Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04315

Experiment: H2 N-free with 10mM L-Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04305 and MMP_RS04310 are separated by 14 nucleotidesMMP_RS04310 and MMP_RS04315 are separated by 268 nucleotidesMMP_RS04315 and MMP_RS04320 are separated by 24 nucleotides MMP_RS04305: MMP_RS04305 - hypothetical protein, at 822,197 to 822,490 _RS04305 MMP_RS04310: MMP_RS04310 - hypothetical protein, at 822,505 to 822,849 _RS04310 MMP_RS04315: MMP_RS04315 - corrinoid protein, at 823,118 to 823,777 _RS04315 MMP_RS04320: MMP_RS04320 - uroporphyrinogen decarboxylase family protein, at 823,802 to 824,893 _RS04320 Position (kb) 823 824Strain fitness (log2 ratio) -2 -1 0 1 2at 822.125 kb on - strandat 822.125 kb on - strandat 822.126 kb on + strandat 822.126 kb on + strandat 822.127 kb on - strandat 822.127 kb on - strandat 822.128 kb on + strandat 822.128 kb on + strandat 822.132 kb on + strandat 822.147 kb on - strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.156 kb on - strandat 822.157 kb on + strandat 822.157 kb on + strandat 822.158 kb on - strandat 822.158 kb on - strandat 822.158 kb on - strandat 822.158 kb on - strandat 822.158 kb on - strandat 822.159 kb on + strandat 822.159 kb on + strandat 822.175 kb on - strandat 822.178 kb on - strandat 822.179 kb on + strandat 822.209 kb on + strandat 822.235 kb on - strand, within MMP_RS04305at 822.384 kb on - strand, within MMP_RS04305at 822.489 kb on + strandat 822.514 kb on - strandat 822.522 kb on - strandat 822.708 kb on - strand, within MMP_RS04310at 822.722 kb on - strand, within MMP_RS04310at 822.770 kb on + strand, within MMP_RS04310at 822.770 kb on + strand, within MMP_RS04310at 822.861 kb on + strandat 822.861 kb on + strandat 822.865 kb on + strandat 822.865 kb on + strandat 822.869 kb on - strandat 822.870 kb on + strandat 822.870 kb on + strandat 822.875 kb on + strandat 822.886 kb on - strandat 822.896 kb on - strandat 822.896 kb on - strandat 822.897 kb on + strandat 822.897 kb on + strandat 822.899 kb on - strandat 822.900 kb on + strandat 822.900 kb on + strandat 822.900 kb on + strandat 822.902 kb on + strandat 822.902 kb on + strandat 822.902 kb on + strandat 822.907 kb on - strandat 822.907 kb on - strandat 822.953 kb on - strandat 822.970 kb on - strandat 822.971 kb on + strandat 822.973 kb on + strandat 822.978 kb on + strandat 822.983 kb on + strandat 822.985 kb on - strandat 823.141 kb on + strandat 823.143 kb on - strandat 823.265 kb on + strand, within MMP_RS04315at 823.286 kb on - strand, within MMP_RS04315at 823.318 kb on + strand, within MMP_RS04315at 823.340 kb on - strand, within MMP_RS04315at 823.340 kb on - strand, within MMP_RS04315at 823.340 kb on - strand, within MMP_RS04315at 823.340 kb on - strand, within MMP_RS04315at 823.341 kb on + strand, within MMP_RS04315at 823.341 kb on + strand, within MMP_RS04315at 823.341 kb on + strand, within MMP_RS04315at 823.341 kb on + strand, within MMP_RS04315at 823.360 kb on + strand, within MMP_RS04315at 823.371 kb on - strand, within MMP_RS04315at 823.491 kb on + strand, within MMP_RS04315at 823.547 kb on + strand, within MMP_RS04315at 823.645 kb on - strand, within MMP_RS04315at 823.983 kb on + strand, within MMP_RS04320at 824.026 kb on + strand, within MMP_RS04320at 824.078 kb on + strand, within MMP_RS04320at 824.088 kb on - strand, within MMP_RS04320at 824.224 kb on - strand, within MMP_RS04320at 824.299 kb on + strand, within MMP_RS04320at 824.320 kb on - strand, within MMP_RS04320at 824.395 kb on - strand, within MMP_RS04320at 824.428 kb on + strand, within MMP_RS04320at 824.428 kb on + strand, within MMP_RS04320at 824.428 kb on + strand, within MMP_RS04320at 824.462 kb on - strand, within MMP_RS04320at 824.462 kb on - strand, within MMP_RS04320at 824.463 kb on + strand, within MMP_RS04320at 824.466 kb on - strand, within MMP_RS04320at 824.487 kb on - strand, within MMP_RS04320at 824.487 kb on - strand, within MMP_RS04320at 824.556 kb on - strand, within MMP_RS04320at 824.569 kb on + strand, within MMP_RS04320at 824.710 kb on - strand, within MMP_RS04320at 824.711 kb on + strand, within MMP_RS04320at 824.711 kb on + strand, within MMP_RS04320

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Methionine
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822,125 - +0.3
822,125 - +1.1
822,126 + +0.2
822,126 + +0.1
822,127 - +1.4
822,127 - -0.6
822,128 + +0.2
822,128 + +0.5
822,132 + +0.6
822,147 - +1.5
822,156 - +0.2
822,156 - +0.5
822,156 - -0.5
822,156 - +0.6
822,156 - +0.2
822,156 - -1.0
822,157 + +0.3
822,157 + +1.0
822,158 - +0.5
822,158 - -0.2
822,158 - -0.7
822,158 - +0.4
822,158 - -0.2
822,159 + -1.3
822,159 + +1.9
822,175 - +1.4
822,178 - +0.2
822,179 + -0.3
822,209 + +0.2
822,235 - MMP_RS04305 0.13 +0.9
822,384 - MMP_RS04305 0.64 -0.0
822,489 + +0.5
822,514 - +1.8
822,522 - +1.8
822,708 - MMP_RS04310 0.59 +1.9
822,722 - MMP_RS04310 0.63 -0.5
822,770 + MMP_RS04310 0.77 -1.0
822,770 + MMP_RS04310 0.77 -0.9
822,861 + -0.5
822,861 + -0.3
822,865 + +0.1
822,865 + +0.8
822,869 - +0.5
822,870 + -1.3
822,870 + -1.6
822,875 + -1.1
822,886 - +2.1
822,896 - -2.5
822,896 - +0.1
822,897 + -0.1
822,897 + -1.9
822,899 - +1.6
822,900 + -0.6
822,900 + -0.5
822,900 + -0.1
822,902 + -1.0
822,902 + -0.6
822,902 + -0.5
822,907 - -0.5
822,907 - +0.4
822,953 - -0.3
822,970 - +1.0
822,971 + +0.6
822,973 + +0.4
822,978 + +0.1
822,983 + +0.6
822,985 - -0.2
823,141 + +1.3
823,143 - -1.4
823,265 + MMP_RS04315 0.22 -0.6
823,286 - MMP_RS04315 0.25 +0.7
823,318 + MMP_RS04315 0.30 +1.3
823,340 - MMP_RS04315 0.34 -0.5
823,340 - MMP_RS04315 0.34 +2.0
823,340 - MMP_RS04315 0.34 -0.7
823,340 - MMP_RS04315 0.34 +1.9
823,341 + MMP_RS04315 0.34 +2.1
823,341 + MMP_RS04315 0.34 +1.3
823,341 + MMP_RS04315 0.34 -0.2
823,341 + MMP_RS04315 0.34 +0.1
823,360 + MMP_RS04315 0.37 +1.7
823,371 - MMP_RS04315 0.38 +0.5
823,491 + MMP_RS04315 0.57 -0.2
823,547 + MMP_RS04315 0.65 +0.6
823,645 - MMP_RS04315 0.80 +0.2
823,983 + MMP_RS04320 0.17 +0.8
824,026 + MMP_RS04320 0.21 -1.0
824,078 + MMP_RS04320 0.25 +2.4
824,088 - MMP_RS04320 0.26 +0.1
824,224 - MMP_RS04320 0.39 +1.2
824,299 + MMP_RS04320 0.46 +0.4
824,320 - MMP_RS04320 0.47 -2.1
824,395 - MMP_RS04320 0.54 -0.4
824,428 + MMP_RS04320 0.57 -0.6
824,428 + MMP_RS04320 0.57 -0.6
824,428 + MMP_RS04320 0.57 +1.1
824,462 - MMP_RS04320 0.60 +0.8
824,462 - MMP_RS04320 0.60 +0.1
824,463 + MMP_RS04320 0.61 -0.2
824,466 - MMP_RS04320 0.61 +1.8
824,487 - MMP_RS04320 0.63 +0.4
824,487 - MMP_RS04320 0.63 +0.4
824,556 - MMP_RS04320 0.69 +0.5
824,569 + MMP_RS04320 0.70 +0.9
824,710 - MMP_RS04320 0.83 +2.1
824,711 + MMP_RS04320 0.83 -1.1
824,711 + MMP_RS04320 0.83 -0.4

Or see this region's nucleotide sequence