4_1725at 1971.762 kb on - strand, within Pf1N1B4_1725at 1971.770 kb on + strand, within Pf1N1B4_1725at 1971.770 kb on + strand, within Pf1N1B4_1725at 1971.770 kb on + strand, within Pf1N1B4_1725at 1971.770 kb on + strand, within Pf1N1B4_1725at 1971.771 kb on - strand, within Pf1N1B4_1725at 1971.771 kb on - strand, within Pf1N1B4_1725at 1971.771 kb on - strand, within Pf1N1B4_1725at 1971.771 kb on - strand, within Pf1N1B4_1725at 1971.771 kb on - strand, within Pf1N1B4_1725at 1971.884 kb on + strand, within Pf1N1B4_1725at 1971.884 kb on + strand, within Pf1N1B4_1725at 1971.884 kb on + strand, within Pf1N1B4_1725at 1971.884 kb on + strand, within Pf1N1B4_1725at 1971.884 kb on + strand, within Pf1N1B4_1725at 1971.885 kb on - strand, within Pf1N1B4_1725at 1971.885 kb on - strand, within Pf1N1B4_1725at 1971.885 kb on - strand, within Pf1N1B4_1725at 1972.132 kb on + strand, within Pf1N1B4_1725at 1972.132 kb on + strand, within Pf1N1B4_1725at 1972.132 kb on + strand, within Pf1N1B4_1725at 1972.132 kb on + strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strandat 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.133 kb on - strand, within Pf1N1B4_1725at 1972.136 kb on + strand, within Pf1N1B4_1725at 1972.136 kb on + strand, within Pf1N1B4_1725at 1972.136 kb on + strand, within Pf1N1B4_1725at 1972.136 kb on + strand, within Pf1N1B4_1725at 1972.136 kb on + strand, within Pf1N1B4_1725at 1972.136 kb on + strand, within Pf1N1B4_1725at 1972.136 kb on + strand, within Pf1N1B4_1725at 1972.136 kb on + strand, within Pf1N1B4_1725at 1972.136 kb on + strand, within Pf1N1B4_1725at 1972.137 kb on - strand, within Pf1N1B4_1725at 1972.137 kb on - strand, within Pf1N1B4_1725at 1972.137 kb on - strand, within Pf1N1B4_1725at 1972.137 kb on - strand, within Pf1N1B4_1725at 1972.137 kb on - strand, within Pf1N1B4_1725at 1972.137 kb on - strand, within Pf1N1B4_1725at 1972.137 kb on - strand, within Pf1N1B4_1725at 1972.137 kb on - strand, within Pf1N1B4_1725at 1972.137 kb on - strand, within Pf1N1B4_1725at 1972.137 kb on - strand, within Pf1N1B4_1725at 1972.217 kb on + strand, within Pf1N1B4_1725at 1972.218 kb on - strand, within Pf1N1B4_1725at 1972.218 kb on - strand, within Pf1N1B4_1725at 1972.491 kb on + strandat 1972.491 kb on + strandat 1972.492 kb on - strandat 1972.592 kb on + strandat 1972.592 kb on + strandat 1972.592 kb on + strandat 1972.593 kb on - strandat 1972.593 kb on - strandat 1972.617 kb on + strand, within Pf1N1B4_1726at 1972.618 kb on - strand, within Pf1N1B4_1726at 1972.623 kb on + strand, within Pf1N1B4_1726at 1972.624 kb on - strand, within Pf1N1B4_1726at 1972.797 kb on - strand, within Pf1N1B4_1726at 1972.856 kb on + strand, within Pf1N1B4_1726at 1972.870 kb on + strand, within Pf1N1B4_1726at 1972.871 kb on - strand, within Pf1N1B4_1726at 1972.871 kb on - strandat 1972.871 kb on - strand, within Pf1N1B4_1726at 1972.874 kb on + strand, within Pf1N1B4_1726at 1972.874 kb on + strand, within Pf1N1B4_1726at 1972.875 kb on - strand, within Pf1N1B4_1726at 1972.878 kb on - strand, within Pf1N1B4_1726at 1972.878 kb on - strand, within Pf1N1B4_1726at 1972.892 kb on + strand, within Pf1N1B4_1726at 1972.892 kb on + strand, within Pf1N1B4_1726at 1972.929 kb on + strand, within Pf1N1B4_1726at 1972.929 kb on + strand, within Pf1N1B4_1726at 1972.986 kb on + strand, within Pf1N1B4_1726at 1972.986 kb on + strand, within Pf1N1B4_1726at 1972.987 kb on - strand, within Pf1N1B4_1726at 1973.079 kb on + strand, within Pf1N1B4_1726at 1973.136 kb on + strand, within Pf1N1B4_1726at 1973.137 kb on - strand, within Pf1N1B4_1726at 1973.137 kb on - strand, within Pf1N1B4_1726at 1973.216 kb on - strand, within Pf1N1B4_1726at 1973.274 kb on + strandat 1973.274 kb on + strandat 1973.274 kb on + strandat 1973.275 kb on - strandat 1973.275 kb on - strandat 1973.275 kb on - strandat 1973.275 kb on - strandat 1973.275 kb on - strandat 1973.275 kb on - strandat 1973.275 kb on - strandat 1973.286 kb on + strandat 1973.326 kb on + strandat 1973.327 kb on - strandat 1973.327 kb on - strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.338 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.410 kb on + strandat 1973.411 kb on - strandat 1973.411 kb on - strandat 1973.411 kb on - strandat 1973.411 kb on - strandat 1973.411 kb on - strandat 1973.411 kb on - strandat 1973.411 kb on - strandat 1973.411 kb on - strandat 1973.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction
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1,970,645 + -0.8
1,970,645 + -3.5
1,970,645 + +0.0
1,970,646 - +0.0
1,970,686 + +0.0
1,970,687 - +0.0
1,970,809 - Pf1N1B4_1724 0.17 +0.0
1,970,809 - Pf1N1B4_1724 0.17 -4.7
1,970,933 + Pf1N1B4_1724 0.29 +0.0
1,971,015 + Pf1N1B4_1724 0.37 +0.0
1,971,016 - Pf1N1B4_1724 0.38 -6.0
1,971,386 + Pf1N1B4_1724 0.75 +0.0
1,971,386 + Pf1N1B4_1724 0.75 +0.0
1,971,387 - Pf1N1B4_1724 0.75 -3.5
1,971,387 - Pf1N1B4_1724 0.75 +0.0
1,971,387 - Pf1N1B4_1724 0.75 +0.0
1,971,387 - Pf1N1B4_1724 0.75 +0.0
1,971,638 + +0.0
1,971,638 + +0.0
1,971,638 + +0.0
1,971,638 + +0.0
1,971,638 + +0.0
1,971,638 + +0.0
1,971,639 - +0.0
1,971,639 - +0.0
1,971,639 - +0.0
1,971,639 - +0.0
1,971,639 - +0.0
1,971,673 - +0.0
1,971,761 + Pf1N1B4_1725 0.16 -4.8
1,971,761 + Pf1N1B4_1725 0.16 +0.0
1,971,761 + Pf1N1B4_1725 0.16 -1.1
1,971,762 - Pf1N1B4_1725 0.16 +0.0
1,971,762 - Pf1N1B4_1725 0.16 +0.0
1,971,762 - Pf1N1B4_1725 0.16 +0.0
1,971,770 + Pf1N1B4_1725 0.17 -3.9
1,971,770 + Pf1N1B4_1725 0.17 +0.0
1,971,770 + Pf1N1B4_1725 0.17 -3.1
1,971,770 + Pf1N1B4_1725 0.17 -3.9
1,971,771 - Pf1N1B4_1725 0.17 +0.0
1,971,771 - Pf1N1B4_1725 0.17 -3.0
1,971,771 - Pf1N1B4_1725 0.17 +0.0
1,971,771 - Pf1N1B4_1725 0.17 +0.0
1,971,771 - Pf1N1B4_1725 0.17 +0.0
1,971,884 + Pf1N1B4_1725 0.31 +0.0
1,971,884 + Pf1N1B4_1725 0.31 -3.4
1,971,884 + Pf1N1B4_1725 0.31 -4.3
1,971,884 + Pf1N1B4_1725 0.31 -5.8
1,971,884 + Pf1N1B4_1725 0.31 +0.0
1,971,885 - Pf1N1B4_1725 0.31 +0.0
1,971,885 - Pf1N1B4_1725 0.31 +0.0
1,971,885 - Pf1N1B4_1725 0.31 +0.0
1,972,132 + Pf1N1B4_1725 0.62 +0.0
1,972,132 + Pf1N1B4_1725 0.62 +0.0
1,972,132 + Pf1N1B4_1725 0.62 +0.0
1,972,132 + Pf1N1B4_1725 0.62 -5.3
1,972,133 - Pf1N1B4_1725 0.62 +0.0
1,972,133 - Pf1N1B4_1725 0.62 -3.0
1,972,133 - Pf1N1B4_1725 0.62 +0.0
1,972,133 - Pf1N1B4_1725 0.62 -2.4
1,972,133 - Pf1N1B4_1725 0.62 +0.0
1,972,133 - Pf1N1B4_1725 0.62 -3.6
1,972,133 - Pf1N1B4_1725 0.62 +0.0
1,972,133 - Pf1N1B4_1725 0.62 -3.4
1,972,133 - Pf1N1B4_1725 0.62 -3.0
1,972,133 - +0.0
1,972,133 - Pf1N1B4_1725 0.62 -3.8
1,972,133 - Pf1N1B4_1725 0.62 -4.3
1,972,133 - Pf1N1B4_1725 0.62 +0.0
1,972,133 - Pf1N1B4_1725 0.62 +0.0
1,972,133 - Pf1N1B4_1725 0.62 +0.0
1,972,133 - Pf1N1B4_1725 0.62 -4.5
1,972,133 - Pf1N1B4_1725 0.62 -4.0
1,972,133 - Pf1N1B4_1725 0.62 +0.0
1,972,133 - Pf1N1B4_1725 0.62 -4.3
1,972,136 + Pf1N1B4_1725 0.63 +0.0
1,972,136 + Pf1N1B4_1725 0.63 -4.1
1,972,136 + Pf1N1B4_1725 0.63 +0.0
1,972,136 + Pf1N1B4_1725 0.63 +0.0
1,972,136 + Pf1N1B4_1725 0.63 +0.0
1,972,136 + Pf1N1B4_1725 0.63 +0.0
1,972,136 + Pf1N1B4_1725 0.63 +0.0
1,972,136 + Pf1N1B4_1725 0.63 -4.1
1,972,136 + Pf1N1B4_1725 0.63 +0.0
1,972,137 - Pf1N1B4_1725 0.63 +0.0
1,972,137 - Pf1N1B4_1725 0.63 +0.0
1,972,137 - Pf1N1B4_1725 0.63 +0.0
1,972,137 - Pf1N1B4_1725 0.63 -3.6
1,972,137 - Pf1N1B4_1725 0.63 +0.0
1,972,137 - Pf1N1B4_1725 0.63 -4.5
1,972,137 - Pf1N1B4_1725 0.63 +0.0
1,972,137 - Pf1N1B4_1725 0.63 +0.0
1,972,137 - Pf1N1B4_1725 0.63 -3.0
1,972,137 - Pf1N1B4_1725 0.63 -3.5
1,972,217 + Pf1N1B4_1725 0.73 +0.0
1,972,218 - Pf1N1B4_1725 0.73 +0.0
1,972,218 - Pf1N1B4_1725 0.73 -3.0
1,972,491 + +0.0
1,972,491 + +0.0
1,972,492 - +0.0
1,972,592 + +0.0
1,972,592 + +0.0
1,972,592 + +0.0
1,972,593 - -2.5
1,972,593 - +0.0
1,972,617 + Pf1N1B4_1726 0.12 +0.0
1,972,618 - Pf1N1B4_1726 0.12 +0.0
1,972,623 + Pf1N1B4_1726 0.13 +0.0
1,972,624 - Pf1N1B4_1726 0.13 -3.7
1,972,797 - Pf1N1B4_1726 0.34 +0.0
1,972,856 + Pf1N1B4_1726 0.41 +0.0
1,972,870 + Pf1N1B4_1726 0.43 +0.0
1,972,871 - Pf1N1B4_1726 0.43 +0.0
1,972,871 - +0.0
1,972,871 - Pf1N1B4_1726 0.43 -3.7
1,972,874 + Pf1N1B4_1726 0.43 +0.0
1,972,874 + Pf1N1B4_1726 0.43 +0.0
1,972,875 - Pf1N1B4_1726 0.43 +0.0
1,972,878 - Pf1N1B4_1726 0.44 +0.0
1,972,878 - Pf1N1B4_1726 0.44 +0.0
1,972,892 + Pf1N1B4_1726 0.45 +0.0
1,972,892 + Pf1N1B4_1726 0.45 +0.0
1,972,929 + Pf1N1B4_1726 0.50 +0.0
1,972,929 + Pf1N1B4_1726 0.50 +0.0
1,972,986 + Pf1N1B4_1726 0.57 +0.0
1,972,986 + Pf1N1B4_1726 0.57 -5.7
1,972,987 - Pf1N1B4_1726 0.57 -3.3
1,973,079 + Pf1N1B4_1726 0.68 -5.4
1,973,136 + Pf1N1B4_1726 0.75 -3.5
1,973,137 - Pf1N1B4_1726 0.75 +0.0
1,973,137 - Pf1N1B4_1726 0.75 +0.0
1,973,216 - Pf1N1B4_1726 0.85 -1.7
1,973,274 + +0.0
1,973,274 + +0.0
1,973,274 + -3.1
1,973,275 - +0.0
1,973,275 - +0.0
1,973,275 - -6.4
1,973,275 - +0.0
1,973,275 - +0.0
1,973,275 - +0.0
1,973,275 - +0.0
1,973,286 + +0.0
1,973,326 + +0.0
1,973,327 - +0.0
1,973,327 - +0.0
1,973,338 + +0.0
1,973,338 + +0.0
1,973,338 + +0.0
1,973,338 + -4.4
1,973,338 + -4.1
1,973,338 + +0.0
1,973,338 + +0.0
1,973,338 + +0.0
1,973,338 + -3.8
1,973,338 + +0.0
1,973,338 + +0.0
1,973,338 + +0.0
1,973,410 + +0.0
1,973,410 + +0.0
1,973,410 + +0.0
1,973,410 + -4.5
1,973,410 + +0.0
1,973,410 + +0.0
1,973,410 + -2.8
1,973,410 + +0.0
1,973,410 + +0.0
1,973,410 + +0.0
1,973,410 + +0.0
1,973,410 + +0.0
1,973,410 + -2.1
1,973,410 + +0.0
1,973,411 - -1.1
1,973,411 - +0.0
1,973,411 - +0.0
1,973,411 - -1.8
1,973,411 - +0.0
1,973,411 - -3.6
1,973,411 - +0.0
1,973,411 - +0.0
1,973,418 - +0.0

Or see this region's nucleotide sequence