Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c36430

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,811,537	+				-0.4
3,811,537	+				-0.8
3,811,542	+				-0.4
3,811,544	+				-0.2
3,811,545	-				-0.2
3,811,550	-				-1.0
3,811,550	-				-1.2
3,811,550	-				+0.5
3,811,552	+				+0.5
3,811,552	+				+0.6
3,811,579	-				+0.7
3,811,596	+				+0.6
3,811,597	+				-0.4
3,811,606	-				-0.6
3,811,606	-				-0.0
3,811,676	+				-0.4
3,811,684	-				-0.0
3,811,765	-				+0.6
3,811,773	-				-0.2
3,811,773	-				-0.3
3,811,801	+				+0.7
3,811,807	+				+0.2
3,811,807	+				+0.0
3,811,807	+				-1.2
3,811,813	+				+0.8
3,811,830	+				+0.7
3,811,839	-				+0.2
3,811,846	+				+0.3
3,811,846	+				-0.1
3,811,846	+				-0.6
3,811,854	-				+0.5
3,811,854	-				+1.3
3,811,854	-				+0.5
3,811,854	-				-0.9
3,811,904	-		PGA1_c36430	0.12	-0.0
3,811,941	+		PGA1_c36430	0.14	-0.5
3,811,949	-		PGA1_c36430	0.14	+1.0
3,811,957	+		PGA1_c36430	0.14	-0.9
3,811,957	+		PGA1_c36430	0.14	+0.5
3,811,957	+		PGA1_c36430	0.14	+0.1
3,811,957	+		PGA1_c36430	0.14	-2.7
3,811,965	-		PGA1_c36430	0.15	-0.5
3,811,965	-		PGA1_c36430	0.15	+1.0
3,811,965	-		PGA1_c36430	0.15	-0.1
3,811,965	-		PGA1_c36430	0.15	-1.0
3,811,966	-		PGA1_c36430	0.15	-0.1
3,811,997	-		PGA1_c36430	0.16	+0.7
3,812,081	+		PGA1_c36430	0.20	-0.7
3,812,089	-		PGA1_c36430	0.20	+0.1
3,812,089	-		PGA1_c36430	0.20	-1.7
3,812,094	+		PGA1_c36430	0.21	-0.1
3,812,137	-		PGA1_c36430	0.22	+0.4
3,812,184	+		PGA1_c36430	0.24	-0.4
3,812,202	-		PGA1_c36430	0.25	+0.2
3,812,402	+		PGA1_c36430	0.34	+0.7
3,812,417	-		PGA1_c36430	0.35	-1.5
3,812,442	+		PGA1_c36430	0.36	-0.4
3,812,532	+		PGA1_c36430	0.40	+0.4
3,812,537	+		PGA1_c36430	0.40	-0.9
3,812,537	+		PGA1_c36430	0.40	+1.4
3,812,537	+		PGA1_c36430	0.40	+0.5
3,812,537	+		PGA1_c36430	0.40	+0.7
3,812,537	+		PGA1_c36430	0.40	-0.5
3,812,540	-		PGA1_c36430	0.40	+1.0
3,812,545	-		PGA1_c36430	0.40	-0.5
3,812,545	-		PGA1_c36430	0.40	-0.1
3,812,545	-		PGA1_c36430	0.40	-0.3
3,812,614	+		PGA1_c36430	0.43	+0.2
3,812,614	+		PGA1_c36430	0.43	-0.7
3,812,622	-		PGA1_c36430	0.44	+0.6
3,812,622	-		PGA1_c36430	0.44	+0.3
3,812,622	-		PGA1_c36430	0.44	+0.6
3,812,626	+		PGA1_c36430	0.44	-0.8
3,812,634	-		PGA1_c36430	0.44	+0.7
3,812,634	-		PGA1_c36430	0.44	+0.8
3,812,634	-		PGA1_c36430	0.44	+0.5
3,812,645	+		PGA1_c36430	0.45	+0.1
3,812,646	-		PGA1_c36430	0.45	+0.2
3,812,656	+		PGA1_c36430	0.45	-0.2
3,812,661	+		PGA1_c36430	0.45	-0.1
3,812,661	+		PGA1_c36430	0.45	-0.4
3,812,669	-		PGA1_c36430	0.46	-0.5
3,812,752	-		PGA1_c36430	0.49	+1.7
3,812,791	+		PGA1_c36430	0.51	+1.3
3,812,816	+		PGA1_c36430	0.52	-0.7
3,812,830	+		PGA1_c36430	0.53	-0.5
3,812,852	-		PGA1_c36430	0.54	+0.6
3,812,854	+		PGA1_c36430	0.54	+0.2
3,812,854	+		PGA1_c36430	0.54	-0.7
3,812,857	-		PGA1_c36430	0.54	-0.5
3,812,862	-		PGA1_c36430	0.54	+0.9
3,812,885	+		PGA1_c36430	0.55	-0.0
3,812,893	-		PGA1_c36430	0.56	+0.3
3,812,923	+		PGA1_c36430	0.57	-0.8
3,812,947	-		PGA1_c36430	0.58	-0.9
3,812,957	+		PGA1_c36430	0.59	-0.3
3,812,957	+		PGA1_c36430	0.59	-0.0
3,812,967	+		PGA1_c36430	0.59	-0.3
3,812,967	+		PGA1_c36430	0.59	-0.0
3,812,975	-		PGA1_c36430	0.59	+1.1
3,813,001	-		PGA1_c36430	0.60	-0.3
3,813,023	-		PGA1_c36430	0.61	+1.2
3,813,052	-		PGA1_c36430	0.63	+0.7
3,813,081	+		PGA1_c36430	0.64	-0.8
3,813,090	-		PGA1_c36430	0.64	-0.7
3,813,102	-		PGA1_c36430	0.65	+0.4
3,813,102	-		PGA1_c36430	0.65	+0.1
3,813,113	-		PGA1_c36430	0.65	-1.0
3,813,140	+		PGA1_c36430	0.67	+0.1
3,813,150	+		PGA1_c36430	0.67	-0.0
3,813,151	-		PGA1_c36430	0.67	+0.5
3,813,172	+		PGA1_c36430	0.68	+0.2
3,813,172	+		PGA1_c36430	0.68	+0.4
3,813,177	+		PGA1_c36430	0.68	+0.0
3,813,190	-		PGA1_c36430	0.69	-0.1
3,813,205	+		PGA1_c36430	0.69	-1.9
3,813,246	-		PGA1_c36430	0.71	-0.4
3,813,304	-		PGA1_c36430	0.74	+0.8
3,813,316	+		PGA1_c36430	0.74	-0.4
3,813,361	+		PGA1_c36430	0.76	-0.6
3,813,377	+		PGA1_c36430	0.77	+0.2
3,813,410	-		PGA1_c36430	0.78	+0.4
3,813,463	+		PGA1_c36430	0.81	-1.6
3,813,524	+		PGA1_c36430	0.83	+0.4
3,813,532	-		PGA1_c36430	0.84	+0.8
3,813,577	-		PGA1_c36430	0.86	+0.7
3,813,587	+		PGA1_c36430	0.86	+0.3
3,813,589	+		PGA1_c36430	0.86	+0.2
3,813,710	+				-1.1
3,813,735	-				+1.0
3,813,841	+				-0.4
3,813,841	+				-0.1
3,813,870	-				+1.4
3,813,931	+				-0.6
3,813,946	+				-0.6
3,813,946	+				+0.3
3,813,954	-				+0.3
3,813,954	-				+0.2
3,813,979	+		PGA1_c36440	0.13	-0.8
3,814,036	+		PGA1_c36440	0.26	+1.0
3,814,042	-		PGA1_c36440	0.28	-0.2
3,814,042	-		PGA1_c36440	0.28	-0.2
3,814,077	-		PGA1_c36440	0.35	-0.7
3,814,242	+		PGA1_c36440	0.72	-0.0
3,814,263	+		PGA1_c36440	0.77	-0.3
3,814,271	-		PGA1_c36440	0.79	+0.2
3,814,296	-		PGA1_c36440	0.84	+0.2
3,814,296	-		PGA1_c36440	0.84	+0.2
3,814,299	+		PGA1_c36440	0.85	+1.3
3,814,348	+				-0.6
3,814,360	+				-1.7
3,814,360	+				-1.0
3,814,360	+				-1.3
3,814,368	-				-1.2
3,814,399	+				-0.8
3,814,455	+				-1.0
3,814,455	+				-1.9
3,814,463	-				+0.5
3,814,463	-				-1.4
3,814,502	+				+0.6
3,814,502	-				-0.1
3,814,576	+		PGA1_c36450	0.17	-0.6
3,814,579	+		PGA1_c36450	0.17	-0.3
3,814,618	+		PGA1_c36450	0.22	+0.0
3,814,633	-		PGA1_c36450	0.24	-0.5
3,814,672	-		PGA1_c36450	0.30	+0.5
3,814,686	-		PGA1_c36450	0.32	-0.6
3,814,686	-		PGA1_c36450	0.32	-0.1
3,814,745	-		PGA1_c36450	0.40	-0.6
3,814,826	-		PGA1_c36450	0.51	+0.1
3,814,865	+		PGA1_c36450	0.56	-1.4